Trpv1 (transient receptor potential cation channel, subfamily V, member 1) - Rat Genome Database

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Gene: Trpv1 (transient receptor potential cation channel, subfamily V, member 1) Mus musculus
Analyze
Symbol: Trpv1
Name: transient receptor potential cation channel, subfamily V, member 1
RGD ID: 1552559
MGI Page MGI
Description: Enables calcium channel activity; identical protein binding activity; and temperature-gated ion channel activity. Involved in detection of temperature stimulus involved in sensory perception of pain; monoatomic ion transmembrane transport; and negative regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including detection of stimulus involved in sensory perception; diet induced thermogenesis; and fever generation. Located in neuron projection and plasma membrane. Is active in GABA-ergic synapse and postsynaptic membrane. Is expressed in central nervous system; cochlea; dorsal root ganglion; and eye. Human ortholog(s) of this gene implicated in migraine. Orthologous to human TRPV1 (transient receptor potential cation channel subfamily V member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: capsaicin receptor; cation channel; deltaN-TRPv1; osm-9-like TRP channel 1; OTR; OTRPC1; transient receptor potential cation channel subfamily V member 1; transient receptor potential cation channel V1; TRPV1alpha; TRPV1beta; V; vanilloid receptor 1; vanilloid receptor subtype 1; VR; VR-1; Vr1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,124,975 - 73,152,148 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1173,125,118 - 73,152,068 (+)EnsemblGRCm39 Ensembl
GRCm381173,234,149 - 73,261,322 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,234,292 - 73,261,242 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,051,761 - 73,074,009 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,054,454 - 73,076,702 (+)NCBIMGSCv36mm8
Celera1180,775,520 - 80,797,773 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1145.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (EXP,ISO)
(R)-camphor  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
1,2-naphthoquinone  (ISO)
17beta-estradiol  (ISO)
1H-benzimidazole  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3-bis(4-hydroxyphenyl)propionitrile  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2-arachidonoylglycerol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP,ISO)
3-phenylprop-2-enal  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
4-methyl-3-[[1-oxo-2-(propylamino)propyl]amino]-2-thiophenecarboxylic acid methyl ester  (ISO)
6-propyl-2-thiouracil  (ISO)
8-(4-chlorophenylthio)-cAMP  (ISO)
acrolein  (EXP)
acrylamide  (ISO)
adenosine 5'-[gamma-thio]triphosphate  (ISO)
aflatoxin B1  (ISO)
allicin  (ISO)
allyl isothiocyanate  (EXP,ISO)
alpha-linolenic acid  (ISO)
alpha-Zearalanol  (EXP)
amitriptyline  (ISO)
anandamide  (ISO)
antimycin A  (ISO)
arachidonic acid  (ISO)
aristolochic acid A  (ISO)
aspartame  (ISO)
ATP  (ISO)
azoxystrobin  (ISO)
Benzamil  (EXP,ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bupivacaine  (ISO)
cadmium atom  (ISO)
calcium atom  (EXP,ISO)
calcium dichloride  (EXP,ISO)
calcium dihydroxide  (ISO)
calcium(0)  (EXP,ISO)
camphor  (ISO)
Cannabichromene  (EXP,ISO)
cannabidiol  (EXP,ISO)
cannabidiolic acid  (ISO)
Cannabidivarin  (EXP,ISO)
cannabigerol  (ISO)
cannabigerolic acid  (ISO)
capsaicin  (EXP,ISO)
capsazepine  (EXP,ISO)
carbon dioxide  (ISO)
chelerythrine  (ISO)
citric acid  (ISO)
citronellol  (ISO)
citronellol acetate  (EXP)
cobalt atom  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (EXP,ISO)
CP-96345(1+)  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
cytarabine  (ISO)
decabromodiphenyl ether  (ISO)
deguelin  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
dibutyl phthalate  (EXP)
