Pecam1 (platelet and endothelial cell adhesion molecule 1) - Rat Genome Database

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Gene: Pecam1 (platelet and endothelial cell adhesion molecule 1) Chinchilla lanigera
Analyze
Symbol: Pecam1
Name: platelet and endothelial cell adhesion molecule 1
RGD ID: 9001664
Description: ENCODES a protein that exhibits protein homodimerization activity (ortholog); protein phosphatase binding (ortholog); INVOLVED IN angiogenesis (ortholog); bicellular tight junction assembly (ortholog); cell adhesion (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); Acute Lung Injury (ortholog); atherosclerosis (ortholog); FOUND IN cell periphery (ortholog); cell surface (ortholog); cell-cell contact zone (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: platelet endothelial cell adhesion molecule; platelet/endothelial cell adhesion molecule 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554787,478,492 - 7,531,188 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554787,448,584 - 7,531,860 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Acute Coronary Syndrome  (ISO)
Acute Lung Injury  (ISO)
atherosclerosis  (ISO)
autistic disorder  (ISO)
autoimmune disease  (ISO)
B-Cell Chronic Lymphocytic Leukemia  (ISO)
babesiosis  (ISO)
bacterial pneumonia  (ISO)
Bone Fractures  (ISO)
Brain Injuries  (ISO)
Breast Neoplasms  (ISO)
chronic myeloid leukemia  (ISO)
chronic venous insufficiency  (ISO)
Colonic Neoplasms  (ISO)
Colorectal Neoplasms  (ISO)
common variable immunodeficiency  (ISO)
corneal neovascularization  (ISO)
coronary artery disease  (ISO)
Coronary Disease  (ISO)
coronary stenosis  (ISO)
diabetic angiopathy  (ISO)
Diabetic Nephropathies  (ISO)
Drug-Induced Immune Thrombocytopenia  (ISO)
Endotoxemia  (ISO)
eosinophilic esophagitis  (ISO)
Experimental Arthritis  (ISO)
Experimental Diabetes Mellitus  (ISO)
Experimental Radiation Injuries  (ISO)
glioblastoma  (ISO)
graft-versus-host disease  (ISO)
hyperkalemic periodic paralysis  (ISO)
limb ischemia  (ISO)
liver cirrhosis  (ISO)
Lung Injury  (ISO)
lung non-small cell carcinoma  (ISO)
Lung Reperfusion Injury  (ISO)
myeloid leukemia  (ISO)
myocardial infarction  (ISO)
Myocardial Reperfusion Injury  (ISO)
Neovascularization, Pathologic  (ISO)
neurilemmoma  (ISO)
neuroblastoma  (ISO)
Ocular Neovascularization  (ISO)
Optic Nerve Injuries  (ISO)
oral squamous cell carcinoma  (ISO)
orchitis  (ISO)
osteoarthritis  (ISO)
ovarian cancer  (ISO)
Penetrating Wounds  (ISO)
periodontitis  (ISO)
Peritoneal Fibrosis  (ISO)
peritonitis  (ISO)
polycystic ovary syndrome  (ISO)
polymyalgia rheumatica  (ISO)
Preeclamptic Toxemia  (ISO)
psoriatic arthritis  (ISO)
pterygium  (ISO)
pulmonary hypertension  (ISO)
Reperfusion Injury  (ISO)
sarcoma  (ISO)
Sepsis  (ISO)
severe acute respiratory syndrome  (ISO)
sickle cell anemia  (ISO)
spinal muscular atrophy  (ISO)
systemic scleroderma  (ISO)
tauopathy  (ISO)
thrombocytopenia  (ISO)
transient cerebral ischemia  (ISO)
type 2 diabetes mellitus  (ISO)
varicose veins  (ISO)
Vascular System Injuries  (ISO)
Venous Thrombosis  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
angiogenesis  (ISO)
bicellular tight junction assembly  (ISO)
cell adhesion  (ISO)
cell surface receptor signaling pathway  (ISO)
cell-cell adhesion  (ISO)
cell-cell adhesion via plasma-membrane adhesion molecules  (ISO)
cellular response to mechanical stimulus  (ISO)
cellular response to transforming growth factor beta stimulus  (ISO)
cellular response to type II interferon  (ISO)
detection of mechanical stimulus  (ISO)
diapedesis  (ISO)
endothelial cell migration  (ISO)
endothelial cell morphogenesis  (ISO)
endothelial cell-matrix adhesion  (ISO)
establishment of endothelial barrier  (ISO)
glomerular endothelium development  (ISO)
homophilic cell adhesion via plasma membrane adhesion molecules  (ISO)
leukocyte cell-cell adhesion  (ISO)
monocyte extravasation  (ISO)
negative regulation of actin filament polymerization  (ISO)
negative regulation of GTPase activity  (ISO)
negative regulation of peptidyl-tyrosine phosphorylation  (ISO)
neutrophil extravasation  (ISO)
phagocytosis  (ISO)
positive regulation of cell migration  (ISO)
positive regulation of cellular extravasation  (ISO)
positive regulation of intracellular signal transduction  (ISO)
positive regulation of leukocyte migration  (ISO)
positive regulation of MAPK cascade  (ISO)
positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction  (ISO)
positive regulation of protein localization to cell-cell junction  (ISO)
positive regulation of tyrosine phosphorylation of STAT protein  (ISO)
regulation of cell migration  (ISO)
Rho protein signal transduction  (ISO)
vasodilation  (ISO)
wound healing  (ISO)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Pecam1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554787,478,492 - 7,531,188 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554787,448,584 - 7,531,860 (+)NCBIChiLan1.0ChiLan1.0
PECAM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381764,319,415 - 64,390,860 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1764,319,415 - 64,413,776 (-)EnsemblGRCh38hg38GRCh38
GRCh371762,396,775 - 62,404,856 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361759,753,595 - 59,817,743 (-)NCBINCBI36Build 36hg18NCBI36
Build 341759,754,144 - 59,817,723NCBI
Celera1756,788,107 - 56,856,790 (-)NCBICelera
Cytogenetic Map17q23.3NCBI
HuRef1757,766,219 - 57,837,658 (-)NCBIHuRef
CHM1_11762,461,123 - 62,469,204 (-)NCBICHM1_1
T2T-CHM13v2.01765,189,155 - 65,283,610 (-)NCBIT2T-CHM13v2.0
Pecam1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911106,545,039 - 106,606,107 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11106,545,043 - 106,641,454 (-)EnsemblGRCm39 Ensembl
