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ONTOLOGY REPORT - ANNOTATIONS

Term:cartilage development
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Accession:GO:0051216 term browser browse the term
Definition:The process whose specific outcome is the progression of a cartilage element over time, from its formation to the mature structure. Cartilage elements are skeletal elements that consist of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate.
Synonyms:exact_synonym: cartilage biogenesis;   cartilage biosynthesis;   cartilage element development;   cartilage formation;   cartilage organ development;   chondrogenesis
 xref: Wikipedia:Chondrogenesis


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cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP7A ATPase copper transporting alpha acts_upstream_of_or_within ISO (PMID:8895222) MGI PMID:8895222 NCBI chr  X:61,972,544...62,110,058
Ensembl chr  X:61,972,991...62,110,048 		JBrowse link
G BBS1 Bardet-Biedl syndrome 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19195025) Ensembl
MGI		 PMID:19195025 GO_REF:0000107 NCBI chr 2:5,886,989...5,906,468
Ensembl chr 2:5,886,990...5,906,388 		JBrowse link
G BBS2 Bardet-Biedl syndrome 2 acts_upstream_of_or_within ISO (PMID:19195025) MGI PMID:19195025 NCBI chr 6:18,542,383...18,575,338
Ensembl chr 6:18,542,386...18,575,514 		JBrowse link
G BMP2 bone morphogenetic protein 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr17:15,750,487...15,762,982
Ensembl chr17:15,749,835...15,761,195 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,146...183,422,637 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15492776) Ensembl
MGI		 PMID:15492776 GO_REF:0000107 NCBI chr14:87,743,270...87,891,790
Ensembl chr14:87,742,459...87,891,790 		JBrowse link
G CD44 CD44 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:25,788,699...25,884,209
Ensembl chr 2:25,788,703...25,884,153 		JBrowse link
G CFH complement factor H acts_upstream_of_or_within ISO (PMID:19828624) MGI PMID:19828624
G CHST11 carbohydrate sulfotransferase 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16079159) Ensembl
MGI		 PMID:16079159 GO_REF:0000107 NCBI chr 5:79,788,558...80,068,903
Ensembl chr 5:79,788,572...80,067,795 		JBrowse link
G CHSY1 chondroitin sulfate synthase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22280990) Ensembl
MGI		 PMID:22280990 GO_REF:0000107 NCBI chr 1:139,730,703...139,804,458
Ensembl chr 1:139,730,721...139,804,657 		JBrowse link
G CNMD chondromodulin involved_in IEA UniProt GO_REF:0000043 NCBI chr11:25,959,192...25,994,773
Ensembl chr11:25,961,926...25,994,651 		JBrowse link
G COL10A1 collagen type X alpha 1 chain ISO RGD PMID:10853827 RGD:704421 NCBI chr 1:81,766,829...81,773,818
Ensembl chr 1:81,765,859...81,773,818 		JBrowse link
G COL11A1 collagen type XI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:4100752), (PMID:4110409), (PMID:7859283), (PMID:886247) Ensembl
MGI		 PMID:886247 PMID:4100752 PMID:4110409 PMID:7859283 GO_REF:0000107 MGI:60257 NCBI chr 4:115,638,381...115,841,679
Ensembl chr 4:115,634,172...115,840,708 		JBrowse link
G COL11A2 collagen type XI alpha 2 chain involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:25,204,496...25,234,880
Ensembl chr 7:25,204,497...25,234,888 		JBrowse link
G COL2A1 collagen type II alpha 1 chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:7276808), (PMID:9165353)
(PMID:11171689), (PMID:11680679), (PMID:7590256), (PMID:9832566)
(PMID:10100048), (PMID:9061443)		 RGD
MGI
Ensembl		 PMID:7276808 PMID:7590256 PMID:9061443 PMID:9165353 PMID:9822201 More... GO_REF:0000107 RGD:70694 NCBI chr 5:78,350,131...78,380,893
Ensembl chr 5:78,350,137...78,380,718 		JBrowse link
G COL3A1 collagen type III alpha 1 chain involved_in ISO (PMID:31655293) MGI PMID:31655293 NCBI chr15:93,556,914...93,595,678
Ensembl chr15:93,526,603...93,596,363 		JBrowse link
G COL9A1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO (PMID:18191556)
(PMID:11680679)		 MGI PMID:11680679 PMID:18191556 NCBI chr 1:50,403,355...50,498,356
Ensembl chr 1:50,403,361...50,498,332 		JBrowse link
G COMP cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18191556)
(PMID:23951406)
(PMID:17588960)		 Ensembl
MGI		 PMID:17588960 PMID:18191556 PMID:23951406 GO_REF:0000107 NCBI chr 2:59,061,409...59,068,951
Ensembl chr 2:59,061,426...59,069,564 		JBrowse link
G CREB3L2 cAMP responsive element binding protein 3 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:11,533,184...11,666,132
Ensembl chr18:11,533,183...11,666,113 		JBrowse link
G CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 acts_upstream_of_or_within ISO (PMID:20812917) MGI PMID:20812917 NCBI chr17:12,145,141...12,498,777
Ensembl chr17:12,428,893...12,498,585 		JBrowse link
G DDRGK1 DDRGK domain containing 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr17:32,479,981...32,491,401
Ensembl chr17:32,479,977...32,491,396 		JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:21098571) MGI PMID:21098571 NCBI chr 7:116,361,630...116,436,471
Ensembl chr 7:116,365,802...116,411,224 		JBrowse link
G DLX2 distal-less homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7590232) Ensembl
MGI		 PMID:7590232 GO_REF:0000107 NCBI chr15:78,200,696...78,204,264
Ensembl chr15:78,200,916...78,204,112 		JBrowse link
G DSPP dentin sialophosphoprotein ISO femoral head RGD PMID:20679519 RGD:12914771 NCBI chr 8:131,318,187...131,444,274
Ensembl chr 8:131,319,983...131,472,761 		JBrowse link
G EDN1 endothelin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8152482) Ensembl
MGI		 PMID:8152482 GO_REF:0000107 NCBI chr 7:8,752,018...8,758,354
Ensembl chr 7:8,751,695...8,758,348 		JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:15625282), (PMID:25260930)
(PMID:24770645)		 MGI PMID:15625282 PMID:24770645 PMID:25260930 NCBI chr 1:31,724,290...31,796,594
Ensembl chr 1:31,722,721...31,796,595 		JBrowse link
G ERRFI1 ERBB receptor feedback inhibitor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24550287) Ensembl
MGI		 PMID:24550287 GO_REF:0000107 NCBI chr 6:68,667,651...68,682,629
Ensembl chr 6:68,669,153...68,682,623 		JBrowse link
G ESRRA estrogen related receptor alpha ISO RGD PMID:17170100 RGD:1625657 NCBI chr 2:7,803,504...7,812,868
Ensembl chr 2:7,803,510...7,813,098 		JBrowse link
G EVC EvC ciliary complex subunit 1 ISO RGD PMID:15278943 RGD:1598913 NCBI chr 8:4,808,622...4,891,236
Ensembl chr 8:4,810,093...4,891,165 		JBrowse link
G FBXW4 F-box and WD repeat domain containing 4 acts_upstream_of_or_within ISO (PMID:9733575) MGI PMID:9733575 NCBI chr14:112,628,988...112,736,631
Ensembl chr14:112,638,204...112,736,056 		JBrowse link
G FGFR3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:15781473) MGI PMID:15781473 NCBI chr 8:879,151...894,968
Ensembl chr 8:879,159...894,964 		JBrowse link
G FOSL2 FOS like 2, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15509771) Ensembl
MGI		 PMID:15509771 GO_REF:0000107 NCBI chr 3:110,820,403...110,842,903
Ensembl chr 3:110,823,666...110,843,068 		JBrowse link
G GATA3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:63,367,684...63,397,977
Ensembl chr10:63,367,663...63,388,859 		JBrowse link
G GNAS GNAS complex locus involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15797856) Ensembl
MGI		 PMID:15797856 GO_REF:0000107 NCBI chr17:58,985,580...59,053,022
Ensembl chr17:58,998,981...59,053,021 		JBrowse link
G HES5 hes family bHLH transcription factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:64,409,110...64,410,541