dodecyl hydrogen sulfate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
ethylene glycol bis(2-aminoethyl)tetraacetic acid  (ISO)
ethylenediaminetetraacetic acid  (ISO)
etoposide  (ISO)
fenpyroximate  (ISO)
fenvalerate  (ISO)
formaldehyde  (EXP,ISO)
fulvestrant  (ISO)
gamma-linolenic acid  (ISO)
geldanamycin  (ISO)
genistein  (ISO)
gentamycin  (ISO)
geraniol  (ISO)
Goe 6976  (ISO)
hydrogen chloride  (EXP,ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ionomycin  (EXP,ISO)
iron(2+) sulfate (anhydrous)  (ISO)
isophorone  (ISO)
ivermectin  (ISO)
L-ascorbic acid  (ISO)
Lafutidine  (ISO)
leflunomide  (ISO)
lidocaine  (EXP,ISO)
linoleic acid  (EXP)
lipopolysaccharide  (EXP,ISO)
LY294002  (EXP)
masoprocol  (ISO)
Mecamylamine  (ISO)
melatonin  (EXP)
melittin  (ISO)
mepivacaine  (ISO)
methamphetamine  (EXP)
methapyrilene  (ISO)
methyllycaconitine  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
morphine  (EXP,ISO)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (ISO)
N-oleoyldopamine  (ISO)
N-Vanillyloleamide  (ISO)
nickel atom  (ISO)
nicotine  (ISO)
nitroprusside  (ISO)
nonivamide  (ISO)
Nordihydrocapsaicin  (ISO)
NS-398  (ISO)
olanzapine  (EXP)
oleanolic acid  (ISO)
ozone  (EXP)
p-menthan-3-ol  (ISO)
palmitoyl ethanolamide  (ISO)
phenylarsine oxide  (ISO)
phenylephrine  (EXP)
phenylmethanesulfonyl fluoride  (ISO)
phorbol 12,13-dibutanoate  (ISO)
phorbol 13-acetate 12-myristate  (EXP,ISO)
pinostrobin  (ISO)
potassium chromate  (ISO)
procaine  (ISO)
pyrimidifen  (ISO)
quercetin  (ISO)
reactive oxygen species  (EXP)
resiniferatoxin  (EXP,ISO)
ricinoleic acid  (ISO)
rimonabant  (ISO)
rotenone  (ISO)
rottlerin  (EXP)
ruthenium red  (EXP,ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
saccharin  (EXP,ISO)
SB 203580  (ISO)
SB 431542  (ISO)
serotonin  (ISO)
sodium arsenite  (EXP,ISO)
sodium atom  (EXP,ISO)
sodium chloride  (EXP,ISO)
tacrolimus hydrate  (EXP,ISO)
tamoxifen  (ISO)
tebufenpyrad  (ISO)
tetracaine  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topiramate  (ISO)
tributylstannane  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triptonide  (EXP)
Triton X-100  (ISO)
tyrphostin AG 1478  (EXP)
U-73122  (ISO)
valproic acid  (ISO)
WIN 55212-2  (ISO)
wortmannin  (EXP)
xenon atom  (ISO)
xenon(0)  (ISO)
zinc sulfate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
behavioral response to pain  (IDA,IMP)
calcium ion import across plasma membrane  (IBA,ISO)
calcium ion transmembrane transport  (ISO)
calcium ion transport  (IDA,IMP,ISO)
cellular response to acidic pH  (ISO)
cellular response to alkaloid  (ISO)
cellular response to ATP  (ISO)
cellular response to cytokine stimulus  (ISO)
cellular response to growth factor stimulus  (ISO)
cellular response to heat  (ISO)
cellular response to nerve growth factor stimulus  (ISO)
cellular response to temperature stimulus  (ISO)
cellular response to tumor necrosis factor  (ISO)
detection of chemical stimulus involved in sensory perception of pain  (IDA,IMP)
detection of temperature stimulus involved in sensory perception of pain  (IGI,IMP)
detection of temperature stimulus involved in thermoception  (IDA)
diet induced thermogenesis  (IMP)
fever generation  (IMP)
glutamate secretion  (ISO)
lipid metabolic process  (IMP)
microglial cell activation  (ISO)
monoatomic cation transport  (ISA)
monoatomic ion transmembrane transport  (IMP)
monoatomic ion transport  (IEA)
negative regulation of establishment of blood-brain barrier  (ISO)
negative regulation of heart rate  (ISO)
negative regulation of mitochondrial membrane potential  (ISO)
negative regulation of systemic arterial blood pressure  (ISO)
negative regulation of transcription by RNA polymerase II  (IMP)
peptide secretion  (IMP)
positive regulation of apoptotic process  (ISO)
positive regulation of cytosolic calcium ion concentration  (ISO)
positive regulation of nitric oxide biosynthetic process  (ISO)
