Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal periodontium morphology
go back to main search page
Accession:MP:0030131 term browser browse the term
Definition:any structural anomaly of the specialized tissues that both surround and support the teeth, maintaining them in the maxillary and mandibular bones; it consists of four principal components: the gums (gingiva), periodontal ligament, cementum, and alveolar bone proper
Synonyms:exact_synonym: abnormal periodontal structures
 broad_synonym: periodontal abnormalities


show annotations for term's descendants           Sort by:
abnormal periodontium morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmp1 dentin matrix protein 1 IAGP MGI PMID:18573980 NCBI chr 5:104,345,441...104,361,968
Ensembl chr 5:104,350,479...104,361,968 		JBrowse link
G Dspp dentin sialophosphoprotein IAGP MGI PMID:22934831 NCBI chr 5:104,318,569...104,327,993
Ensembl chr 5:104,318,578...104,327,993 		JBrowse link
G Ibsp integrin binding sialoprotein IAGP MGI PMID:23183644 NCBI chr 5:104,447,153...104,459,338
Ensembl chr 5:104,447,037...104,459,335 		JBrowse link
G Tnn tenascin N IAGP MGI PMID:33552067 NCBI chr 1:159,912,599...159,981,242
Ensembl chr 1:159,912,599...159,981,150 		JBrowse link
abnormal acellular cementum morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alpl alkaline phosphatase, liver/bone/kidney IAGP MGI PMID:25716980 NCBI chr 4:137,469,042...137,523,695
Ensembl chr 4:137,469,044...137,523,695 		JBrowse link
G Dmp1 dentin matrix protein 1 IAGP MGI PMID:18573980 NCBI chr 5:104,345,441...104,361,968
Ensembl chr 5:104,350,479...104,361,968 		JBrowse link
G Ibsp integrin binding sialoprotein IAGP MGI PMID:23183644 PMID:25963390 NCBI chr 5:104,447,153...104,459,338
Ensembl chr 5:104,447,037...104,459,335 		JBrowse link
abnormal alveolar process morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alpl alkaline phosphatase, liver/bone/kidney IAGP MGI PMID:22991301 PMID:25716980 NCBI chr 4:137,469,042...137,523,695
Ensembl chr 4:137,469,044...137,523,695 		JBrowse link
G Ctsk cathepsin K IAGP MGI PMID:17210673 NCBI chr 3:95,406,521...95,416,698
Ensembl chr 3:95,406,567...95,416,673 		JBrowse link
G Dmp1 dentin matrix protein 1 IAGP MGI PMID:14966118 PMID:18573980 NCBI chr 5:104,345,441...104,361,968
Ensembl chr 5:104,350,479...104,361,968 		JBrowse link
G Dspp dentin sialophosphoprotein IAGP MGI PMID:22934831 NCBI chr 5:104,318,569...104,327,993
Ensembl chr 5:104,318,578...104,327,993 		JBrowse link
G Ednra endothelin receptor type A IAGP MGI PMID:18199583 NCBI chr 8:78,389,658...78,451,081
Ensembl chr 8:78,389,660...78,451,093 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:29727702 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Inhba inhibin beta-A IAGP MGI PMID:7885473 NCBI chr13:16,178,841...16,206,194
Ensembl chr13:16,186,436...16,206,206 		JBrowse link
G Postn periostin, osteoblast specific factor IAGP MGI PMID:23505553 NCBI chr 3:54,266,688...54,298,462
Ensembl chr 3:54,268,530...54,298,458 		JBrowse link
G Prmt1 protein arginine N-methyltransferase 1 IAGP MGI PMID:29727702 NCBI chr 7:44,626,179...44,635,844
Ensembl chr 7:44,625,413...44,635,992 		JBrowse link
G Rnf146 ring finger protein 146 IAGP MGI PMID:28581440 NCBI chr10:29,220,172...29,238,438
Ensembl chr10:29,220,172...29,238,438 		JBrowse link
G Slc39a13 solute carrier family 39 (metal ion transporter), member 13 IAGP MGI PMID:18985159 NCBI chr 2:90,892,136...90,900,754
Ensembl chr 2:90,892,136...90,900,762 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3, neutral IAGP MGI PMID:16025116 NCBI chr 8:106,979,180...107,064,597
Ensembl chr 8:106,979,180...107,064,620 		JBrowse link
G Stk11 serine/threonine kinase 11 IAGP MGI PMID:27527806 NCBI chr10:79,951,602...79,966,513
Ensembl chr10:79,951,637...79,966,516 		JBrowse link