Ensembl chr 6:64,408,956...64,410,881 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11691837) Ensembl
MGI		 PMID:11691837 GO_REF:0000107 NCBI chr 1:190,625,436...190,673,926
Ensembl chr 1:190,625,244...190,674,845 		JBrowse link
G HOXA3 homeobox A3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441667) Ensembl
MGI		 PMID:9441667 GO_REF:0000107 NCBI chr18:45,421,542...45,467,803
Ensembl chr18:45,454,213...45,466,537 		JBrowse link
G HOXB3 homeobox B3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441667) Ensembl
MGI		 PMID:9441667 GO_REF:0000107 NCBI chr12:24,803,119...24,827,557
Ensembl chr12:24,804,647...24,809,937 		JBrowse link
G HOXC4 homeobox C4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8626021) Ensembl
MGI		 PMID:8626021 GO_REF:0000107 NCBI chr 5:19,250,411...19,268,267
Ensembl chr 5:19,265,081...19,268,257 		JBrowse link
G HOXD3 homeobox D3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441667) Ensembl
MGI		 PMID:9441667 GO_REF:0000107 NCBI chr15:81,969,482...81,974,893
Ensembl chr15:81,958,701...81,973,673 		JBrowse link
G HYAL1 hyaluronidase 1 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr13:32,798,135...32,800,705
Ensembl chr13:32,797,681...32,800,793 		JBrowse link
G HYAL2 hyaluronidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:32,805,220...32,813,684
Ensembl chr13:32,805,227...32,815,333 		JBrowse link
G HYAL3 hyaluronidase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:32,790,843...32,796,995
Ensembl chr13:32,790,850...32,796,563 		JBrowse link
G IFT80 intraflagellar transport 80 acts_upstream_of_or_within ISO (PMID:32227389) MGI PMID:32227389 NCBI chr13:99,943,203...100,078,148
Ensembl chr13:99,943,208...100,078,148 		JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17191253) Ensembl
MGI		 PMID:17191253 GO_REF:0000107 NCBI chr15:121,083,750...121,090,548
Ensembl chr15:121,083,753...121,090,121 		JBrowse link
G IL17F interleukin 17F involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:46,058,371...46,066,039
Ensembl chr 7:46,059,002...46,077,048 		JBrowse link
G ITGB8 integrin subunit beta 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:89,342,245...89,450,701
Ensembl chr 9:89,341,162...89,448,665 		JBrowse link
G LOC100623720 collagen alpha-1(VI) chain acts_upstream_of_or_within ISO (PMID:19248115), (PMID:22448243) MGI PMID:19248115 PMID:22448243 NCBI chr13:208,295,245...208,321,789
Ensembl chr13:208,295,451...208,313,127 		JBrowse link
G LUM lumican ISO RGD PMID:19746167 RGD:2317685 NCBI chr 5:91,748,871...91,756,381
Ensembl chr 5:91,748,885...91,757,598 		JBrowse link
G MAPK3 mitogen-activated protein kinase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17644814) Ensembl
MGI		 PMID:17644814 GO_REF:0000107 NCBI chr 3:18,291,444...18,299,410
Ensembl chr 3:18,291,445...18,299,567 		JBrowse link
G MATN3 matrilin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23951406) Ensembl
MGI		 PMID:23951406 GO_REF:0000107 NCBI chr 3:118,185,928...118,206,465
Ensembl chr 3:118,185,975...118,205,558 		JBrowse link
G MGP matrix Gla protein involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:57,665,272...57,669,360
Ensembl chr 5:57,665,248...57,669,764 		JBrowse link
G MIR140 microRNA mir-140 acts_upstream_of_or_within ISO (PMID:20466812) MGI PMID:20466812 NCBI chr 6:17,077,530...17,077,599
Ensembl chr 6:17,077,507...17,077,620 		JBrowse link
G MKKS MKKS centrosomal shuttling protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19195025) Ensembl
MGI		 PMID:19195025 GO_REF:0000107 NCBI chr17:19,341,024...19,363,007
Ensembl chr17:19,341,636...19,362,871 		JBrowse link
G MSX1 msh homeobox 1 ISO RGD PMID:10332146 RGD:1600462 NCBI chr 8:5,628,381...5,632,375
Ensembl chr 8:5,628,380...5,632,607 		JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:11668602)
(PMID:10742104)		 RGD
MGI		 PMID:10332146 PMID:10742104 PMID:11668602 RGD:1600462 NCBI chr16:49,765,587...49,771,745
Ensembl chr16:49,765,910...49,771,789 		JBrowse link
G NFATC2 nuclear factor of activated T cells 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:52,743,570...52,907,373
Ensembl chr17:52,743,568...52,906,821 		JBrowse link
G NFIA nuclear factor I A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:150,834,002...151,229,773
Ensembl chr 6:150,835,494...151,426,749 		JBrowse link
G NOG noggin involved_in
acts_upstream_of		 IEA
ISO		 (PMID:10684250) UniProt
MGI
Ensembl		 PMID:10684250 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 NCBI chr12:32,891,321...32,892,206
Ensembl chr12:32,891,321...32,892,206 		JBrowse link
G NPR2 natriuretic peptide receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:236,508,994...236,529,172
Ensembl chr 1:236,508,998...236,529,128 		JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within ISO (PMID:8631261) MGI PMID:8631261 NCBI chr 6:77,160,827...77,268,626
Ensembl chr 6:77,161,097...77,267,415 		JBrowse link
G PITX1 paired like homeodomain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10101115) Ensembl
MGI		 PMID:10101115 GO_REF:0000107 NCBI chr 2:137,200,424...137,212,500
Ensembl chr 2:137,200,423...137,206,979 		JBrowse link
G PKD1 polycystin 1, transient receptor potential channel interacting involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:39,849,579...39,899,455
Ensembl chr 3:39,849,609...39,899,455 		JBrowse link
G PRRX1 paired related homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9876178)
(PMID:7758948)		 Ensembl
MGI		 PMID:7758948 PMID:9876178 GO_REF:0000107 NCBI chr 4:80,427,682...80,502,689
Ensembl chr 4:80,427,687...80,501,646 		JBrowse link
G PRRX2 paired related homeobox 2 acts_upstream_of_or_within ISO (PMID:9876178) MGI PMID:9876178 NCBI chr 1:269,853,134...269,902,808
Ensembl chr 1:269,853,200...269,903,469 		JBrowse link
G SATB2 SATB homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16751105) Ensembl
MGI		 PMID:16751105 GO_REF:0000107 NCBI chr15:102,962,635...103,172,224
Ensembl chr15:102,964,417...103,158,232 		JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18729207) Ensembl
MGI		 PMID:18729207 GO_REF:0000107 NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,144...75,345,921 		JBrowse link
G SMAD1 SMAD family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19224984) Ensembl
MGI		 PMID:19224984 GO_REF:0000107 NCBI chr 8:82,907,557...82,987,909
Ensembl chr 8:82,908,527...82,968,994 		JBrowse link
G SMAD5 SMAD family member 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19224984) Ensembl
MGI		 PMID:19224984 GO_REF:0000107 NCBI chr 2:138,287,635...138,344,092
Ensembl chr 2:138,287,710...138,344,762 		JBrowse link
G SMAD9 SMAD family member 9 acts_upstream_of_or_within ISO (PMID:19224984) MGI PMID:19224984 NCBI chr11:12,705,652...12,727,981
Ensembl chr11:12,705,368...12,763,008 		JBrowse link
G SMPD3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27325675)
(PMID:17591962)		 Ensembl
MGI		 PMID:17591962 PMID:27325675 GO_REF:0000107 NCBI chr 6:28,938,287...29,025,397
Ensembl chr 6:28,938,290...29,025,357 		JBrowse link
G SNORC secondary ossification center associated regulator of chondrocyte maturation involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr15:133,323,562...133,330,253
Ensembl chr15:133,323,562...133,330,253 		JBrowse link
G SOX5 SRY-box transcription factor 5 involved_in
acts_upstream_of_or_within		 ISO (MGI:6414706|PMID:15529345)
(PMID:15634692)
(MGI:5780653|PMID:26150426)		 UniProt
MGI		 PMID:15529345 PMID:15634692 PMID:26150426 MGI:5780653 MGI:6414706 NCBI chr 5:49,159,950...50,166,463
Ensembl chr 5:49,504,551...50,161,558 		JBrowse link
G SOX6 SRY-box transcription factor 6 involved_in