protein homotetramerization  (ISO)
response to capsazepine  (ISO)
response to heat  (IMP,ISO)
response to pain  (IDA,IMP)
response to peptide hormone  (ISO)
response to pH  (IMP,ISO)
sensory perception of mechanical stimulus  (IMP)
sensory perception of pain  (IMP)
smooth muscle contraction involved in micturition  (IMP)
temperature homeostasis  (IMP)
thermoception  (ISO)
transmembrane transport  (IEA)
urinary bladder smooth muscle contraction  (IMP)

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal action potential  (IAGP)
abnormal behavior  (IAGP)
abnormal chemokine secretion  (IAGP)
abnormal hair cycle  (IAGP)
abnormal hair cycle catagen phase  (IAGP)
abnormal hair cycle telogen phase  (IAGP)
abnormal mechanical nociception  (IAGP)
abnormal nervous system electrophysiology  (IAGP)
abnormal neuron physiology  (IAGP)
abnormal neuronal precursor proliferation  (IAGP)
abnormal nociception after inflammation  (IAGP)
abnormal physiological response to xenobiotic  (IAGP)
abnormal renal tubule morphology  (IAGP)
abnormal response of heart to induced stress  (IAGP)
abnormal righting response  (IAGP)
abnormal sensory neuron physiology  (IAGP)
abnormal taste sensitivity  (IAGP)
abnormal thermal nociception  (IAGP)
abnormal urination  (IAGP)
abnormal urine homeostasis  (IAGP)
alcohol preference  (IAGP)
decreased abdominal fat pad weight  (IAGP)
decreased anxiety-related response  (IAGP)
decreased fat cell size  (IAGP)
decreased fluid intake  (IAGP)
decreased left ventricle diastolic pressure  (IAGP)
decreased subcutaneous adipose tissue amount  (IAGP)
decreased susceptibility to diet-induced hepatic steatosis  (IAGP)
decreased susceptibility to diet-induced obesity  (IAGP)
decreased susceptibility to endotoxin shock  (IAGP)
decreased susceptibility to induced hypothermia  (IAGP)
decreased synaptic depression  (IAGP)
glomerulosclerosis  (IAGP)
hypoalgesia  (IAGP)
impaired ability to fire action potentials  (IAGP)
impaired behavioral response to alcohol  (IAGP)
impaired contextual conditioning behavior  (IAGP)
impaired coordination  (IAGP)
impaired cued conditioning behavior  (IAGP)
impaired febrile response  (IAGP)
increased alcohol consumption  (IAGP)
increased blood osmolality  (IAGP)
increased body weight  (IAGP)
increased chemical nociceptive threshold  (IAGP)
increased coronary flow rate  (IAGP)
increased incidence of tumors by chemical induction  (IAGP)
increased interleukin-6 secretion  (IAGP)
increased left ventricle developed pressure  (IAGP)
increased pruritus  (IAGP)
increased susceptibility to injury  (IAGP)
increased thermal nociceptive threshold  (IAGP)
increased tumor necrosis factor secretion  (IAGP)
increased urine protein level  (IAGP)
kidney inflammation  (IAGP)
reduced long-term depression  (IAGP)
reduced long-term potentiation  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. SNP variants within the vanilloid TRPV1 and TRPV3 receptor genes are associated with migraine in the Spanish population. Carreno O, etal., Am J Med Genet B Neuropsychiatr Genet. 2012 Jan;159B(1):94-103. doi: 10.1002/ajmg.b.32007. Epub 2011 Dec 7.
2. A capsaicin-receptor homologue with a high threshold for noxious heat. Caterina MJ, etal., Nature 1999 Apr 1;398(6726):436-41.
3. Inhibition of transient potential receptor vanilloid type 1 suppresses seizure susceptibility in the genetically epilepsy-prone rat. Cho SJ, etal., CNS Neurosci Ther. 2017 Nov 3. doi: 10.1111/cns.12770.
4. Transient Receptor Potential Vanilloid 1 Regulates Mitochondrial Membrane Potential and Myocardial Reperfusion Injury. Hurt CM, etal., J Am Heart Assoc. 2016 Sep 26;5(9). pii: JAHA.116.003774. doi: 10.1161/JAHA.116.003774.
5. Up-regulation of dorsal root ganglia BDNF and trkB receptor in inflammatory pain: an in vivo and in vitro study. Lin YT, etal., J Neuroinflammation. 2011 Sep 30;8:126. doi: 10.1186/1742-2094-8-126.