G Tnn tenascin N IAGP MGI PMID:33552067 NCBI chr 1:159,912,599...159,981,242
Ensembl chr 1:159,912,599...159,981,150 		JBrowse link
G Wnt10a wingless-type MMTV integration site family, member 10A IAGP MGI PMID:28589954 NCBI chr 1:74,831,178...74,843,335
Ensembl chr 1:74,830,675...74,843,338 		JBrowse link
abnormal cellular cementum morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alpl alkaline phosphatase, liver/bone/kidney IAGP MGI PMID:25716980 NCBI chr 4:137,469,042...137,523,695
Ensembl chr 4:137,469,044...137,523,695 		JBrowse link
G Dmp1 dentin matrix protein 1 IAGP MGI PMID:18573980 NCBI chr 5:104,345,441...104,361,968
Ensembl chr 5:104,350,479...104,361,968 		JBrowse link
abnormal cementoblast morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmp1 dentin matrix protein 1 IAGP MGI PMID:18573980 NCBI chr 5:104,345,441...104,361,968
Ensembl chr 5:104,350,479...104,361,968 		JBrowse link
abnormal cementocyte canaliculus morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmp1 dentin matrix protein 1 IAGP MGI PMID:18573980 NCBI chr 5:104,345,441...104,361,968
Ensembl chr 5:104,350,479...104,361,968 		JBrowse link
abnormal cementocyte dendritic process morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmp1 dentin matrix protein 1 IAGP MGI PMID:18573980 NCBI chr 5:104,345,441...104,361,968
Ensembl chr 5:104,350,479...104,361,968 		JBrowse link
abnormal cementocyte lacuna morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmp1 dentin matrix protein 1 IAGP MGI PMID:18573980 NCBI chr 5:104,345,441...104,361,968
Ensembl chr 5:104,350,479...104,361,968 		JBrowse link
abnormal cementocyte lacunocanalicular system morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmp1 dentin matrix protein 1 IAGP MGI PMID:18573980 NCBI chr 5:104,345,441...104,361,968
Ensembl chr 5:104,350,479...104,361,968 		JBrowse link
abnormal cementum mineralization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alpl alkaline phosphatase, liver/bone/kidney IAGP MGI PMID:25716980 NCBI chr 4:137,469,042...137,523,695
Ensembl chr 4:137,469,044...137,523,695 		JBrowse link
G Dmp1 dentin matrix protein 1 IAGP MGI PMID:18573980 NCBI chr 5:104,345,441...104,361,968
Ensembl chr 5:104,350,479...104,361,968 		JBrowse link
G Ibsp integrin binding sialoprotein IAGP MGI PMID:23183644 NCBI chr 5:104,447,153...104,459,338
Ensembl chr 5:104,447,037...104,459,335 		JBrowse link
abnormal cementum morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alpl alkaline phosphatase, liver/bone/kidney IAGP MGI PMID:22991301 NCBI chr 4:137,469,042...137,523,695
Ensembl chr 4:137,469,044...137,523,695 		JBrowse link
G Ank progressive ankylosis IAGP MGI PMID:16869722 NCBI chr15:27,466,763...27,594,995
Ensembl chr15:27,466,763...27,594,995 		JBrowse link
G Dspp dentin sialophosphoprotein IAGP MGI PMID:22934831 NCBI chr 5:104,318,569...104,327,993
Ensembl chr 5:104,318,578...104,327,993 		JBrowse link
G Fam20c FAM20C, golgi associated secretory pathway kinase IAGP MGI PMID:25479552 NCBI chr 5:138,740,836...138,795,818
Ensembl chr 5:138,740,269...138,795,832 		JBrowse link
G Notum notum palmitoleoyl-protein carboxylesterase IAGP MGI PMID:26926082 NCBI chr11:120,544,614...120,552,019
Ensembl chr11:120,544,614...120,552,001 		JBrowse link
abnormal junctional epithelium morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1a cyclin dependent kinase inhibitor 1A IAGP MGI PMID:15154924 NCBI chr17:29,309,953...29,319,696
Ensembl chr17:29,309,950...29,319,701 		JBrowse link
G Cdkn1b cyclin dependent kinase inhibitor 1B IAGP MGI PMID:15154924 NCBI chr 6:134,897,364...134,902,488
Ensembl chr 6:134,897,364...134,902,476 		JBrowse link
G Dspp dentin sialophosphoprotein IAGP MGI PMID:22934831 NCBI chr 5:104,318,569...104,327,993
Ensembl chr 5:104,318,578...104,327,993 		JBrowse link