acts_upstream_of_or_within		 ISO (MGI:5780653|PMID:26150426)
(PMID:15634692)
(MGI:6414706|PMID:15529345)		 UniProt
MGI		 PMID:15529345 PMID:15634692 PMID:26150426 MGI:5780653 MGI:6414706 NCBI chr 2:42,447,391...43,068,824
Ensembl chr 2:42,453,681...43,068,325 		JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of
acts_upstream_of_or_within
involved_in		 ISO
IEA
ISS		 (PMID:19047045)
(PMID:11371614)		 RGD
MGI
Ensembl
UniProt		 PMID:11371614 PMID:15512770 PMID:19047045 GO_REF:0000024 GO_REF:0000107 RGD:1599098 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315 		JBrowse link
G SULF1 sulfatase 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr 4:65,595,947...65,778,889
Ensembl chr 4:65,595,951...65,778,884 		JBrowse link
G SULF2 sulfatase 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr17:49,663,721...49,805,118
Ensembl chr17:49,663,731...49,804,577 		JBrowse link
G TAPT1 transmembrane anterior posterior transformation 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:11,365,423...11,415,699
Ensembl chr 8:11,365,432...11,416,488 		JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:16,784,370...16,875,828
Ensembl chr13:16,784,490...16,878,160 		JBrowse link
G TIMP1 TIMP metallopeptidase inhibitor 1 ISO RGD PMID:16208432 RGD:8694091 NCBI chr  X:42,103,251...42,106,289
Ensembl chr  X:42,102,172...42,106,296 		JBrowse link
G TRIP11 thyroid hormone receptor interactor 11 involved_in ISO (PMID:30728324) UniProt PMID:30728324 NCBI chr 7:113,524,406...113,600,411
Ensembl chr 7:113,524,430...113,600,088 		JBrowse link
G TYMS thymidylate synthetase ISO RGD PMID:3471366 RGD:2317423 NCBI chr 6:105,642,730...105,660,279
Ensembl chr 6:105,642,381...105,660,578 		JBrowse link
G WNT7A Wnt family member 7A involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:70,538,802...70,602,464
Ensembl chr13:70,538,894...70,602,454 		JBrowse link
G WNT9A Wnt family member 9A acts_upstream_of ISO (PMID:19047045) MGI PMID:19047045 NCBI chr 2:51,102,757...51,128,346
Ensembl chr 2:51,102,763...51,128,346 		JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:41,639,536...41,839,254
Ensembl chr 9:41,639,701...41,836,742 		JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9389660) Ensembl
MGI		 PMID:9389660 GO_REF:0000107 NCBI chr10:42,013,114...42,216,139
Ensembl chr10:42,013,084...42,214,205 		JBrowse link
articular cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BGN biglycan involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19932218) Ensembl
MGI		 PMID:19932218 GO_REF:0000107 NCBI chr  X:124,282,048...124,295,450
Ensembl chr  X:124,275,305...124,295,445 		JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:22359666), (PMID:22927960)
(PMID:28402956)		 MGI PMID:22359666 PMID:22927960 PMID:28402956 NCBI chr 1:31,724,290...31,796,594
Ensembl chr 1:31,722,721...31,796,595 		JBrowse link
G EPYC epiphycan involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 (PMID:19932218) Ensembl
GO_Central
TreeGrafter
MGI		 PMID:19932218 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:91,837,672...91,877,779
Ensembl chr 5:91,832,291...91,877,982 		JBrowse link
G IFT80 intraflagellar transport 80 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26098911) Ensembl
MGI		 PMID:26098911 GO_REF:0000107 NCBI chr13:99,943,203...100,078,148
Ensembl chr13:99,943,208...100,078,148 		JBrowse link
G OGN osteoglycin involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 3:42,116,521...42,135,940
Ensembl chr 3:42,116,526...42,135,939 		JBrowse link
G OPTC opticin involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 9:64,211,477...64,220,982
Ensembl chr 9:64,211,477...64,220,981 		JBrowse link
G PBXIP1 PBX homeobox interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:94,837,365...94,847,652
Ensembl chr 4:94,832,270...94,847,648 		JBrowse link
bronchus cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24218621) Ensembl
MGI		 PMID:24218621 GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315 		JBrowse link
G SRF serum response factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24218621) Ensembl
MGI		 PMID:24218621 GO_REF:0000107 NCBI chr 7:38,213,300...38,223,686
Ensembl chr 7:38,213,487...38,222,144 		JBrowse link
cartilage condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:3070812) Ensembl
MGI		 PMID:3070812 GO_REF:0000107 NCBI chr 7:54,449,830...54,520,606
Ensembl chr 7:54,449,816...54,519,194 		JBrowse link
G BARX2 BARX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15800003) Ensembl
MGI		 PMID:15800003 GO_REF:0000107 NCBI chr 9:56,261,394...56,340,992
Ensembl chr 9:56,261,658...56,340,983 		JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10631181) Ensembl
MGI		 PMID:10631181 GO_REF:0000107 NCBI chr 8:124,536,648...125,035,841
Ensembl chr 8:124,536,653...124,759,406 		JBrowse link
G CCN2 cellular communication network factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15305294) Ensembl
MGI		 PMID:15305294 GO_REF:0000107 NCBI chr 1:31,674,398...31,677,697
Ensembl chr 1:31,674,394...31,677,691 		JBrowse link
G CHAD chondroadherin ISO RGD PMID:9461555 RGD:69806 NCBI chr12:26,741,737...26,746,364
Ensembl chr12:26,742,494...26,746,214 		JBrowse link
G COL11A1 collagen type XI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:3070812) Ensembl
MGI		 PMID:3070812 GO_REF:0000107 NCBI chr 4:115,638,381...115,841,679
Ensembl chr 4:115,634,172...115,840,708 		JBrowse link
G COL2A1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:3070812) Ensembl
MGI		 PMID:3070812 GO_REF:0000107 NCBI chr 5:78,350,131...78,380,893
Ensembl chr 5:78,350,137...78,380,718 		JBrowse link
G FGF4 fibroblast growth factor 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8565825) Ensembl
MGI		 PMID:8565825 GO_REF:0000107 NCBI chr 2:3,527,113...3,529,011
Ensembl chr 2:3,526,914...3,529,874 		JBrowse link
G FGF6 fibroblast growth factor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8565825) Ensembl
MGI		 PMID:8565825 GO_REF:0000107 NCBI chr 5:65,975,807...65,990,035
Ensembl chr 5:65,975,838...65,990,029 		JBrowse link
G LOC110258854 otoraplin involved_in IEA TreeGrafter GO_REF:0000118
G MAPK14 mitogen-activated protein kinase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:31,791,398...31,861,544
Ensembl chr 7:31,790,877...31,862,031 		JBrowse link
G MYCN MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:17360777) MGI PMID:17360777 NCBI chr 3:121,543,201...121,549,678
Ensembl chr 3:121,543,109...121,549,046 		JBrowse link
G MYF5 myogenic factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8565825) Ensembl
MGI		 PMID:8565825 GO_REF:0000107 NCBI chr 5:100,753,440...100,755,558
Ensembl chr 5:100,752,890...100,755,494 		JBrowse link
G OTOR otoraplin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10998416) TreeGrafter
MGI		 PMID:10998416 GO_REF:0000118 NCBI chr17:25,380,179...25,383,521 JBrowse link
G PKD1 polycystin 1, transient receptor potential channel interacting involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11593033) Ensembl
MGI		 PMID:11593033 GO_REF:0000107 NCBI chr 3:39,849,579...39,899,455
Ensembl chr 3:39,849,609...39,899,455 		JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:14745966) MGI PMID:14745966 NCBI chr14:2,803,840...3,035,384
Ensembl chr14:2,804,061...3,035,296 		JBrowse link
G SOX5 SRY-box transcription factor 5 involved_in ISO (MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235) UniProt PMID:11702786 PMID:14993235 MGI:2446758 MGI:3037234 NCBI chr 5:49,159,950...50,166,463
Ensembl chr 5:49,504,551...50,161,558 		JBrowse link
