Il6r (interleukin 6 receptor) - Rat Genome Database

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Gene: Il6r (interleukin 6 receptor) Chinchilla lanigera
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Symbol: Il6r
Name: interleukin 6 receptor
RGD ID: 8858068
Description: ENCODES a protein that exhibits ciliary neurotrophic factor binding (ortholog); ciliary neurotrophic factor receptor activity (ortholog); enzyme binding (ortholog); INVOLVED IN ciliary neurotrophic factor-mediated signaling pathway (ortholog); cytokine-mediated signaling pathway (ortholog); developmental growth (ortholog); PARTICIPATES IN interleukin-6 signaling pathway; ASSOCIATED WITH Acute-Phase Reaction (ortholog); arrhythmogenic right ventricular cardiomyopathy (ortholog); asthma (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); ciliary neurotrophic factor receptor complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: interleukin-6 receptor subunit alpha
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545950,765 - 981,762 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955545932,814 - 979,359 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Il6r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545950,765 - 981,762 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955545932,814 - 979,359 (+)NCBIChiLan1.0ChiLan1.0
IL6R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1154,405,193 - 154,469,450 (+)EnsemblGRCh38hg38GRCh38
GRCh381154,405,343 - 154,469,450 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371154,377,819 - 154,441,926 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361152,644,293 - 152,706,812 (+)NCBINCBI36hg18NCBI36
Build 341151,190,741 - 151,253,261NCBI
Celera1127,449,298 - 127,511,851 (+)NCBI
Cytogenetic Map1q21.3NCBI
HuRef1125,740,964 - 125,805,584 (+)NCBIHuRef
CHM1_11155,774,020 - 155,838,256 (+)NCBICHM1_1
Il6ra
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,776,631 - 89,820,503 (-)NCBIGRCm39mm39
GRCm39 Ensembl389,771,366 - 89,820,503 (-)Ensembl
GRCm38389,869,324 - 89,913,196 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,864,059 - 89,913,196 (-)EnsemblGRCm38mm10GRCm38
MGSCv37389,673,246 - 89,717,084 (-)NCBIGRCm37mm9NCBIm37
MGSCv36389,962,736 - 89,998,969 (-)NCBImm8
Celera389,906,161 - 89,949,620 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.19NCBI
Il6r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22175,289,157 - 175,347,719 (-)NCBI
Rnor_6.0 Ensembl2189,205,701 - 189,254,628 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02189,196,180 - 189,255,987 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02208,619,391 - 208,679,233 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,078,049 - 182,128,135 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12182,028,156 - 182,078,238 (-)NCBI
Celera2169,240,233 - 169,289,575 (-)NCBICelera
Cytogenetic Map2q34NCBI
IL6R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11133,374,078 - 133,433,089 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1133,374,078 - 133,433,089 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01129,761,914 - 129,824,386 (+)NCBIMhudiblu_PPA_v0panPan3
IL6R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1742,877,731 - 42,920,149 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl742,880,885 - 42,920,090 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,368,082 - 42,410,484 (-)NCBI
ROS_Cfam_1.0742,747,387 - 42,789,817 (-)NCBI
UMICH_Zoey_3.1742,526,574 - 42,569,177 (-)NCBI
UNSW_CanFamBas_1.0742,580,411 - 42,622,783 (-)NCBI
UU_Cfam_GSD_1.0742,864,074 - 42,906,503 (-)NCBI
Il6r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505825,027,301 - 25,051,502 (+)NCBI
SpeTri2.0NW_0049365804,055,438 - 4,081,876 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL6R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,322,426 - 95,381,282 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,322,426 - 95,381,393 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,202,230 - 104,250,108 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IL6R
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1209,345,723 - 9,418,963 (-)NCBI
ChlSab1.1 Ensembl209,361,152 - 9,396,610 (-)Ensembl
Il6r
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248852,910,367 - 2,946,916 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000005872   ⟹   ENSCLAP00000005771
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955545950,765 - 981,762 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000005873   ⟹   ENSCLAP00000005772
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955545950,765 - 981,762 (+)Ensembl
RefSeq Acc Id: XM_013508348   ⟹   XP_013363802
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955545932,814 - 979,359 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508349   ⟹   XP_013363803
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955545932,814 - 979,359 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013363802 (Get FASTA)   NCBI Sequence Viewer  
  XP_013363803 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013363802   ⟸   XM_013508348
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013363803   ⟸   XM_013508349
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000005772   ⟸   ENSCLAT00000005873
RefSeq Acc Id: ENSCLAP00000005771   ⟸   ENSCLAT00000005872


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004093 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000005772 ENTREZGENE
Ensembl Transcript ENSCLAT00000005873 ENTREZGENE
NCBI Gene Il6r ENTREZGENE