G Ibsp integrin binding sialoprotein IAGP MGI PMID:23183644 NCBI chr 5:104,447,153...104,459,338
Ensembl chr 5:104,447,037...104,459,335 		JBrowse link
abnormal molar socket morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nfic nuclear factor I/C IAGP MGI PMID:12529411 NCBI chr10:81,232,025...81,267,753
Ensembl chr10:81,232,020...81,291,469 		JBrowse link
abnormal periodontal ligament morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ano5 anoctamin 5 IAGP MGI PMID:30712070 NCBI chr 7:51,160,668...51,248,459
Ensembl chr 7:51,160,777...51,248,457 		JBrowse link
G Antxr1 anthrax toxin receptor 1 IAGP MGI PMID:19622764 NCBI chr 6:87,110,835...87,312,757
Ensembl chr 6:87,110,835...87,312,803 		JBrowse link
G Dcn decorin IAGP MGI PMID:11140699 NCBI chr10:97,315,362...97,354,025
Ensembl chr10:97,315,471...97,354,005 		JBrowse link
G Dmp1 dentin matrix protein 1 IAGP MGI PMID:18573980 NCBI chr 5:104,345,441...104,361,968
Ensembl chr 5:104,350,479...104,361,968 		JBrowse link
G Dspp dentin sialophosphoprotein IAGP MGI PMID:22934831 NCBI chr 5:104,318,569...104,327,993
Ensembl chr 5:104,318,578...104,327,993 		JBrowse link
G Fam20c FAM20C, golgi associated secretory pathway kinase IAGP MGI PMID:25479552 NCBI chr 5:138,740,836...138,795,818
Ensembl chr 5:138,740,269...138,795,832 		JBrowse link
G Ibsp integrin binding sialoprotein IAGP MGI PMID:23183644 PMID:25963390 NCBI chr 5:104,447,153...104,459,338
Ensembl chr 5:104,447,037...104,459,335 		JBrowse link
G Itga11 integrin alpha 11 IAGP MGI PMID:17420280 NCBI chr 9:62,585,137...62,691,618
Ensembl chr 9:62,585,108...62,691,264 		JBrowse link
G Nfe2l2 nuclear factor, erythroid derived 2, like 2 IAGP MGI PMID:27070823 NCBI chr 2:75,505,860...75,535,007
Ensembl chr 2:75,505,857...75,534,985 		JBrowse link
G Notum notum palmitoleoyl-protein carboxylesterase IAGP MGI PMID:26926082 NCBI chr11:120,544,614...120,552,019
Ensembl chr11:120,544,614...120,552,001 		JBrowse link
G Postn periostin, osteoblast specific factor IAGP MGI PMID:16314533 PMID:16497272 PMID:23505553 NCBI chr 3:54,266,688...54,298,462
Ensembl chr 3:54,268,530...54,298,458 		JBrowse link
G Tnn tenascin N IAGP MGI PMID:33552067 NCBI chr 1:159,912,599...159,981,242
Ensembl chr 1:159,912,599...159,981,150 		JBrowse link
absent alveolar process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx5 distal-less homeobox 5 IAGP MGI PMID:16330189 NCBI chr 6:6,877,801...6,882,068
Ensembl chr 6:6,877,805...6,882,085 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:17610273 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 IAGP MGI PMID:7958926 NCBI chr 3:130,903,972...131,018,006
Ensembl chr 3:130,904,120...131,018,005 		JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:7914451 PMID:9256350 PMID:16330189 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927 		JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:9732271 PMID:17610273 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607 		JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:11044393 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
alveolar process atrophy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmp1 dentin matrix protein 1 IAGP MGI PMID:18573980 NCBI chr 5:104,345,441...104,361,968
Ensembl chr 5:104,350,479...104,361,968 		JBrowse link
G Dspp dentin sialophosphoprotein IAGP MGI PMID:12721295 PMID:22934831 NCBI chr 5:104,318,569...104,327,993
Ensembl chr 5:104,318,578...104,327,993 		JBrowse link
G Fam20c FAM20C, golgi associated secretory pathway kinase IAGP MGI PMID:25479552 NCBI chr 5:138,740,836...138,795,818
Ensembl chr 5:138,740,269...138,795,832 		JBrowse link
G Ibsp integrin binding sialoprotein IAGP MGI PMID:23183644 PMID:25963390 NCBI chr 5:104,447,153...104,459,338
Ensembl chr 5:104,447,037...104,459,335 		JBrowse link