G SOX6 SRY-box transcription factor 6 involved_in ISO (MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235) UniProt PMID:11702786 PMID:14993235 MGI:2446758 MGI:3037234 NCBI chr 2:42,447,391...43,068,824
Ensembl chr 2:42,453,681...43,068,325 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 (PMID:10319868)
(PMID:12414734)		 UniProt
MGI
Ensembl		 PMID:10319868 PMID:12414734 GO_REF:0000024 GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315 		JBrowse link
G TGFB2 transforming growth factor beta 2 acts_upstream_of_or_within ISO (PMID:8565825) MGI PMID:8565825 NCBI chr10:8,306,136...8,435,307
Ensembl chr10:8,305,539...8,390,341 		JBrowse link
G THRA thyroid hormone receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9250685) Ensembl
MGI		 PMID:9250685 GO_REF:0000107 NCBI chr12:22,270,506...22,296,684
Ensembl chr12:22,270,062...22,296,618 		JBrowse link
G UNCX UNC homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10804168)
(PMID:10804169)		 Ensembl
MGI		 PMID:10804168 PMID:10804169 GO_REF:0000107 NCBI chr 3:804,188...808,574
Ensembl chr 3:804,113...808,187 		JBrowse link
G WNT7A Wnt family member 7A involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:70,538,802...70,602,464
Ensembl chr13:70,538,894...70,602,454 		JBrowse link
cartilage development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBS cystathionine beta-synthase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15622513) Ensembl
MGI		 PMID:15622513 GO_REF:0000107 NCBI chr13:206,205,942...206,231,363
Ensembl chr13:206,205,946...206,230,248 		JBrowse link
G COL1A1 collagen type I alpha 1 chain acts_upstream_of_or_within ISO (PMID:18248096) MGI PMID:18248096 NCBI chr12:26,379,087...26,397,180
Ensembl chr12:26,379,090...26,397,004 		JBrowse link
G COL2A1 collagen type II alpha 1 chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 mandibular condylar cartilage
(PMID:11680679)
(PMID:9022054)
(PMID:8989518)		 RGD
MGI
Ensembl		 PMID:8989518 PMID:9022054 PMID:11680679 PMID:12924823 GO_REF:0000107 RGD:8661659 NCBI chr 5:78,350,131...78,380,893
Ensembl chr 5:78,350,137...78,380,718 		JBrowse link
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21185280), (PMID:23958822) Ensembl
MGI		 PMID:21185280 PMID:23958822 GO_REF:0000107 NCBI chr 4:20,645,002...20,935,769
Ensembl chr 4:20,645,610...20,935,540 		JBrowse link
G GHR growth hormone receptor ISO RGD PMID:15749813 RGD:2307373 NCBI chr16:27,126,300...27,422,618
Ensembl chr16:27,126,734...27,421,449 		JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14668414) Ensembl
MGI		 PMID:14668414 GO_REF:0000107 NCBI chr18:45,388,523...45,392,190
Ensembl chr18:45,388,375...45,391,953 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:14668414) MGI PMID:14668414 NCBI chr15:81,906,654...81,910,765
Ensembl chr15:81,908,460...81,911,282 		JBrowse link
G HSPG2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO (PMID:10545953) MGI PMID:10545953 NCBI chr 6:79,849,691...79,958,283
Ensembl chr 6:79,849,698...79,958,334 		JBrowse link
G SHOX2 SHOX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16537395) Ensembl
MGI		 PMID:16537395 GO_REF:0000107 NCBI chr13:97,879,586...97,892,276
Ensembl chr13:97,879,281...97,889,785 		JBrowse link
G SIK3 SIK family kinase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22318228) Ensembl
MGI		 PMID:22318228 GO_REF:0000107 NCBI chr 9:44,223,227...44,471,689
Ensembl chr 9:44,223,232...44,513,831 		JBrowse link
G TRPV4 transient receptor potential cation channel subfamily V member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:41,125,819...41,169,582
Ensembl chr14:41,125,869...41,169,578 		JBrowse link
cartilage morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HAND1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17764670) Ensembl
MGI		 PMID:17764670 GO_REF:0000107 NCBI chr16:68,679,977...68,683,346
Ensembl chr16:68,677,963...68,683,342 		JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17764670) Ensembl
MGI		 PMID:17764670 GO_REF:0000107 NCBI chr14:16,460,089...16,462,979
Ensembl chr14:16,459,971...16,462,207 		JBrowse link
G HOXA5 homeobox A5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441679) Ensembl
MGI		 PMID:9441679 GO_REF:0000107 NCBI chr18:45,429,691...45,432,723
Ensembl chr18:45,421,663...45,432,885 		JBrowse link
G MEF2C myocyte enhancer factor 2C acts_upstream_of_or_within ISO (PMID:17420000) MGI PMID:17420000 NCBI chr 2:96,122,407...96,296,927
Ensembl chr 2:96,124,168...96,296,810 		JBrowse link
G MSX1 msh homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12489152) Ensembl
MGI		 PMID:12489152 GO_REF:0000107 NCBI chr 8:5,628,381...5,632,375
Ensembl chr 8:5,628,380...5,632,607 		JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17376812) Ensembl
MGI		 PMID:17376812 GO_REF:0000107 NCBI chr17:51,546,446...51,552,498
Ensembl chr17:51,546,477...51,552,499 		JBrowse link
G SNAI2 snail family transcriptional repressor 2 acts_upstream_of_or_within ISO (PMID:17376812) MGI PMID:17376812 NCBI chr 4:79,264,880...79,268,475
Ensembl chr 4:79,264,880...79,268,475 		JBrowse link
chondroblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan ISO RGD PMID:20001227 RGD:2315747 NCBI chr 7:54,449,830...54,520,606
Ensembl chr 7:54,449,816...54,519,194 		JBrowse link
G CCN1 cellular communication network factor 1 involved_in
acts_upstream_of
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441684) Ensembl
MGI		 PMID:9441684 GO_REF:0000107 NCBI chr 4:130,392,404...130,395,179
Ensembl chr 4:130,392,407...130,395,150 		JBrowse link
G FGF2 fibroblast growth factor 2 involved_in ISO (PMID:17167778) UniProt PMID:17167778 NCBI chr 8:101,278,877...101,344,084
Ensembl chr 8:101,278,885...101,343,916 		JBrowse link
G FGF4 fibroblast growth factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:3,527,113...3,529,011
Ensembl chr 2:3,526,914...3,529,874 		JBrowse link
G GDF5 growth differentiation factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:38,792,854...38,796,806
Ensembl chr17:38,792,187...38,797,005 		JBrowse link
G RARA retinoic acid receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10684250) Ensembl
MGI		 PMID:10684250 GO_REF:0000107 NCBI chr12:22,047,449...22,085,759
Ensembl chr12:22,047,443...22,085,673 		JBrowse link
chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9664687) Ensembl
MGI		 PMID:9664687 GO_REF:0000107 NCBI chr 7:54,449,830...54,520,606
Ensembl chr 7:54,449,816...54,519,194 		JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B involved_in ISS AgBase GO_REF:0000024 NCBI chr 8:124,536,648...125,035,841
Ensembl chr 8:124,536,653...124,759,406 		JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:105,971,577...106,132,496
Ensembl chr15:105,970,428...106,135,730 		JBrowse link
G BPNT2 3'(2'), 5'-bisphosphate nucleotidase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18539921) Ensembl
MGI		 PMID:18539921 GO_REF:0000107 NCBI chr 4:75,191,256...75,210,988
Ensembl chr 4:75,191,257...75,215,906 		JBrowse link
G CHST11 carbohydrate sulfotransferase 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16079159) Ensembl
MGI		 PMID:16079159 GO_REF:0000107 NCBI chr 5:79,788,558...80,068,903
Ensembl chr 5:79,788,572...80,067,795 		JBrowse link
G CHSY1 chondroitin sulfate synthase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22280990) Ensembl
MGI		 PMID:22280990 GO_REF:0000107 NCBI chr 1:139,730,703...139,804,458
Ensembl chr 1:139,730,721...139,804,657 		JBrowse link
G COL11A1 collagen type XI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:4100752) Ensembl
MGI		 PMID:4100752 GO_REF:0000107 NCBI chr 4:115,638,381...115,841,679
