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Strain Registration

Strain: SS.BN-(D6Rat149-D6Rat18)/Mcwi

Symbol: SS.BN-(D6Rat149-D6Rat18)/Mcwi
Strain: SS.BN-(D6Rat149-D6Rat18)
Substrain: Mcwi
RGD ID: 4145089
Citation ID: RRID:RGD_4145089
Ontology ID: RS:0002480
Also Known As: SS.BN-(D6Rat149-D6Rat18)/Mcwi
Type: congenic
Available Source: Not Available
Origination: Medical College of Wisconsin, Milwaukee, Wisconsin
Description: SS/JrHsdMcwi were crossed with SS-6BN/Mcwi, rats from F1 were intercrossed and genotyped to get the congenic strain
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2610,894,415 - 89,763,029RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.067,009,971 - 93,706,327RGD_MAPPER_PIPELINERnor6.0
Rnor_5.066,959,479 - 103,168,177RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.467,161,389 - 93,374,504RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References

References - curated
# Reference Title Reference Citation
1. Identification of novel carcinogen-mediated mammary tumor susceptibility loci in the rat using the chromosome substitution technique. Adamovic T, et al., Genes Chromosomes Cancer. 2010 Nov;49(11):1035-45.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D6Rat149)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2610,894,415 - 10,894,565 (-)MAPPER
Rnor_6.067,009,971 - 7,010,120NCBI
Rnor_5.066,959,479 - 6,959,628UniSTS
RGSC_v3.467,161,389 - 7,161,824RGD
RGSC_v3.467,161,391 - 7,161,540UniSTS
RGSC_v3.167,161,391 - 7,161,540RGD
Celera610,601,087 - 10,601,220UniSTS
RH 3.4 Map6535.4RGD
RH 3.4 Map6535.4UniSTS
RH 2.0 Map6754.9RGD
SHRSP x BN Map65.4899RGD
Cytogenetic Map6q12UniSTS

Flank 2 / 1 (D6Rat18)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2689,762,877 - 89,763,029 (+)MAPPER
Rnor_6.0693,706,176 - 93,706,327NCBI
Rnor_5.06103,168,026 - 103,168,177UniSTS
RGSC_v3.4693,373,975 - 93,374,504RGD
RGSC_v3.4693,374,149 - 93,374,300UniSTS
RGSC_v3.1693,377,605 - 93,377,756RGD
Celera688,244,339 - 88,244,490UniSTS
RH 3.4 Map6640.5UniSTS
RH 3.4 Map6640.5RGD
RH 2.0 Map6835.6RGD
SHRSP x BN Map653.3798RGD
FHH x ACI Map664.67RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_other Toxicity and tumor phenotypes are present 4143380