G Ifng interferon gamma IAGP MGI PMID:17305866 NCBI chr10:118,276,951...118,281,799
Ensembl chr10:118,276,951...118,281,797 		JBrowse link
G Il10 interleukin 10 IAGP MGI PMID:17305866 NCBI chr 1:130,947,459...130,952,707
Ensembl chr 1:130,947,582...130,952,711 		JBrowse link
G Il12b interleukin 12b IAGP MGI PMID:17305866 NCBI chr11:44,290,890...44,305,504
Ensembl chr11:44,290,890...44,304,860 		JBrowse link
G Il4 interleukin 4 IAGP MGI PMID:17305866 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496 		JBrowse link
G Nfe2l2 nuclear factor, erythroid derived 2, like 2 IAGP MGI PMID:27070823 NCBI chr 2:75,505,860...75,535,007
Ensembl chr 2:75,505,857...75,534,985 		JBrowse link
G Pfas phosphoribosylformylglycinamidine synthase (FGAR amidotransferase) IAGP MGI PMID:26234751 NCBI chr11:68,876,527...68,899,286
Ensembl chr11:68,876,523...68,899,286 		JBrowse link
G Sh3bp2 SH3-domain binding protein 2 IAGP MGI PMID:17218256 NCBI chr 5:34,683,128...34,720,983
Ensembl chr 5:34,683,182...34,720,985 		JBrowse link
G Tnf tumor necrosis factor IAGP MGI PMID:17305866 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983 		JBrowse link
decreased cementoblast number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmp1 dentin matrix protein 1 IAGP MGI PMID:18573980 NCBI chr 5:104,345,441...104,361,968
Ensembl chr 5:104,350,479...104,361,968 		JBrowse link
detached junctional epithelium term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein IAGP MGI PMID:22934831 NCBI chr 5:104,318,569...104,327,993
Ensembl chr 5:104,318,578...104,327,993 		JBrowse link
G Fam20c FAM20C, golgi associated secretory pathway kinase IAGP MGI PMID:25479552 NCBI chr 5:138,740,836...138,795,818
Ensembl chr 5:138,740,269...138,795,832 		JBrowse link
increased number of epithelial cell rests of Malassez term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Itga11 integrin alpha 11 IAGP MGI PMID:17420280 NCBI chr 9:62,585,137...62,691,618
Ensembl chr 9:62,585,108...62,691,264 		JBrowse link
periodontal ligament hypercellularity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcn decorin IAGP MGI PMID:11140699 NCBI chr10:97,315,362...97,354,025
Ensembl chr10:97,315,471...97,354,005 		JBrowse link
periodontal ligament necrosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsl cathepsin L IAGP MGI PMID:12163394 NCBI chr13:64,509,704...64,518,586
Ensembl chr13:64,507,151...64,518,704 		JBrowse link
G Fam20c FAM20C, golgi associated secretory pathway kinase IAGP MGI PMID:25479552 NCBI chr 5:138,740,836...138,795,818
Ensembl chr 5:138,740,269...138,795,832 		JBrowse link
periodontal pocket term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein IAGP MGI PMID:22934831 NCBI chr 5:104,318,569...104,327,993
Ensembl chr 5:104,318,578...104,327,993 		JBrowse link
G Fam20c FAM20C, golgi associated secretory pathway kinase IAGP MGI PMID:25479552 NCBI chr 5:138,740,836...138,795,818
Ensembl chr 5:138,740,269...138,795,832 		JBrowse link
G Fam83h family with sequence similarity 83, member H IAGP MGI PMID:26788537 NCBI chr15:75,872,941...75,886,185
Ensembl chr15:75,872,942...75,886,185 		JBrowse link
tooth ankylosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pthlh parathyroid hormone-like peptide IAGP MGI PMID:9751753 NCBI chr 6:147,153,607...147,165,511
Ensembl chr 6:147,153,599...147,165,681 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16756
    growth/size/body region phenotype 6948
      abnormal head morphology 1331
        abnormal facial morphology 1086
          abnormal mouth morphology 802
            abnormal periodontium morphology 42
              abnormal alveolar process morphology + 31
              abnormal cementum morphology + 8
              abnormal gum morphology + 5
              abnormal periodontal ligament morphology + 13
              periodontal pocket 3
paths to the root