Ensembl chr 4:115,634,172...115,840,708 		JBrowse link
G COMP cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22006726)
(PMID:17588960)		 Ensembl
MGI		 PMID:17588960 PMID:22006726 GO_REF:0000107 NCBI chr 2:59,061,409...59,068,951
Ensembl chr 2:59,061,426...59,069,564 		JBrowse link
G ECM1 extracellular matrix protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20138147) Ensembl
MGI		 PMID:20138147 GO_REF:0000107 NCBI chr 4:98,615,776...98,633,081
Ensembl chr 4:98,615,778...98,621,836 		JBrowse link
G EIF2AK3 eukaryotic translation initiation factor 2 alpha kinase 3 acts_upstream_of_or_within ISO (PMID:12865332) MGI PMID:12865332 NCBI chr 3:57,423,894...57,506,247
Ensembl chr 3:57,423,943...57,506,245 		JBrowse link
G FGF18 fibroblast growth factor 18 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17014841) Ensembl
MGI		 PMID:17014841 GO_REF:0000107 NCBI chr16:52,724,867...52,760,246
Ensembl chr16:52,725,356...52,759,791 		JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:14668414) Ensembl
MGI		 PMID:14668414 GO_REF:0000107 NCBI chr18:45,388,523...45,392,190
Ensembl chr18:45,388,375...45,391,953 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of ISO (PMID:14668414) MGI PMID:14668414 NCBI chr15:81,906,654...81,910,765
Ensembl chr15:81,908,460...81,911,282 		JBrowse link
G MIA3 MIA SH3 domain ER export factor 3 acts_upstream_of_or_within ISO (PMID:21606205) MGI PMID:21606205 NCBI chr10:11,362,489...11,428,844
Ensembl chr10:11,377,846...11,429,015 		JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:10742104) MGI PMID:10742104 NCBI chr16:49,765,587...49,771,745
Ensembl chr16:49,765,910...49,771,789 		JBrowse link
G RARG retinoic acid receptor gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:18,436,267...18,458,625
Ensembl chr 5:18,436,270...18,458,624 		JBrowse link
G RUNX2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10213384) Ensembl
MGI		 PMID:10213384 GO_REF:0000107 NCBI chr 7:40,106,581...40,353,304
Ensembl chr 7:40,106,532...40,460,687 		JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18729207) Ensembl
MGI		 PMID:18729207 GO_REF:0000107 NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,144...75,345,921 		JBrowse link
G SHOX2 SHOX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17481601) Ensembl
MGI		 PMID:17481601 GO_REF:0000107 NCBI chr13:97,879,586...97,892,276
Ensembl chr13:97,879,281...97,889,785 		JBrowse link
G SMPD3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24505141)
(PMID:17591962)		 Ensembl
MGI		 PMID:17591962 PMID:24505141 GO_REF:0000107 NCBI chr 6:28,938,287...29,025,397
Ensembl chr 6:28,938,290...29,025,357 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18415932) Ensembl
MGI		 PMID:18415932 GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315 		JBrowse link
G SULF1 sulfatase 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr 4:65,595,947...65,778,889
Ensembl chr 4:65,595,951...65,778,884 		JBrowse link
G SULF2 sulfatase 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr17:49,663,721...49,805,118
Ensembl chr17:49,663,731...49,804,577 		JBrowse link
chondrocyte development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SERPINH1 serpin family H member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22492985) Ensembl
MGI		 PMID:22492985 GO_REF:0000107 NCBI chr 9:9,782,939...9,794,485
Ensembl chr 9:9,783,042...9,794,483 		JBrowse link
G SMPD3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21788370) Ensembl
MGI		 PMID:21788370 GO_REF:0000107 NCBI chr 6:28,938,287...29,025,397
Ensembl chr 6:28,938,290...29,025,357 		JBrowse link
chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:19,547,003...19,920,780
Ensembl chr16:19,547,011...19,920,513 		JBrowse link
G ADAMTS7 ADAM metallopeptidase with thrombospondin type 1 motif 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:47,919,398...47,994,528
Ensembl chr 7:47,929,033...47,994,453 		JBrowse link
G ARID5A AT-rich interaction domain 5A acts_upstream_of_or_within ISO (PMID:21346191) MGI PMID:21346191 NCBI chr 3:46,701,628...46,714,121
Ensembl chr 3:46,701,632...46,714,113 		JBrowse link
G BMP2 bone morphogenetic protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:15,750,487...15,762,982
Ensembl chr17:15,749,835...15,761,195 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:17481601) Ensembl
MGI		 PMID:17481601 GO_REF:0000107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,146...183,422,637 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:87,743,270...87,891,790
Ensembl chr14:87,742,459...87,891,790 		JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18363966) Ensembl
MGI		 PMID:18363966 GO_REF:0000107 NCBI chr 8:124,536,648...125,035,841
Ensembl chr 8:124,536,653...124,759,406 		JBrowse link
G CCN2 cellular communication network factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15305294) Ensembl
MGI		 PMID:15305294 GO_REF:0000107 NCBI chr 1:31,674,398...31,677,697
Ensembl chr 1:31,674,394...31,677,691 		JBrowse link
G CCN3 cellular communication network factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:19,505,698...19,514,481
Ensembl chr 4:19,505,701...19,514,406 		JBrowse link
G CHRDL2 chordin like 2 acts_upstream_of_or_within ISO (PMID:14660436) MGI PMID:14660436 NCBI chr 9:9,017,691...9,053,527
Ensembl chr 9:9,017,690...9,053,554 		JBrowse link
G COL11A2 collagen type XI alpha 2 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11668593) Ensembl
MGI		 PMID:11668593 GO_REF:0000107 NCBI chr 7:25,204,496...25,234,880
Ensembl chr 7:25,204,497...25,234,888 		JBrowse link
G COL2A1 collagen type II alpha 1 chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11680679), (PMID:7590256) RGD
MGI
Ensembl		 PMID:7590256 PMID:11680679 PMID:21627568 GO_REF:0000107 RGD:5134342 NCBI chr 5:78,350,131...78,380,893
Ensembl chr 5:78,350,137...78,380,718 		JBrowse link
G COL3A1 collagen type III alpha 1 chain involved_in ISO (PMID:31655293) MGI PMID:31655293 NCBI chr15:93,556,914...93,595,678
Ensembl chr15:93,526,603...93,596,363 		JBrowse link
G COL9A1 collagen type IX alpha 1 chain ISO RGD PMID:8992886 RGD:1600950 NCBI chr 1:50,403,355...50,498,356
Ensembl chr 1:50,403,361...50,498,332 		JBrowse link
G CREB3L2 cAMP responsive element binding protein 3 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:11,533,184...11,666,132
Ensembl chr18:11,533,183...11,666,113 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:15866163)
(PMID:16818445)		 Ensembl
MGI		 PMID:15866163 PMID:16818445 GO_REF:0000107 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,164,277...25,208,311 		JBrowse link
G CYTL1 cytokine like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17644814) Ensembl
MGI		 PMID:17644814 GO_REF:0000107 NCBI chr 8:5,455,576...5,460,861
Ensembl chr 8:5,455,671...5,460,861 		JBrowse link
G DLL4 delta like canonical Notch ligand 4 ISO RGD PMID:26872979 RGD:11521858 NCBI chr 1:130,376,720...130,386,411
Ensembl chr 1:130,376,721...130,386,411 		JBrowse link
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20080592), (PMID:20404326), (PMID:23458899), (PMID:28768899) Ensembl
MGI		 PMID:20080592 PMID:20404326 PMID:23458899 PMID:28768899 GO_REF:0000107 NCBI chr 4:20,645,002...20,935,769
Ensembl chr 4:20,645,610...20,935,540 		JBrowse link
G EXT2 exostosin glycosyltransferase 2 acts_upstream_of_or_within ISO (PMID:16236767) MGI PMID:16236767 NCBI chr 2:18,099,790...18,239,229
Ensembl chr 2:18,209,102...18,232,025 		JBrowse link
G FGF18 fibroblast growth factor 18 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:15781473) Ensembl
