Cldn5 (claudin 5) - Rat Genome Database

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Gene: Cldn5 (claudin 5) Mus musculus
Analyze
Symbol: Cldn5
Name: claudin 5
RGD ID: 68645
MGI Page MGI
Description: Predicted to enable structural molecule activity. Involved in negative regulation of gene expression; positive regulation of gene expression; and tight junction assembly. Located in bicellular tight junction and plasma membrane. Is expressed in several structures, including alimentary system; cardiovascular system; central nervous system; genitourinary system; and submandibular gland primordium. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human CLDN5 (claudin 5).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AI854493; brain endothelial cell clone 1 protein; claudin-5; lung-specific membrane protein; MBEC1; MGC102088; Tmvc; Tmvcf; transmembrane protein deleted in VCFS
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391618,595,597 - 18,597,012 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1618,595,597 - 18,597,012 (+)EnsemblGRCm39 Ensembl
GRCm381618,776,847 - 18,778,262 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1618,776,847 - 18,778,262 (+)EnsemblGRCm38mm10GRCm38
MGSCv371618,776,940 - 18,778,353 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361618,690,410 - 18,691,823 (+)NCBIMGSCv36mm8
Celera1619,350,901 - 19,352,314 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1611.63NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-bis(2-aminoethyl)-2-hydroxy-3-oxotriazane  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-tert-Octylphenol  (ISO)
8-Br-cAMP  (EXP)
9,10-phenanthroquinone  (ISO)
acrolein  (EXP,ISO)
ammonium chloride  (ISO)
ampicillin  (EXP)
aripiprazole  (ISO)
arsenous acid  (EXP,ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bucladesine  (EXP)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
carbon nanotube  (EXP)
carboxy-PTIO  (ISO)
CGP 52608  (ISO)
chlordecone  (EXP)
chlorpyrifos  (EXP,ISO)
choline  (EXP)
ciguatoxin CTX1B  (EXP)
cypermethrin  (EXP)
deguelin  (ISO)
dexamethasone  (ISO)
diallyl disulfide  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (EXP,ISO)
diethylstilbestrol  (EXP,ISO)
diiodine  (ISO)
dioxygen  (EXP)
dipyridamole  (EXP)
doxorubicin  (EXP)
elemental selenium  (ISO)
fenthion  (EXP)
fulvestrant  (ISO)
furan  (ISO)
gamma-linolenic acid  (ISO)
genistein  (EXP)
gentamycin  (ISO)
glycine  (ISO)
glyphosate  (ISO)
hydrogen sulfide  (EXP,ISO)
L-methionine  (EXP)
lead diacetate  (EXP,ISO)
lead(0)  (EXP,ISO)
linsidomine  (ISO)
lipopolysaccharide  (ISO)
loxoprofen  (ISO)
LY294002  (EXP,ISO)
malaoxon  (ISO)
malathion  (ISO)
medroxyprogesterone acetate  (ISO)
methamphetamine  (EXP,ISO)
methidathion  (EXP)
methylmercury chloride  (ISO)
metronidazole  (EXP)
microcystin-LR  (EXP)
minocycline  (ISO)
N-acetyl-L-cysteine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
neomycin  (EXP)
nickel atom  (ISO)
obeticholic acid  (EXP)
octhilinone  (EXP)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
p-tert-Amylphenol  (ISO)
palmitoyl ethanolamide  (ISO)
papaverine  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
perfluorohexanesulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
permethrin  (EXP)
phenobarbital  (EXP)
picoxystrobin  (ISO)
pirinixic acid  (EXP)
potassium iodide  (ISO)
progesterone  (ISO)
Pyridostigmine bromide  (EXP)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
sanguinarine  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP)
sodium sulfide (anhydrous)  (EXP)
testosterone  (EXP)
thifluzamide  (ISO)
thioacetamide  (ISO)
titanium dioxide  (ISO)
toluene  (ISO)
topotecan  (ISO)
tributylstannane  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (EXP)
triptonide  (EXP)
troglitazone  (EXP)
urethane  (ISO)
vancomycin  (EXP)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Protective effect of naringenin in experimental ischemic stroke: down-regulated NOD2, RIP2, NF-¿B, MMP-9 and up-regulated claudin-5 expression. Bai X, etal., Neurochem Res. 2014 Aug;39(8):1405-15. doi: 10.1007/s11064-014-1326-y. Epub 2014 May 20.