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. MGD IEA MGD IEA
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10398684   PMID:10764638   PMID:10821274   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11466438   PMID:11498051   PMID:11814652   PMID:11825677   PMID:11893340  
PMID:12016205   PMID:12095983   PMID:12161756   PMID:12466851   PMID:12654248   PMID:12853424   PMID:12906843   PMID:14633515   PMID:14672807   PMID:14985435   PMID:15016100   PMID:15036590  
PMID:15065123   PMID:15121805   PMID:15128843   PMID:15128844   PMID:15135917   PMID:15146042   PMID:15193774   PMID:15194687   PMID:15234965   PMID:15254097   PMID:15266010   PMID:15331673  
PMID:15489017   PMID:15499026   PMID:15509739   PMID:15561438   PMID:15639479   PMID:15738113   PMID:15738186   PMID:15763167   PMID:15793000   PMID:15831443   PMID:15883036   PMID:15911156  
PMID:15917451   PMID:15927378   PMID:15928404   PMID:15946967   PMID:15979214   PMID:16081411   PMID:16091555   PMID:16133936   PMID:16140298   PMID:16141072   PMID:16141073   PMID:16142452  
PMID:16150543   PMID:16165301   PMID:16188326   PMID:16200599   PMID:16306411   PMID:16314376   PMID:16319926   PMID:16327782   PMID:16446141   PMID:16460286   PMID:16501934   PMID:16515841  
PMID:16564032   PMID:16566843   PMID:16580148   PMID:16584841   PMID:16602821   PMID:16603318   PMID:16645591   PMID:16687502   PMID:16793902   PMID:16914684   PMID:16930289   PMID:16943565  
PMID:16945484   PMID:16973277   PMID:16996476   PMID:16996800   PMID:17074976   PMID:17082722   PMID:17174891   PMID:17194758   PMID:17196854   PMID:17234959   PMID:17237150   PMID:17251322  
PMID:17251423   PMID:17257750   PMID:17329430   PMID:17347480   PMID:17480026   PMID:17492627   PMID:17508360   PMID:17553423   PMID:17553498   PMID:17575321   PMID:17584831   PMID:17586621  
PMID:17601984   PMID:17626206   PMID:17627983   PMID:17632091   PMID:17640182   PMID:17767493   PMID:17851089   PMID:17959807   PMID:17975130   PMID:18065157   PMID:18089839   PMID:18163477  
PMID:18172555   PMID:18204441   PMID:18226966   PMID:18230619   PMID:18249134   PMID:18272293   PMID:18272658   PMID:18297068   PMID:18312687   PMID:18341983   PMID:18341994   PMID:18343036  
PMID:18362111   PMID:18378339   PMID:18391945   PMID:18437086   PMID:18439403   PMID:18445509   PMID:18455988   PMID:18463244   PMID:18495351   PMID:18498732   PMID:18498735   PMID:18499726  
PMID:18503767   PMID:18516971   PMID:18538749   PMID:18562209   PMID:18567714   PMID:18568022   PMID:18574153   PMID:18574245   PMID:18606907   PMID:18607942   PMID:18652806   PMID:18706490  
PMID:18754773   PMID:18757526   PMID:18789524   PMID:18789982   PMID:18804451   PMID:18839303   PMID:18930149   PMID:18938188   PMID:19010598   PMID:19029406   PMID:19114647   PMID:19155296  
PMID:19159661   PMID:19202458   PMID:19231080   PMID:19243225   PMID:19244541   PMID:19322198   PMID:19348729   PMID:19372621   PMID:19406878   PMID:19419422   PMID:19439586   PMID:19445917  
PMID:19458046   PMID:19473241   PMID:19482068   PMID:19497956   PMID:19531269   PMID:19562439   PMID:19564617   PMID:19633070   PMID:19675234   PMID:19683814   PMID:19705551   PMID:19794112  
PMID:19812353   PMID:19815011   PMID:19834762   PMID:19839244   PMID:19853036   PMID:19858408   PMID:19887954   PMID:19893614   PMID:19958811   PMID:20006972   PMID:20015699   PMID:20089896  
PMID:20100279   PMID:20142268   PMID:20144892   PMID:20205720   PMID:20219639   PMID:20231274   PMID:20237234   PMID:20303589   PMID:20351268   PMID:20357111   PMID:20383154   PMID:20411352  
PMID:20424317   PMID:20451324   PMID:20483957   PMID:20534813   PMID:20660715   PMID:20674858   PMID:20685973   PMID:20826794   PMID:20833132   PMID:20837524   PMID:20858240   PMID:20862299  
PMID:20884333   PMID:20932849   PMID:20951772   PMID:21040852   PMID:21069423   PMID:21076423   PMID:21076424   PMID:21098484   PMID:21127383   PMID:21139565   PMID:21185837   PMID:21224382  
PMID:21246380   PMID:21267068   PMID:21289181   PMID:21300867   PMID:21300878   PMID:21315593   PMID:21337373   PMID:21345654   PMID:21357419   PMID:21359147   PMID:21360511   PMID:21364461  
PMID:21383614   PMID:21451044   PMID:21493704   PMID:21514666   PMID:21539840   PMID:21549810   PMID:21555074   PMID:21562271   PMID:21620379   PMID:21628499   PMID:21641388   PMID:21672630  
PMID:21677750   PMID:21705674   PMID:21708890   PMID:21720176   PMID:21752988   PMID:21763756   PMID:21779403   PMID:21792478   PMID:21814047   PMID:21832173   PMID:21852608   PMID:21868092  
