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Strain Registration

Strain: SS.BN-(D6Rat149-D6Arb3)/Mcwi

Symbol: SS.BN-(D6Rat149-D6Arb3)/Mcwi
Strain: SS.BN-(D6Rat149-D6Arb3)
Substrain: Mcwi
RGD ID: 4145091
Citation ID: RRID:RGD_4145091
Ontology ID: RS:0002482
Also Known As: SS.BN-(D6Rat149-D6Arb3)/Mcwi; SS.BN-(D6Rat149-D6RatArb3)/Mcwi
Type: congenic
Available Source: Not Available
Origination: Medical College of Wisconsin, Milwaukee, Wisconsin
Description: SS/JrHsdMcwi were crossed with SS-6BN/Mcwi, rats from F1 were intercrossed and genotyped to get the congenic strain
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2610,894,415 - 132,339,866RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.067,009,971 - 138,065,254RGD_MAPPER_PIPELINERnor6.0
Rnor_5.066,959,479 - 147,057,860RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.467,161,389 - 138,260,635RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. Identification of novel carcinogen-mediated mammary tumor susceptibility loci in the rat using the chromosome substitution technique. Adamovic T, et al., Genes Chromosomes Cancer. 2010 Nov;49(11):1035-45.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D6Rat149)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2610,894,415 - 10,894,565 (-)MAPPER
Rnor_6.067,009,971 - 7,010,120NCBI
Rnor_5.066,959,479 - 6,959,628UniSTS
RGSC_v3.467,161,389 - 7,161,824RGD
RGSC_v3.467,161,391 - 7,161,540UniSTS
RGSC_v3.167,161,391 - 7,161,540RGD
Celera610,601,087 - 10,601,220UniSTS
RH 3.4 Map6535.4RGD
RH 3.4 Map6535.4UniSTS
RH 2.0 Map6754.9RGD
SHRSP x BN Map65.4899RGD
Cytogenetic Map6q12UniSTS

Flank 2 / 1 (D6Arb3)
Rat AssemblyChrPosition (strand)Source
mRatBN7.26132,339,579 - 132,339,866 (+)MAPPER
Rnor_6.06138,064,968 - 138,065,254NCBI
Rnor_5.06147,057,574 - 147,057,860UniSTS
RGSC_v3.46138,260,348 - 138,260,635RGD
RGSC_v3.46138,260,349 - 138,260,635UniSTS
RGSC_v3.16138,266,535 - 138,266,822RGD
Celera6129,870,923 - 129,871,209UniSTS
RH 3.4 Map6783.0UniSTS
RH 3.4 Map6783.0RGD
RH 2.0 Map61125.3RGD
SHRSP x BN Map683.0399RGD
Cytogenetic Map6q32UniSTS
Strain QTL Data
Symbol Name Trait
Mcs25 Mammary carcinoma susceptibility QTL 25 mammary gland integrity trait   (VT:0010552)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_other Toxicity and tumor phenotypes are present 4143380