2. Altered distribution of tight junction proteins after intestinal ischaemia/reperfusion injury in rats. Li Q, etal., J Cell Mol Med. 2009 Sep;13(9B):4061-76. Epub 2009 Nov 19.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Claudin multigene family encoding four-transmembrane domain protein components of tight junction strands. Morita K, etal., Proc Natl Acad Sci U S A 1999 Jan 19;96(2):511-6.
7. Size-selective loosening of the blood-brain barrier in claudin-5-deficient mice. Nitta T, etal., J Cell Biol 2003 May 12;161(3):653-60.
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. Distinct claudins and associated PDZ proteins form different autotypic tight junctions in myelinating Schwann cells. Poliak S, etal., J Cell Biol 2002 Oct 28;159(2):361-72.
11. Mouse MP Annotation Import Pipeline RGD automated import pipeline
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. The CLDN5 locus may be involved in the vulnerability to schizophrenia. Sun ZY, etal., Eur Psychiatry 2004 Sep;19(6):354-7.
14. Vascular tight junction disruption and angiogenesis in spontaneously hypertensive rat with neuroinflammatory white matter injury. Yang Y, etal., Neurobiol Dis. 2018 Jun;114:95-110. doi: 10.1016/j.nbd.2018.02.012. Epub 2018 Feb 24.
Additional References at PubMed
PMID:8889548   PMID:9192844   PMID:9405660   PMID:9520948   PMID:9740669   PMID:9824655   PMID:10337614   PMID:10349636   PMID:10508865   PMID:10601346   PMID:10704284   PMID:10963672  
PMID:11042159   PMID:11076861   PMID:11217851   PMID:11331305   PMID:12435353   PMID:12477932   PMID:12734665   PMID:12823443   PMID:14576355   PMID:14614146   PMID:15366020   PMID:15489334  
PMID:15698839   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17075866   PMID:17182288   PMID:18036336   PMID:18097473   PMID:18187566   PMID:18231602   PMID:18281348   PMID:18287559  
PMID:18344992   PMID:18346943   PMID:18480174   PMID:18509865   PMID:18604199   PMID:18629939   PMID:18718461   PMID:18996436   PMID:19129494   PMID:19151727   PMID:19154719   PMID:19334288  
PMID:19407242   PMID:19423710   PMID:19494835   PMID:19571261   PMID:19665016   PMID:19706201   PMID:19726564   PMID:19821483   PMID:19910637   PMID:20080584   PMID:20203147   PMID:20333434  
PMID:20525806   PMID:20944625   PMID:21181942   PMID:21192956   PMID:21271259   PMID:21396893   PMID:21401944   PMID:21677750   PMID:21862448   PMID:21873635   PMID:21947380   PMID:22120415  
PMID:22138107   PMID:22144466   PMID:22275141   PMID:22340501   PMID:22498737   PMID:22538088   PMID:22946046   PMID:22962592   PMID:23077214   PMID:23132931   PMID:24028293   PMID:24154525  
PMID:24357327   PMID:24522189   PMID:24657919   PMID:24746419   PMID:24828040   PMID:24846172   PMID:24952961   PMID:24990151   PMID:25083995   PMID:25174580   PMID:25281324   PMID:25452572  
PMID:25691664   PMID:25729345   PMID:25753034   PMID:25753534   PMID:25812799   PMID:25853911   PMID:25978380   PMID:26006017   PMID:26265072   PMID:26409663   PMID:26515186   PMID:26630461  
PMID:26897025   PMID:26938869   PMID:27184122   PMID:27251772   PMID:27694478   PMID:27852330   PMID:28560318   PMID:28803732   PMID:28827364   PMID:29086765   PMID:29981359   PMID:30033152  
PMID:30382767   PMID:30568578   PMID:30571485   PMID:30574832   PMID:30734065   PMID:31271645   PMID:31391341   PMID:31461654   PMID:31505254   PMID:31582413   PMID:31761722   PMID:32001436  
PMID:32141492   PMID:32350344   PMID:32369449   PMID:32369453   PMID:32544090   PMID:32897857   PMID:32903671   PMID:33038259   PMID:33057196   PMID:33526661   PMID:34156149   PMID:34737342  
PMID:34933669   PMID:34951586   PMID:35019839   PMID:35050341   PMID:35303432   PMID:35332151   PMID:35338345   PMID:35422069   PMID:35444273   PMID:35471411   PMID:35861713   PMID:35894043  
PMID:35977478   PMID:36058416   PMID:36103829   PMID:36314682   PMID:36575170   PMID:36916004   PMID:36978081   PMID:37310768   PMID:37349316   PMID:37848095   PMID:37936982   PMID:38032480  
PMID:38159569   PMID:38338705   PMID:38446668  


Genomics

Comparative Map Data
Cldn5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391618,595,597 - 18,597,012 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1618,595,597 - 18,597,012 (+)EnsemblGRCm39 Ensembl