PMID:21873635   PMID:21908651   PMID:21931742   PMID:21945863   PMID:21949157   PMID:21949864   PMID:21957141   PMID:21957263   PMID:21994383   PMID:22016541   PMID:22080974   PMID:22090315  
PMID:22101604   PMID:22139792   PMID:22184011   PMID:22214765   PMID:22321194   PMID:22330338   PMID:22389490   PMID:22395410   PMID:22396497   PMID:22412190   PMID:22434066   PMID:22434189  
PMID:22451268   PMID:22492526   PMID:22493235   PMID:22542657   PMID:22547700   PMID:22565312   PMID:22570472   PMID:22581043   PMID:22610171   PMID:22632722   PMID:22634729   PMID:22641084  
PMID:22694790   PMID:22723178   PMID:22724881   PMID:22753949   PMID:22787056   PMID:22820645   PMID:22828515   PMID:22850668   PMID:22858856   PMID:22865090   PMID:22933780   PMID:22952227  
PMID:22971321   PMID:22982038   PMID:22982061   PMID:23021218   PMID:23025809   PMID:23034900   PMID:23035099   PMID:23054171   PMID:23071662   PMID:23074220   PMID:23139219   PMID:23147107  
PMID:23150506   PMID:23152109   PMID:23202294   PMID:23223305   PMID:23263443   PMID:23264624   PMID:23266932   PMID:23271050   PMID:23305398   PMID:23410158   PMID:23453702   PMID:23468425  
PMID:23482327   PMID:23497345   PMID:23508958   PMID:23536068   PMID:23536486   PMID:23536811   PMID:23607427   PMID:23637043   PMID:23639808   PMID:23668392   PMID:23671638   PMID:23685168  
PMID:23689362   PMID:23707246   PMID:23720338   PMID:23722916   PMID:23799042   PMID:23843517   PMID:23856068   PMID:23892554   PMID:23925292   PMID:23948212   PMID:23965627   PMID:23989007  
PMID:23993788   PMID:24005250   PMID:24028645   PMID:24036102   PMID:24102723   PMID:24130809   PMID:24133266   PMID:24155319   PMID:24162023   PMID:24188863   PMID:24200896   PMID:24211590  
PMID:24212670   PMID:24221085   PMID:24269027   PMID:24305062   PMID:24308803   PMID:24312267   PMID:24312564   PMID:24322617   PMID:24351908   PMID:24384226   PMID:24434730   PMID:24445575  
PMID:24462040   PMID:24487914   PMID:24516396   PMID:24550768   PMID:24569998   PMID:24573275   PMID:24597602   PMID:24612851   PMID:24641282   PMID:24695785   PMID:24698267   PMID:24704367  
PMID:24708859   PMID:24732880   PMID:24743737   PMID:24781945   PMID:24812665   PMID:24838827   PMID:24855942   PMID:24872553   PMID:24890824   PMID:24920628   PMID:24925072   PMID:24952961  
PMID:24957987   PMID:25030910   PMID:25049382   PMID:25049388   PMID:25069877   PMID:25083990   PMID:25088915   PMID:25092424   PMID:25100078   PMID:25123336   PMID:25139109   PMID:25139591  
PMID:25151644   PMID:25210497   PMID:25242356   PMID:25282159   PMID:25297838   PMID:25303527   PMID:25314299   PMID:25330307   PMID:25339153   PMID:25369838   PMID:25372661   PMID:25392504  
PMID:25421513   PMID:25429137   PMID:25447051   PMID:25489075   PMID:25501034   PMID:25505315   PMID:25568328   PMID:25585624   PMID:25615623   PMID:25637531   PMID:25640077   PMID:25650182  
PMID:25679765   PMID:25713512   PMID:25713995   PMID:25733887   PMID:25734989   PMID:25746468   PMID:25752528   PMID:25761879   PMID:25775089   PMID:25781982   PMID:25787958   PMID:25830814  
PMID:25834056   PMID:25839032   PMID:25848051   PMID:25888600   PMID:25905588   PMID:25955385   PMID:25997690   PMID:26010461   PMID:26021808   PMID:26043006   PMID:26054036   PMID:26074006  
PMID:26084409   PMID:26136480   PMID:26157003   PMID:26183651   PMID:26193120   PMID:26208267   PMID:26224686   PMID:26278050   PMID:26285043   PMID:26311398   PMID:26314785   PMID:26319554  
PMID:26387947   PMID:26420335   PMID:26456642   PMID:26472811   PMID:26494286   PMID:26516054   PMID:26521042   PMID:26621679   PMID:26635025   PMID:26643862   PMID:26692169   PMID:26700618  
PMID:26763435   PMID:26843581   PMID:26855542   PMID:26892397   PMID:26902776   PMID:26915043   PMID:26947234   PMID:27030715   PMID:27084583   PMID:27126687   PMID:27144598   PMID:27150432  
PMID:27167081   PMID:27170124   PMID:27174467   PMID:27188969   PMID:27232578   PMID:27252474   PMID:27255083   PMID:27263974   PMID:27356469   PMID:27388773   PMID:27412859   PMID:27436359  
PMID:27449282   PMID:27455110   PMID:27531673   PMID:27566399   PMID:27633915   PMID:27654891   PMID:27655547   PMID:27682362   PMID:27698114   PMID:27721373   PMID:27758889   PMID:27762319  
PMID:27774580   PMID:27791151   PMID:27798132   PMID:27810513   PMID:27827430   PMID:27840000   PMID:27864077   PMID:27896621   PMID:27923234   PMID:27956799   PMID:27974205   PMID:27979980  
PMID:28092666   PMID:28153725   PMID:28158279   PMID:28162808   PMID:28176353   PMID:28225019   PMID:28231466   PMID:28242764   PMID:28360106   PMID:28402861   PMID:28410268   PMID:28439004  
PMID:28479337   PMID:28489079   PMID:28516219   PMID:28532657   PMID:28554243   PMID:28583049   PMID:28637794   PMID:28644897   PMID:28655587   PMID:28658621   PMID:28669718   PMID:28669862  
