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nemaline myopathy 5A - Ontology Report - Rat Genome Database

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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:nemaline myopathy 5A
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Accession:DOID:0110936 term browser browse the term
Definition:A nemaline myopathy that has_material_basis_in autosomal recessive inheritance of a homozygous mutation in the TNNT1 gene on chromosome 19q13, with infantile onset. (DO)
Synonyms:exact_synonym: ANM;   Amish nemaline myopathy;   NEM5;   nemaline myopathy 5, Amish type;   nemaline myopathy, Amish type;   nemaline myopathy, caused by mutation in the troponin t1 gene
 primary_id: MESH:C538397
 alt_id: MIM:605355
 xref: GARD:8334;   ORDO:98902


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nemaline myopathy 5A term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnaaf3 dynein, axonemal, assembly factor 3 ISO ClinVar Annotator: match by term: Nemaline myopathy 5, Amish type ClinVar PMID:28492532 NCBI chr 1:78,333,985...78,342,034
Ensembl chr 1:69,291,454...69,299,344
JBrowse link
G Mvk mevalonate kinase ISO ClinVar Annotator: match by term: Nemaline myopathy 5, Amish type ClinVar PMID:16835861 PMID:22246419 PMID:23006543 PMID:24411001 PMID:25741868 More... NCBI chr12:47,802,002...47,819,503
Ensembl chr12:42,141,384...42,158,882
JBrowse link
G Ppp6r1 protein phosphatase 6, regulatory subunit 1 ISO ClinVar Annotator: match by term: Nemaline myopathy 5, Amish type ClinVar PMID:28492532 NCBI chr 1:78,218,629...78,246,360
Ensembl chr 1:69,189,822...69,216,272
JBrowse link
G Ptprh protein tyrosine phosphatase, receptor type, H ISO ClinVar Annotator: match by term: Nemaline myopathy 5, Amish type ClinVar PMID:28492532 NCBI chr 1:78,272,414...78,318,977
Ensembl chr 1:69,242,321...69,285,077
JBrowse link
G Syt5 synaptotagmin 5 ISO ClinVar Annotator: match by term: Nemaline myopathy 5, Amish type ClinVar PMID:28492532 NCBI chr 1:78,320,034...78,327,750
Ensembl chr 1:69,277,351...69,285,067
JBrowse link
G Tmem86b transmembrane protein 86B ISO ClinVar Annotator: match by term: Nemaline myopathy 5, Amish type ClinVar PMID:28492532 NCBI chr 1:69,218,109...69,220,474
Ensembl chr 1:69,218,608...69,220,124
JBrowse link
G Tnni3 troponin I3, cardiac type ISO ClinVar Annotator: match by term: Nemaline myopathy 5, Amish type ClinVar PMID:18414213 PMID:24033266 PMID:25741868 PMID:26467025 PMID:28492532 NCBI chr 1:78,342,571...78,346,255
Ensembl chr 1:69,299,900...69,303,580
JBrowse link
G Tnnt1 troponin T1, slow skeletal type ISO
ISS
DNA:nonsense mutation:exon:p.E180X (human)
ClinVar Annotator: match by term: Nemaline Myopathy, Amish Type | ClinVar Annotator: match by term: Nemaline myopathy 5, Amish type | ClinVar Annotator: match by term: Nemaline myopathy, caused by mutation in the troponin t1 gene
CTD Direct Evidence: marker/mechanism
OMIM:605355
OMIM
ClinVar
CTD
MouseDO
RGD
PMID:5908457 PMID:9536098 PMID:10952871 PMID:12732643 PMID:14315666 More... RGD:737736 NCBI chr 1:78,349,035...78,359,394
Ensembl chr 1:69,306,362...69,316,721
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19140
    Developmental Disease 14675
      Congenital, Hereditary, and Neonatal Diseases and Abnormalities 13724
        genetic disease 13391
          monogenic disease 10964
            autosomal genetic disease 10452
              autosomal recessive disease 7136
                nemaline myopathy 5A 8
Path 2
Term Annotations click to browse term
  disease 19140
    disease of anatomical entity 18453
      nervous system disease 14363
        peripheral nervous system disease 4397
          neuropathy 4185
            neuromuscular disease 3226
              muscular disease 2233
                muscle tissue disease 1357
                  myopathy 1049
                    congenital myopathy 252
                      nemaline myopathy 68
                        nemaline myopathy 5A 8
paths to the root