GRCm381618,776,847 - 18,778,262 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1618,776,847 - 18,778,262 (+)EnsemblGRCm38mm10GRCm38
MGSCv371618,776,940 - 18,778,353 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361618,690,410 - 18,691,823 (+)NCBIMGSCv36mm8
Celera1619,350,901 - 19,352,314 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1611.63NCBI
CLDN5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382219,523,024 - 19,525,337 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2219,523,024 - 19,527,545 (-)EnsemblGRCh38hg38GRCh38
GRCh372219,510,547 - 19,512,860 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362217,890,550 - 17,892,860 (-)NCBINCBI36Build 36hg18NCBI36
Build 342217,885,103 - 17,887,414NCBI
Celera223,362,807 - 3,365,120 (-)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef223,131,378 - 3,133,692 (-)NCBIHuRef
CHM1_12219,510,114 - 19,512,427 (-)NCBICHM1_1
T2T-CHM13v2.02219,899,865 - 19,902,178 (-)NCBIT2T-CHM13v2.0
Cldn5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81195,717,172 - 95,718,598 (-)NCBIGRCr8
mRatBN7.21182,212,822 - 82,214,248 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,211,475 - 82,214,992 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1190,944,303 - 90,945,729 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01183,605,524 - 83,606,950 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01182,659,043 - 82,660,469 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01186,356,292 - 86,357,718 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1186,356,294 - 86,357,718 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01189,458,258 - 89,459,684 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1180,993,136 - 80,994,562 (-)NCBICelera
Cytogenetic Map11q23NCBI
Cldn5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544218,509,676 - 18,510,332 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544218,509,501 - 18,511,267 (+)NCBIChiLan1.0ChiLan1.0
CLDN5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22329,148,325 - 29,150,156 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12231,696,053 - 31,697,888 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0222,282,215 - 2,286,724 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12217,957,605 - 17,962,121 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2217,958,182 - 17,959,093 (-)Ensemblpanpan1.1panPan2
CLDN5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12629,702,464 - 29,704,950 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2629,703,683 - 29,704,339 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2629,657,506 - 29,659,994 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02631,103,894 - 31,106,387 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2631,104,951 - 31,106,379 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12629,151,222 - 29,153,712 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02628,776,939 - 28,779,430 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02629,862,380 - 29,864,535 (+)NCBIUU_Cfam_GSD_1.0
Cldn5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118139,296,955 - 139,298,554 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366193,456,166 - 3,456,822 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366193,455,508 - 3,457,053 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1451,161,042 - 51,163,482 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11451,161,490 - 51,162,382 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,778,542 - 54,779,434 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLDN5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1196,227,881 - 6,230,199 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl196,228,965 - 6,229,621 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666085703,479 - 705,842 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cldn5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624747164,761 - 165,417 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624747164,113 - 166,502 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cldn5
24 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:250
Count of miRNA genes:199
Interacting mature miRNAs:227
Transcripts:ENSMUST00000043577