PMID:28683326   PMID:28701511   PMID:28722015   PMID:28722259   PMID:28734766   PMID:28754711   PMID:28817806   PMID:28827659   PMID:28890086   PMID:28931832   PMID:28936180   PMID:28971837  
PMID:28977586   PMID:28986540   PMID:29018170   PMID:29054601   PMID:29057902   PMID:29081531   PMID:29117570   PMID:29132095   PMID:29138447   PMID:29141003   PMID:29176651   PMID:29192128  
PMID:29192190   PMID:29247238   PMID:29286076   PMID:29289470   PMID:29295977   PMID:29317663   PMID:29334670   PMID:29335450   PMID:29343767   PMID:29378958   PMID:29379798   PMID:29386116  
PMID:29424270   PMID:29465314   PMID:29474476   PMID:29497363   PMID:29505031   PMID:29539642   PMID:29625231   PMID:29660342   PMID:29670121   PMID:29689050   PMID:29733975   PMID:29734380  
PMID:29739958   PMID:29754819   PMID:29768200   PMID:29768498   PMID:29789376   PMID:29791836   PMID:29795268   PMID:29806907   PMID:29808083   PMID:29854941   PMID:29864146   PMID:29867077  
PMID:29890293   PMID:29910119   PMID:29920354   PMID:29929188   PMID:29971480   PMID:29985388   PMID:29985973   PMID:30037926   PMID:30038260   PMID:30041768   PMID:30065629   PMID:30082422  
PMID:30089031   PMID:30116771   PMID:30121230   PMID:30204499   PMID:30240621   PMID:30240782   PMID:30289972   PMID:30335684   PMID:30341332   PMID:30355052   PMID:30381083   PMID:30386208  
PMID:30417826   PMID:30456702   PMID:30527377   PMID:30575436   PMID:30636360   PMID:30637823   PMID:30652078   PMID:30659173   PMID:30708321   PMID:30712871   PMID:30738091   PMID:30795543  
PMID:30811405   PMID:30838324   PMID:30842533   PMID:30895621   PMID:30914247   PMID:30917309   PMID:30917312   PMID:30925455   PMID:30940767   PMID:30974795   PMID:30989631   PMID:31012378  
PMID:31075226   PMID:31086183   PMID:31104844   PMID:31142341   PMID:31155288   PMID:31197191   PMID:31204282   PMID:31213294   PMID:31229503   PMID:31270160   PMID:31281589   PMID:31285762  
PMID:31328162   PMID:31333464   PMID:31390558   PMID:31390574   PMID:31401394   PMID:31408376   PMID:31471389   PMID:31487269   PMID:31513001   PMID:31563651   PMID:31573117   PMID:31620023  
PMID:31641116   PMID:31664854   PMID:31676602   PMID:31680864   PMID:31708101   PMID:31721360   PMID:31722723   PMID:31814000   PMID:31818976   PMID:31831522   PMID:31831729   PMID:31850343  
PMID:31874139   PMID:31883821   PMID:31911949   PMID:31914619   PMID:31996391   PMID:32060036   PMID:32061032   PMID:32061660   PMID:32084332   PMID:32089077   PMID:32102913   PMID:32198181  
PMID:32208171   PMID:32213287   PMID:32268102   PMID:32273850   PMID:32293931   PMID:32293932   PMID:32294435   PMID:32385136   PMID:32404326   PMID:32472067   PMID:32573694   PMID:32579702  
PMID:32584793   PMID:32598448   PMID:32609392   PMID:32640285   PMID:32656346   PMID:32721035   PMID:32735781   PMID:32760089   PMID:32764237   PMID:32764714   PMID:32801314   PMID:32841712  
PMID:32862473   PMID:32863706   PMID:32871748   PMID:32894469   PMID:32935246   PMID:32960817   PMID:32965166   PMID:33010342   PMID:33027667   PMID:33045060   PMID:33060203   PMID:33125586  
PMID:33158961   PMID:33317522   PMID:33440224   PMID:33450207   PMID:33468207   PMID:33476547   PMID:33487631   PMID:33505248   PMID:33529249   PMID:33550097   PMID:33668926   PMID:33705350  
PMID:33707294   PMID:33722956   PMID:33744254   PMID:33753496   PMID:33782967   PMID:33789102   PMID:33812858   PMID:33819485   PMID:33824316   PMID:33827400   PMID:33846638   PMID:33846639  
PMID:33857021   PMID:33884443   PMID:33888605   PMID:33891950   PMID:33918267   PMID:33941650   PMID:33977527   PMID:33998138   PMID:34043943   PMID:34068557   PMID:34069822   PMID:34079465  
PMID:34205555   PMID:34309810   PMID:34318289   PMID:34338291   PMID:34439832   PMID:34473953   PMID:34569661   PMID:34639197   PMID:34755897   PMID:34768199   PMID:34774500   PMID:34804016  
PMID:34858142   PMID:34884463   PMID:34907173   PMID:34920021   PMID:34932943   PMID:34950149   PMID:34954202   PMID:34986325   PMID:34996439   PMID:35007556   PMID:35020949   PMID:35027408  
PMID:35043013   PMID:35060414   PMID:35077502   PMID:35095413   PMID:35115501   PMID:35148462   PMID:35153665   PMID:35197406   PMID:35197629   PMID:35260737   PMID:35263573   PMID:35298670  
PMID:35365503   PMID:35370552   PMID:35385340   PMID:35385753   PMID:35599331   PMID:35606653   PMID:35610647   PMID:35643078   PMID:35680973   PMID:35697861   PMID:35705043   PMID:35705684  
PMID:35806020   PMID:35875660   PMID:35881904   PMID:35900227   PMID:35904071   PMID:35905972   PMID:35909891   PMID:35921703   PMID:36049541   PMID:36137413   PMID:36217034   PMID:36229601  