MGI		 PMID:15781473 GO_REF:0000107 NCBI chr16:52,724,867...52,760,246
Ensembl chr16:52,725,356...52,759,791 		JBrowse link
G FGF9 fibroblast growth factor 9 acts_upstream_of_or_within ISO (PMID:17544391) MGI PMID:17544391 NCBI chr11:1,554,648...1,581,938
Ensembl chr11:1,554,763...1,582,408 		JBrowse link
G FGFR1 fibroblast growth factor receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17544391) Ensembl
MGI		 PMID:17544391 GO_REF:0000107 NCBI chr15:48,053,895...48,106,634
Ensembl chr15:48,053,340...48,106,724 		JBrowse link
G FOSL2 FOS like 2, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15509771) Ensembl
MGI		 PMID:15509771 GO_REF:0000107 NCBI chr 3:110,820,403...110,842,903
Ensembl chr 3:110,823,666...110,843,068 		JBrowse link
G GDF5 growth differentiation factor 5 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:9885252) Ensembl
MGI		 PMID:9885252 GO_REF:0000107 NCBI chr17:38,792,854...38,796,806
Ensembl chr17:38,792,187...38,797,005 		JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23333501) Ensembl
MGI		 PMID:23333501 GO_REF:0000107 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:16284117) Ensembl
MGI		 PMID:16284117 GO_REF:0000107 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,072...52,697,900 		JBrowse link
G GPLD1 glycosylphosphatidylinositol specific phospholipase D1 involved_in ISO (MGI:3583476|PMID:15946906) UniProt PMID:15946906 MGI:3583476 NCBI chr 7:19,289,385...19,355,606
Ensembl chr 7:19,291,174...19,346,619 		JBrowse link
G HES5 hes family bHLH transcription factor 5 NOT|involved_in ISO (MGI:5285816|PMID:17093926) UniProt PMID:17093926 MGI:5285816 NCBI chr 6:64,409,110...64,410,541
Ensembl chr 6:64,408,956...64,410,881 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15073147) Ensembl
MGI		 PMID:15073147 GO_REF:0000107 NCBI chr 1:190,625,436...190,673,926
Ensembl chr 1:190,625,244...190,674,845 		JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in ISO (PMID:21484705) UniProt PMID:21484705 NCBI chr 5:30,188,521...30,329,635 JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:14668414) Ensembl
MGI		 PMID:14668414 GO_REF:0000107 NCBI chr18:45,388,523...45,392,190
Ensembl chr18:45,388,375...45,391,953 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of ISO (PMID:14668414) MGI PMID:14668414 NCBI chr15:81,906,654...81,910,765
Ensembl chr15:81,908,460...81,911,282 		JBrowse link
G HSPG2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO (PMID:10545953) MGI PMID:10545953 NCBI chr 6:79,849,691...79,958,283
Ensembl chr 6:79,849,698...79,958,334 		JBrowse link
G IFT80 intraflagellar transport 80 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23333501) Ensembl
MGI		 PMID:23333501 GO_REF:0000107 NCBI chr13:99,943,203...100,078,148
Ensembl chr13:99,943,208...100,078,148 		JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16284117)
(PMID:15951842)		 Ensembl
MGI		 PMID:15951842 PMID:16284117 GO_REF:0000107 NCBI chr15:121,083,750...121,090,548
Ensembl chr15:121,083,753...121,090,121 		JBrowse link
G LOC100359361 high mobility group AT-hook 2-like involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:191,094,785...191,105,394 JBrowse link
G LTBP3 latent transforming growth factor beta binding protein 3 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:11790802) Ensembl
MGI		 PMID:11790802 GO_REF:0000107 NCBI chr 2:6,701,455...6,720,191
Ensembl chr 2:6,701,510...6,720,153 		JBrowse link
G MAPK14 mitogen-activated protein kinase 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17644814) Ensembl
MGI		 PMID:17644814 GO_REF:0000107 NCBI chr 7:31,791,398...31,861,544
Ensembl chr 7:31,790,877...31,862,031 		JBrowse link
G MATN1 matrilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16877353) Ensembl
MGI		 PMID:16877353 GO_REF:0000107 NCBI chr 6:87,342,030...87,351,483
Ensembl chr 6:87,341,472...87,351,501 		JBrowse link
G MEF2C myocyte enhancer factor 2C involved_in
acts_upstream_of_or_within		 ISS
ISO		 (PMID:17336904) UniProt
MGI		 PMID:17336904 GO_REF:0000024 NCBI chr 2:96,122,407...96,296,927
Ensembl chr 2:96,124,168...96,296,810 		JBrowse link
G MEF2D myocyte enhancer factor 2D involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17336904) Ensembl
MGI		 PMID:17336904 GO_REF:0000107 NCBI chr 4:93,581,563...93,616,980
Ensembl chr 4:93,581,598...93,616,983 		JBrowse link
G NFIB nuclear factor I B involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:208,182,397...208,427,504
Ensembl chr 1:208,175,194...208,421,602 		JBrowse link
G NPR2 natriuretic peptide receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:236,508,994...236,529,172
Ensembl chr 1:236,508,998...236,529,128 		JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:118,368,471...118,765,107
Ensembl chr 3:118,757,920...118,765,102 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:37,890,200...37,897,935
Ensembl chr 4:37,890,203...37,897,929 		JBrowse link
G PPP3CC protein phosphatase 3 catalytic subunit gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:6,711,789...6,799,318
Ensembl chr14:6,711,442...6,794,667 		JBrowse link
G PRKCA protein kinase C alpha acts_upstream_of_or_within ISO (PMID:17644814) MGI PMID:17644814 NCBI chr12:12,882,287...13,268,647
Ensembl chr12:12,882,064...13,263,554 		JBrowse link
G PTH1R parathyroid hormone 1 receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16476422)
(PMID:9832460)		 Ensembl
MGI		 PMID:9832460 PMID:16476422 GO_REF:0000107 NCBI chr13:29,749,940...29,775,361
Ensembl chr13:29,753,326...29,775,348 		JBrowse link
G PTHLH parathyroid hormone like hormone acts_upstream_of ISO (PMID:8895385) MGI PMID:8895385 NCBI chr 5:45,750,968...45,763,421
Ensembl chr 5:45,751,292...45,763,415 		JBrowse link
G RB1 RB transcriptional corepressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:19,186,754...19,317,642
Ensembl chr11:19,186,761...19,317,690 		JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:14745966) MGI PMID:14745966 NCBI chr14:2,803,840...3,035,384
Ensembl chr14:2,804,061...3,035,296 		JBrowse link
G RUNX1 RUNX family transcription factor 1 involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr13:198,371,835...198,635,648
Ensembl chr13:198,371,837...198,638,189 		JBrowse link
G RUNX2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16476422)
(PMID:22916278)
(PMID:10072783)		 Ensembl
MGI
TreeGrafter		 PMID:10072783 PMID:16476422 PMID:22916278 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:40,106,581...40,353,304
Ensembl chr 7:40,106,532...40,460,687 		JBrowse link
G RUNX3 RUNX family transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:22916278) TreeGrafter
MGI
GO_Central		 PMID:22916278 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:82,531,203...82,595,044
Ensembl chr 6:82,531,559...82,595,026 		JBrowse link
G RUNX3 runt-related transcription factor 3 involved_in IEA TreeGrafter GO_REF:0000118
G SCX scleraxis bHLH transcription factor involved_in ISO (MGI:4418577|PMID:20059955) UniProt PMID:20059955 MGI:4418577 NCBI chr 4:500,884...503,276
Ensembl chr 4:500,526...503,193 		JBrowse link
G SHOX2 SHOX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22916278) Ensembl
MGI		 PMID:22916278 GO_REF:0000107 NCBI chr13:97,879,586...97,892,276
Ensembl chr13:97,879,281...97,889,785 		JBrowse link
G SIX2 SIX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20515681) Ensembl
MGI		 PMID:20515681 GO_REF:0000107 NCBI chr 3:95,460,046...95,463,428
Ensembl chr 3:95,459,945...95,463,251 		JBrowse link
G SLC26A2 solute carrier family 26 member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:150,996,868...151,027,483