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141060Pbwg19_mpostnatal body weight growth 19 (mouse)Not determined16120780888Mouse
1300632Loca2_mlocomotor activity 2 (mouse)Not determined16122500574Mouse
10043879Adip25_madiposity 25 (mouse)Not determined16122520318Mouse
1301575Tanidd3_mtally ho associated non-insulin dependednt diabetes mellitus 3 (mouse)Not determined16122897739Mouse
4141468Nhdlq10_mnon-HDL QTL 10 (mouse)Not determined16124263853Mouse
1301970Heal11_mwound healing/regeneration 11 (mouse)Not determined16124263853Mouse
1301384Dice1_mdetermination of interleukin 4 commitment 1 (mouse)Not determined16128434358Mouse
10402497Lmr23_mleishmaniasis resistance 23 (mouse)Not determined16129674200Mouse
1301559Bbaa19_mB.burgdorferi-associated arthritis 19 (mouse)Not determined16130066977Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130814572Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16647700935021216Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
4142460Nilac10_mnicotine induced locomotor activity 10 (mouse)Not determined16713690629225471Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
15092082Igly9_mIgG glycosylation 9, GP17b (mouse)161477522320103513Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161480292148803032Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161552290949523112Mouse

Markers in Region
Cldn5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381618,776,996 - 18,777,635UniSTSGRCm38
MGSCv371618,777,089 - 18,777,728UniSTSGRCm37
Celera1619,351,050 - 19,351,689UniSTS
Cytogenetic Map16A3UniSTS
cM Map1611.65UniSTS
cM Map1611.65UniSTS
AF035814  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381618,777,790 - 18,777,888UniSTSGRCm38
MGSCv371618,777,883 - 18,777,981UniSTSGRCm37
Celera1619,351,844 - 19,351,942UniSTS
Cytogenetic Map16A3UniSTS
cM Map1611.65UniSTS
Whitehead/MRC_RH16155.83UniSTS
Whitehead/MRC_RH16152.06UniSTS
Cldn5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381618,777,101 - 18,777,595UniSTSGRCm38
MGSCv371618,777,194 - 18,777,688UniSTSGRCm37
Celera1619,351,155 - 19,351,649UniSTS
Cytogenetic Map16A3UniSTS
cM Map1611.65UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000043577   ⟹   ENSMUSP00000041925
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1618,595,597 - 18,597,012 (+)Ensembl
GRCm38.p6 Ensembl1618,776,847 - 18,778,262 (+)Ensembl
RefSeq Acc Id: NM_013805   ⟹   NP_038833
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391618,595,597 - 18,597,012 (+)NCBI
GRCm381618,776,847 - 18,778,262 (+)ENTREZGENE
MGSCv371618,776,940 - 18,778,353 (+)RGD
Celera1619,350,901 - 19,352,316 (+)ENTREZGENE
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_038833   ⟸   NM_013805
- UniProtKB: O88789 (UniProtKB/Swiss-Prot),   O54942 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000041925   ⟸   ENSMUST00000043577

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O54942-F1-model_v2 AlphaFold O54942 1-218 view protein structure

Promoters
RGD ID:6826916
Promoter ID:MM_KWN:20405
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Liver,   Lung
Transcripts:NM_013805
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361618,776,729 - 18,777,229 (+)MPROMDB
RGD ID:8685694
Promoter ID:EPDNEW_M20878
Type:multiple initiation site
Name:Cldn5_1
Description:Mus musculus claudin 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381618,776,847 - 18,776,907EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1276112 AgrOrtholog
Ensembl Genes ENSMUSG00000041378 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000043577 ENTREZGENE
  ENSMUST00000043577.3 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.140.150 UniProtKB/Swiss-Prot
InterPro Claudin UniProtKB/Swiss-Prot
  Claudin5 UniProtKB/Swiss-Prot
  Claudin_CS UniProtKB/Swiss-Prot
  PMP22/EMP/MP20/Claudin UniProtKB/Swiss-Prot
KEGG Report mmu:12741 UniProtKB/Swiss-Prot
MGD MGI:1276112 ENTREZGENE
NCBI Gene 12741 ENTREZGENE
PANTHER CLAUDIN-5 UniProtKB/Swiss-Prot
  PTHR12002 UniProtKB/Swiss-Prot
Pfam PMP22_Claudin UniProtKB/Swiss-Prot
PhenoGen Cldn5 PhenoGen
PRINTS CLAUDIN UniProtKB/Swiss-Prot
  CLAUDIN5 UniProtKB/Swiss-Prot
PROSITE CLAUDIN UniProtKB/Swiss-Prot
UniProt CLD5_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  O88789 ENTREZGENE
UniProt Secondary O88789 UniProtKB/Swiss-Prot