PMID:36323255   PMID:36369193   PMID:36436910   PMID:36472910   PMID:36478100   PMID:36563677   PMID:36563905   PMID:36640762   PMID:36669703   PMID:36719418   PMID:36720919   PMID:36724558  
PMID:36750138   PMID:36768836   PMID:36777644   PMID:36870285   PMID:36898840   PMID:36930731   PMID:36937045   PMID:37033371   PMID:37054767   PMID:37059266   PMID:37070458   PMID:37101198  
PMID:37156112   PMID:37192624   PMID:37460788   PMID:37482284   PMID:37585189   PMID:37641913   PMID:37689594   PMID:37690945   PMID:37851573   PMID:37989590   PMID:38047304   PMID:38109366  
PMID:38157977   PMID:38178640   PMID:38180747   PMID:38236300   PMID:38325553   PMID:38474148  


Genomics

Comparative Map Data
Trpv1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,124,975 - 73,152,148 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1173,125,118 - 73,152,068 (+)EnsemblGRCm39 Ensembl
GRCm381173,234,149 - 73,261,322 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,234,292 - 73,261,242 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,051,761 - 73,074,009 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,054,454 - 73,076,702 (+)NCBIMGSCv36mm8
Celera1180,775,520 - 80,797,773 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1145.25NCBI
TRPV1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38173,565,446 - 3,609,411 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl173,565,444 - 3,609,411 (-)EnsemblGRCh38hg38GRCh38
GRCh37173,468,740 - 3,512,705 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36173,415,490 - 3,459,454 (-)NCBINCBI36Build 36hg18NCBI36
Build 34173,415,490 - 3,442,920NCBI
Celera173,482,474 - 3,526,423 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef173,360,449 - 3,404,458 (-)NCBIHuRef
CHM1_1173,479,568 - 3,523,488 (-)NCBICHM1_1
T2T-CHM13v2.0173,454,482 - 3,498,442 (-)NCBIT2T-CHM13v2.0
Trpv1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81058,349,936 - 58,375,021 (+)NCBIGRCr8
mRatBN7.21057,851,428 - 57,876,513 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1057,851,428 - 57,876,513 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1062,507,115 - 62,532,567 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01061,995,582 - 62,021,036 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01057,494,713 - 57,520,165 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01059,799,123 - 59,824,208 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1059,799,123 - 59,824,679 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01059,538,296 - 59,563,441 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41060,109,656 - 60,134,939 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11060,123,278 - 60,148,562 (+)NCBI
Celera1056,974,294 - 56,999,462 (+)NCBICelera
Cytogenetic Map10q24NCBI
Trpv1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546713,221,391 - 13,239,089 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546713,221,391 - 13,239,089 (+)NCBIChiLan1.0ChiLan1.0
TRPV1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21911,174,137 - 11,202,410 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11713,139,730 - 13,184,632 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0173,612,781 - 3,658,608 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1173,609,952 - 3,655,011 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl173,609,952 - 3,637,579 (-)Ensemblpanpan1.1panPan2
TRPV1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1947,404,987 - 47,443,871 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl947,404,972 - 47,431,926 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha946,568,483 - 46,594,656 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0948,249,767 - 48,289,671 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl948,249,763 - 48,277,725 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1947,022,952 - 47,055,374 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0947,316,168 - 47,344,663 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0947,371,882 - 47,400,241 (-)NCBIUU_Cfam_GSD_1.0
