Strain Report - Rat Genome Database

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Strain: SS.BN-(D6Rat149-D6Got171)/Mcwi

Symbol: SS.BN-(D6Rat149-D6Got171)/Mcwi
Strain: SS.BN-(D6Rat149-D6Got171)
Substrain: Mcwi
RGD ID: 4145090
Citation ID: RRID:RGD_4145090
Ontology ID: RS:0002481
Also Known As: SS.BN-(D6Rat149-D6Got171)/Mcwi;SS.BN-(D6Rat149-D6RatHF8)/Mcwi;SS.BN-(D6Rat149-D6RatHF8)/Mcwi; SS.BN-(D6Rat149-D6Got171)/Mcwi
Type: congenic
Available Source: Not Available
Origination: Medical College of Wisconsin, Milwaukee, Wisconsin
Description: SS/JrHsdMcwi were crossed with SS-6BN/Mcwi, rats from F1 were intercrossed and genotyped to get the congenic strain
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2610,894,415 - 118,863,044RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.067,009,971 - 123,598,338RGD_MAPPER_PIPELINERnor6.0
Rnor_5.066,959,479 - 132,827,005RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.467,161,389 - 123,782,965RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References

References - curated
# Reference Title Reference Citation
1. Identification of novel carcinogen-mediated mammary tumor susceptibility loci in the rat using the chromosome substitution technique. Adamovic T, et al., Genes Chromosomes Cancer. 2010 Nov;49(11):1035-45.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D6Rat149)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2610,894,415 - 10,894,565 (-)MAPPER
Rnor_6.067,009,971 - 7,010,120NCBI
Rnor_5.066,959,479 - 6,959,628UniSTS
RGSC_v3.467,161,389 - 7,161,824RGD
RGSC_v3.467,161,391 - 7,161,540UniSTS
RGSC_v3.167,161,391 - 7,161,540RGD
Celera610,601,087 - 10,601,220UniSTS
RH 3.4 Map6535.4RGD
RH 3.4 Map6535.4UniSTS
RH 2.0 Map6754.9RGD
SHRSP x BN Map65.4899RGD
Cytogenetic Map6q12UniSTS

Flank 2 / 1 (D6Got171)
Rat AssemblyChrPosition (strand)Source
mRatBN7.26118,862,865 - 118,863,044 (+)MAPPER
Rnor_6.06123,598,160 - 123,598,338NCBI
Rnor_5.06132,826,827 - 132,827,005UniSTS
RGSC_v3.46123,782,786 - 123,782,965RGD
RGSC_v3.46123,782,787 - 123,782,965UniSTS
RGSC_v3.16123,786,534 - 123,786,712RGD
Celera6116,404,198 - 116,404,369UniSTS
RH 3.4 Map6878.9UniSTS
RH 3.4 Map6878.9RGD
RH 2.0 Map61036.7RGD
Strain QTL Data
Symbol Name Trait
Mcs25 Mammary carcinoma susceptibility QTL 25 mammary gland integrity trait   (VT:0010552)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_other Toxicity and tumor phenotypes are present 4143380