D6Rat149 Marker Search Result - Rat Genome Database

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Marker: D6Rat149

Symbol: D6Rat149
Previously known as: oxsts11213; R0104-D02; 
RGD ID: 39716
Expected Size: 150 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2610,894,415 - 10,894,565 (-)MAPPERmRatBN7.2
Rnor_6.067,009,971 - 7,010,120NCBIRnor6.0
Rnor_5.066,959,479 - 6,959,628UniSTSRnor5.0
RGSC_v3.467,161,389 - 7,161,824RGDRGSC3.4
RGSC_v3.467,161,391 - 7,161,540UniSTSRGSC3.4
Celera610,601,087 - 10,601,220UniSTS
RGSC_v3.167,161,391 - 7,161,540RGD
RH 3.4 Map6535.4RGD
RH 3.4 Map6535.4UniSTS
RH 2.0 Map6754.9RGD
SHRSP x BN Map65.4899RGD
Cytogenetic Map6q12UniSTS
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo ; SS.BN-(D6Rat149-D6Rat18)/Mcwi ; SS.BN-(D6Rat149-D6Got171)/Mcwi ; SS.BN-(D6Rat149-D6Arb3)/Mcwi
QTLs:   Mcs25  
Genes:   Mta3  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer GAAGAACAAATTTCTATTAAAGGCA
Reverse Primer TTGAAAGTAGCAGGAGGGAAA
 
Template 
CCAGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCTTGAAAGTAGCAGGAGGG
AAACCATATACTGTGGCTTCTCTTGCCTGTTTTTATAATGTTTGCTCTGTGCGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTTTGCCTTTAATAGAAATTTGTT
CTTCAATGGTTACTTAAATTTTAAATTTTTTATGTATATGAGTATTTTGCCTGCATGTATGTAT
GTGTACCATATATATGTATGGCACATGGAAGTCAAAGCCCATTGGTCCTAGAGTTACAGGTGGT
TTTGAGCAACAGTATGGCTGCTGGGAACCTAACCAGGATCTTCTGCAAGAGCCACAAGGGCTTG
TAACTTCTGCACCCTTAAACTGATAACATGTAAACTGGTTACTTCTATGTCCCTTAAATCGTTC
TTTTCTTTTAAGTTGTGCAAGTGGTTTCAAGT

Region

Nucleotide Sequences
GenBank Nucleotide CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100362346 UniSTS
  100526671 UniSTS