Trpv1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560255,578,132 - 55,623,675 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936677276,994 - 327,025 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936677277,304 - 326,907 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPV1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1249,677,291 - 49,713,977 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11249,676,536 - 49,709,634 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21251,536,224 - 51,560,849 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRPV1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1163,071,158 - 3,091,068 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl163,071,526 - 3,090,330 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605918,732,125 - 18,762,847 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trpv1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247866,231,494 - 6,249,001 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247866,231,494 - 6,249,001 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trpv1
32 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:869
Count of miRNA genes:460
Interacting mature miRNAs:535
Transcripts:ENSMUST00000006106, ENSMUST00000102526, ENSMUST00000108470, ENSMUST00000128113, ENSMUST00000138853
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117220979684731462Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse

Markers in Region
Trpv1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,260,677 - 73,260,797UniSTSGRCm38
MGSCv371173,074,179 - 73,074,299UniSTSGRCm37
Celera1180,797,943 - 80,798,063UniSTS
Cytogenetic Map11B3UniSTS
cM Map1145.25UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000006106   ⟹   ENSMUSP00000006106
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1173,129,085 - 73,151,333 (+)Ensembl
GRCm38.p6 Ensembl1173,238,259 - 73,260,507 (+)Ensembl
RefSeq Acc Id: ENSMUST00000102526   ⟹   ENSMUSP00000099585
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1173,125,118 - 73,152,065 (+)Ensembl
GRCm38.p6 Ensembl1173,234,292 - 73,261,239 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108470   ⟹   ENSMUSP00000104110
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1173,130,872 - 73,152,068 (+)Ensembl
GRCm38.p6 Ensembl1173,240,046 - 73,261,242 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128113
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1173,143,197 - 73,145,110 (+)Ensembl
GRCm38.p6 Ensembl1173,252,371 - 73,254,284 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138853   ⟹   ENSMUSP00000116400
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1173,131,136 - 73,145,710 (+)Ensembl
GRCm38.p6 Ensembl1173,240,310 - 73,254,884 (+)Ensembl
RefSeq Acc Id: NM_001001445   ⟹   NP_001001445
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391173,124,975 - 73,152,148 (+)NCBI
GRCm381173,234,149 - 73,261,322 (+)NCBI
MGSCv371173,051,761 - 73,074,009 (+)RGD
Celera1180,771,410 - 80,798,588 (+)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_001001445   ⟸   NM_001001445
- UniProtKB: Q5WPV5 (UniProtKB/Swiss-Prot),   Q5SSE4 (UniProtKB/Swiss-Prot),   Q5SSE2 (UniProtKB/Swiss-Prot),   Q5SSE1 (UniProtKB/Swiss-Prot),   Q68SW0 (UniProtKB/Swiss-Prot),   Q704Y3 (UniProtKB/Swiss-Prot),   Q3V318 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000116400   ⟸   ENSMUST00000138853
RefSeq Acc Id: ENSMUSP00000006106   ⟸   ENSMUST00000006106
RefSeq Acc Id: ENSMUSP00000104110   ⟸   ENSMUST00000108470
RefSeq Acc Id: ENSMUSP00000099585   ⟸   ENSMUST00000102526
Protein Domains
Ion transport

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q704Y3-F1-model_v2 AlphaFold Q704Y3 1-839 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1341787 AgrOrtholog
Ensembl Genes ENSMUSG00000005952 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000006106.14 UniProtKB/TrEMBL
  ENSMUST00000102526 ENTREZGENE
  ENSMUST00000102526.9 UniProtKB/Swiss-Prot
  ENSMUST00000108470.8 UniProtKB/TrEMBL
  ENSMUST00000138853.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPV UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPV1-4_channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:193034 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1341787 ENTREZGENE
NCBI Gene 193034 ENTREZGENE
PANTHER PTHR10582 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10582:SF17 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ank UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB TRPV1 RGD
PhenoGen Trpv1 PhenoGen
PRINTS TRPVRECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G3VLX9_MOUSE UniProtKB/TrEMBL
  Q3V318 ENTREZGENE, UniProtKB/TrEMBL
  Q5SSE1 ENTREZGENE
  Q5SSE2 ENTREZGENE
  Q5SSE4 ENTREZGENE
  Q5WPV5 ENTREZGENE
  Q68SW0 ENTREZGENE
  Q704Y3 ENTREZGENE, UniProtKB/Swiss-Prot
  Z4YJD4_MOUSE UniProtKB/TrEMBL
  Z4YKR8_MOUSE UniProtKB/TrEMBL
  Z4YLZ2_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q5SSE1 UniProtKB/Swiss-Prot
  Q5SSE2 UniProtKB/Swiss-Prot
  Q5SSE4 UniProtKB/Swiss-Prot
  Q5WPV5 UniProtKB/Swiss-Prot
  Q68SW0 UniProtKB/Swiss-Prot