Ensembl chr 2:150,996,686...151,022,148 		JBrowse link
G SLC39A14 solute carrier family 39 member 14 acts_upstream_of
involved_in		 ISO
IEA		 (MGI:4950776|PMID:21445361) UniProt
Ensembl		 PMID:21445361 GO_REF:0000107 MGI:4950776 NCBI chr14:6,639,485...6,687,929
Ensembl chr14:6,639,206...6,687,924 		JBrowse link
G SNX19 sorting nexin 19 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19877062) Ensembl
MGI		 PMID:19877062 GO_REF:0000107 NCBI chr 9:57,509,186...57,558,361
Ensembl chr 9:57,510,486...57,558,339 		JBrowse link
G SOX5 SRY-box transcription factor 5 involved_in ISO (MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235) UniProt PMID:11702786 PMID:14993235 MGI:2446758 MGI:3037234 NCBI chr 5:49,159,950...50,166,463
Ensembl chr 5:49,504,551...50,161,558 		JBrowse link
G SOX6 SRY-box transcription factor 6 involved_in ISO (MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235) UniProt PMID:11702786 PMID:14993235 MGI:2446758 MGI:3037234 NCBI chr 2:42,447,391...43,068,824
Ensembl chr 2:42,453,681...43,068,325 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA
ISS		 (PMID:12414734)
(PMID:11371614)		 Ensembl
MGI
TreeGrafter
GO_Central
UniProt		 PMID:11371614 PMID:12414734 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315 		JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 6:49,332,169...49,348,642
Ensembl chr 6:49,332,173...49,349,046 		JBrowse link
G TGFBI transforming growth factor beta induced ISO RGD PMID:16546826 RGD:1599388 NCBI chr 2:138,191,793...138,225,373
Ensembl chr 2:138,191,807...138,225,366 		JBrowse link
G TRPS1 transcriptional repressor GATA binding 1 acts_upstream_of_or_within ISO (PMID:18363966) MGI PMID:18363966 NCBI chr 4:22,905,627...23,162,862
Ensembl chr 4:22,905,637...23,159,546 		JBrowse link
G TWSG1 twisted gastrulation BMP signaling modulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14681194) Ensembl
MGI		 PMID:14681194 GO_REF:0000107 NCBI chr 6:98,629,116...98,678,322
Ensembl chr 6:98,625,505...98,678,258 		JBrowse link
G WNT10B Wnt family member 10B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:14,997,377...15,013,928
Ensembl chr 5:14,997,381...15,003,567 		JBrowse link
G WNT2B Wnt family member 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:107,906,141...107,923,343
Ensembl chr 4:107,903,502...107,921,118 		JBrowse link
G WNT5B Wnt family member 5B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:68,627,158...68,731,938
Ensembl chr 5:68,627,185...68,732,265 		JBrowse link
G WNT7A Wnt family member 7A involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:70,538,802...70,602,464
Ensembl chr13:70,538,894...70,602,454 		JBrowse link
G WNT9A Wnt family member 9A acts_upstream_of ISO (PMID:16818445) MGI PMID:16818445 NCBI chr 2:51,102,757...51,128,346
Ensembl chr 2:51,102,763...51,128,346 		JBrowse link
chondrocyte differentiation involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN2 axin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19623616) Ensembl
MGI		 PMID:19623616 GO_REF:0000107 NCBI chr12:12,311,293...12,343,207
Ensembl chr12:12,311,298...12,343,200 		JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25639508) Ensembl
MGI		 PMID:25639508 GO_REF:0000107 NCBI chr15:121,083,750...121,090,548
Ensembl chr15:121,083,753...121,090,121 		JBrowse link
G SCUBE2 signal peptide, CUB domain and EGF like domain containing 2 acts_upstream_of_or_within ISO (PMID:25639508) MGI PMID:25639508 NCBI chr 9:389,806...457,651 JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315 		JBrowse link
G TRIP11 thyroid hormone receptor interactor 11 acts_upstream_of_or_within ISO (PMID:20089971) MGI PMID:20089971 NCBI chr 7:113,524,406...113,600,411
Ensembl chr 7:113,524,430...113,600,088 		JBrowse link
chondrocyte hypertrophy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23958822) Ensembl
MGI		 PMID:23958822 GO_REF:0000107 NCBI chr 4:20,645,002...20,935,769
Ensembl chr 4:20,645,610...20,935,540 		JBrowse link
G MEX3C mex-3 RNA binding family member C involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22357625) Ensembl
MGI		 PMID:22357625 GO_REF:0000107 NCBI chr 1:100,678,452...100,699,277
Ensembl chr 1:100,676,660...100,699,403 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315 		JBrowse link
growth plate cartilage axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STC1 stanniocalcin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:7,952,175...7,961,365
Ensembl chr14:7,950,434...7,961,566 		JBrowse link
growth plate cartilage chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL27A1 collagen type XXVII alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22206015) Ensembl
MGI		 PMID:22206015 GO_REF:0000107 NCBI chr 1:254,768,576...254,924,893
Ensembl chr 1:254,770,093...254,923,823 		JBrowse link
G POC1A POC1 centriolar protein A acts_upstream_of_or_within ISO (PMID:26496357) MGI PMID:26496357 NCBI chr13:34,227,884...34,308,099
Ensembl chr13:34,227,457...34,308,083 		JBrowse link
growth plate cartilage chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA6 annexin A6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:71,857,229...71,913,723
Ensembl chr16:71,857,258...71,913,723 		JBrowse link
G ATF2 activating transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:80,984,969...81,076,573
Ensembl chr15:80,985,126...81,081,014 		JBrowse link
G IFT80 intraflagellar transport 80 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26098911) Ensembl
MGI		 PMID:26098911 GO_REF:0000107 NCBI chr13:99,943,203...100,078,148
Ensembl chr13:99,943,208...100,078,148 		JBrowse link
G NPPC natriuretic peptide C involved_in ISS UniProt GO_REF:0000024 NCBI chr15:132,504,669...132,509,688
Ensembl chr15:132,506,474...132,509,673 		JBrowse link
growth plate cartilage chondrocyte growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RARG retinoic acid receptor gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:18,436,267...18,458,625
Ensembl chr 5:18,436,270...18,458,624 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315 		JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21420963) Ensembl
MGI		 PMID:21420963 GO_REF:0000107 NCBI chr13:16,784,370...16,875,828
Ensembl chr13:16,784,490...16,878,160 		JBrowse link
growth plate cartilage chondrocyte morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MATN1 matrilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16877353) Ensembl
MGI		 PMID:16877353 GO_REF:0000107 NCBI chr 6:87,342,030...87,351,483
Ensembl chr 6:87,341,472...87,351,501 		JBrowse link
growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF2 activating transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:80,984,969...81,076,573
Ensembl chr15:80,985,126...81,081,014 		JBrowse link
G CER1 cerberus 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:207,817,095...207,821,800
Ensembl chr 1:207,818,175...207,822,291 		JBrowse link
G NPPC natriuretic peptide C involved_in ISS UniProt GO_REF:0000024 NCBI chr15:132,504,669...132,509,688
Ensembl chr15:132,506,474...132,509,673 		JBrowse link
growth plate cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL2A1 collagen type II alpha 1 chain ISO spheno-occipital synchondrosis RGD PMID:20591638 RGD:8661256 NCBI chr 5:78,350,131...78,380,893
Ensembl chr 5:78,350,137...78,380,718 		JBrowse link
G COL9A1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO (PMID:18467703)
(PMID:18191556)		 MGI PMID:18191556 PMID:18467703 NCBI chr 1:50,403,355...50,498,356
Ensembl chr 1:50,403,361...50,498,332 		JBrowse link
G COMP cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18467703)