GRCm3811106,654,213 - 106,715,281 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11106,654,217 - 106,750,628 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711106,515,532 - 106,576,595 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611106,470,308 - 106,531,371 (-)NCBIMGSCv36mm8
Celera11118,385,876 - 118,446,185 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1169.92NCBI
Pecam1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81092,090,263 - 92,152,002 (-)NCBIGRCr8
mRatBN7.21091,590,521 - 91,652,279 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1091,590,521 - 91,652,116 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1096,645,826 - 96,707,375 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01096,108,988 - 96,170,543 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01091,513,174 - 91,573,871 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01094,850,971 - 94,913,202 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01094,598,951 - 94,660,385 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41096,056,220 - 96,057,232 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1090,260,186 - 90,318,290 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
PECAM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21980,509,619 - 80,618,517 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11785,327,260 - 85,436,138 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01758,417,134 - 58,526,409 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11763,511,784 - 63,601,241 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1763,511,784 - 63,579,067 (-)Ensemblpanpan1.1panPan2
PECAM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1912,166,124 - 12,219,553 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl912,166,775 - 12,219,778 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha913,062,602 - 13,116,028 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0913,828,912 - 13,882,564 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl913,828,916 - 13,885,280 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1912,775,258 - 12,828,596 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0914,703,955 - 14,757,407 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0914,705,590 - 14,758,833 (+)NCBIUU_Cfam_GSD_1.0
Pecam1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560214,247,718 - 14,321,139 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365414,873,182 - 4,937,500 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365414,873,459 - 4,919,787 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PECAM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1214,649,044 - 14,723,293 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11214,667,643 - 14,723,296 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21214,661,621 - 14,717,153 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PECAM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11656,863,763 - 56,947,479 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1656,880,934 - 56,950,999 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607727,456,525 - 27,565,234 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pecam1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462487033,293 - 122,536 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005402168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013503222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013503223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013503224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01055964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBCQ01033991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCLAT00000012452   ⟹   ENSCLAP00000012309
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554787,478,492 - 7,531,188 (+)Ensembl
RefSeq Acc Id: XM_005402168   ⟹   XP_005402225
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554787,448,584 - 7,531,860 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503222   ⟹   XP_013358676
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554787,479,396 - 7,531,860 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503223   ⟹   XP_013358677
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554787,479,398 - 7,531,860 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503224   ⟹   XP_013358678
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554787,479,394 - 7,531,860 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005402225 (Get FASTA)   NCBI Sequence Viewer  
  XP_013358676 (Get FASTA)   NCBI Sequence Viewer  
  XP_013358677 (Get FASTA)   NCBI Sequence Viewer  
  XP_013358678 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000012309
  ENSCLAP00000012309.1
RefSeq Acc Id: XP_005402225   ⟸   XM_005402168
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013358678   ⟸   XM_013503224
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013358676   ⟸   XM_013503222
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013358677   ⟸   XM_013503223
- Peptide Label: isoform X2
- UniProtKB: A0A8C2V9M5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000012309   ⟸   ENSCLAT00000012452
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008503 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012452 ENTREZGENE
  ENSCLAT00000012452.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_C17orf99 UniProtKB/TrEMBL
  Ig_Fc_receptor UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
NCBI Gene Pecam1 ENTREZGENE
PANTHER IG-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  IMMUNOGLOBULIN FC RECEPTOR UniProtKB/TrEMBL
Pfam Ig_2 UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
  Ig_C17orf99 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8C2V9M5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Pecam1  platelet and endothelial cell adhesion molecule 1    platelet/endothelial cell adhesion molecule 1  Symbol and/or name change 5135510 APPROVED