(PMID:18191556)
(PMID:17588960)		 Ensembl
MGI		 PMID:17588960 PMID:18191556 PMID:18467703 GO_REF:0000107 NCBI chr 2:59,061,409...59,068,951
Ensembl chr 2:59,061,426...59,069,564 		JBrowse link
G FOSL2 FOS like 2, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15509771) Ensembl
MGI		 PMID:15509771 GO_REF:0000107 NCBI chr 3:110,820,403...110,842,903
Ensembl chr 3:110,823,666...110,843,068 		JBrowse link
G IFT80 intraflagellar transport 80 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26098911) Ensembl
MGI		 PMID:26098911 GO_REF:0000107 NCBI chr13:99,943,203...100,078,148
Ensembl chr13:99,943,208...100,078,148 		JBrowse link
G MMP13 matrix metallopeptidase 13 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21444811) Ensembl
MGI		 PMID:21444811 GO_REF:0000107 NCBI chr 9:33,549,003...33,616,700
Ensembl chr 9:33,549,008...33,561,162 		JBrowse link
G NPR2 natriuretic peptide receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:236,508,994...236,529,172
Ensembl chr 1:236,508,998...236,529,128 		JBrowse link
G RARA retinoic acid receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19389355) Ensembl
MGI		 PMID:19389355 GO_REF:0000107 NCBI chr12:22,047,449...22,085,759
Ensembl chr12:22,047,443...22,085,673 		JBrowse link
G RARB retinoic acid receptor beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19389355) Ensembl
MGI		 PMID:19389355 GO_REF:0000107 NCBI chr13:12,336,387...12,507,688
Ensembl chr13:12,336,972...12,507,680 		JBrowse link
G RARG retinoic acid receptor gamma involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19389355) Ensembl
MGI		 PMID:19389355 GO_REF:0000107 NCBI chr 5:18,436,267...18,458,625
Ensembl chr 5:18,436,270...18,458,624 		JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21420963) Ensembl
MGI		 PMID:21420963 GO_REF:0000107 NCBI chr13:16,784,370...16,875,828
Ensembl chr13:16,784,490...16,878,160 		JBrowse link
G THBS1 thrombospondin 1 acts_upstream_of_or_within ISO (PMID:18467703) MGI PMID:18467703 NCBI chr 1:131,728,781...131,746,098
Ensembl chr 1:131,728,784...131,746,115 		JBrowse link
G THBS3 thrombospondin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18467703) Ensembl
MGI		 PMID:18467703 GO_REF:0000107 NCBI chr 4:94,612,702...94,623,905
Ensembl chr 4:94,611,593...94,623,902 		JBrowse link
G ZMPSTE24 zinc metallopeptidase STE24 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11923874) Ensembl
MGI		 PMID:11923874 GO_REF:0000107 NCBI chr 6:96,008,307...96,057,131
Ensembl chr 6:96,008,455...96,062,951 		JBrowse link
mandibular condyle articular cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DSPP dentin sialophosphoprotein acts_upstream_of_or_within ISO (PMID:23900597) RGD
MGI		 PMID:20097540 PMID:23900597 RGD:15039407 NCBI chr 8:131,318,187...131,444,274
Ensembl chr 8:131,319,983...131,472,761 		JBrowse link
negative regulation of cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTSK cathepsin K acts_upstream_of_or_within ISO (PMID:19834056) MGI PMID:19834056 NCBI chr 4:98,389,459...98,404,969
Ensembl chr 4:98,391,428...98,404,961 		JBrowse link
G FRZB frizzled related protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18991062) Ensembl
MGI		 PMID:18991062 GO_REF:0000107 NCBI chr15:88,332,856...88,377,275
Ensembl chr15:88,332,860...88,377,247 		JBrowse link
G IDUA alpha-L-iduronidase acts_upstream_of_or_within ISO (PMID:19834056) MGI PMID:19834056 NCBI chr 8:334,604...351,970
Ensembl chr 8:334,617...351,969 		JBrowse link
G LEP leptin ISO RGD PMID:19876764 RGD:5128612 NCBI chr18:20,106,867...20,124,071
Ensembl chr18:20,106,868...20,123,323 		JBrowse link
G MIR21 microRNA mir-21 involved_in ISO (PMID:24577233) BHF-UCL PMID:24577233 NCBI chr12:36,065,267...36,065,358
Ensembl chr12:36,065,267...36,065,358 		JBrowse link
G NOG noggin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10684250) Ensembl
MGI		 PMID:10684250 GO_REF:0000107 NCBI chr12:32,891,321...32,892,206
Ensembl chr12:32,891,321...32,892,206 		JBrowse link
G RARA retinoic acid receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10684250) Ensembl
MGI		 PMID:10684250 GO_REF:0000107 NCBI chr12:22,047,449...22,085,759
Ensembl chr12:22,047,443...22,085,673 		JBrowse link
G RARB retinoic acid receptor beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10684250) Ensembl
MGI		 PMID:10684250 GO_REF:0000107 NCBI chr13:12,336,387...12,507,688
Ensembl chr13:12,336,972...12,507,680 		JBrowse link
G RARG retinoic acid receptor gamma involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10684250) Ensembl
MGI		 PMID:10684250 GO_REF:0000107 NCBI chr 5:18,436,267...18,458,625
Ensembl chr 5:18,436,270...18,458,624 		JBrowse link
G TGFB2 transforming growth factor beta 2 acts_upstream_of_or_within ISO (PMID:21780244) MGI PMID:21780244 NCBI chr10:8,306,136...8,435,307
Ensembl chr10:8,305,539...8,390,341 		JBrowse link
G WNT9A Wnt family member 9A acts_upstream_of_or_within ISO (PMID:19047045) MGI PMID:19047045 NCBI chr 2:51,102,757...51,128,346
Ensembl chr 2:51,102,763...51,128,346 		JBrowse link
negative regulation of chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PTHLH parathyroid hormone like hormone acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:90087) MGI
Ensembl		 PMID:90087 GO_REF:0000107 NCBI chr 5:45,750,968...45,763,421
Ensembl chr 5:45,751,292...45,763,415 		JBrowse link
G RFLNA refilin A involved_in IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr14:28,823,571...28,841,281
Ensembl chr14:28,823,575...28,845,719 		JBrowse link
G RFLNB refilin B involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:24436304) Ensembl
MGI
TreeGrafter
GO_Central		 PMID:24436304 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr12:47,307,657...47,316,652
Ensembl chr12:47,307,637...47,314,589 		JBrowse link
negative regulation of chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:19,547,003...19,920,780
Ensembl chr16:19,547,011...19,920,513 		JBrowse link
G ADAMTS7 ADAM metallopeptidase with thrombospondin type 1 motif 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:47,919,398...47,994,528
Ensembl chr 7:47,929,033...47,994,453 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17481601) Ensembl
MGI		 PMID:17481601 GO_REF:0000107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,146...183,422,637 		JBrowse link
G CCN4 cellular communication network factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:8,078,163...8,110,906
Ensembl chr 4:8,079,755...8,110,700 		JBrowse link
G CHADL chondroadherin like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:7,246,892...7,258,962
Ensembl chr 5:7,248,444...7,253,170 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16818445)
(PMID:15866163)		 Ensembl
MGI		 PMID:15866163 PMID:16818445 GO_REF:0000107 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,164,277...25,208,311 		JBrowse link
G EFEMP1 EGF containing fibulin extracellular matrix protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:85,407,677...85,473,251
Ensembl chr 3:85,407,677...85,473,252 		JBrowse link
G GDF5 growth differentiation factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:38,792,854...38,796,806
Ensembl chr17:38,792,187...38,797,005 		JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17328886) Ensembl
MGI		 PMID:17328886 GO_REF:0000107 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16284117) Ensembl
MGI		 PMID:16284117 GO_REF:0000107 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,072...52,697,900 		JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:136,617,041...136,629,293
Ensembl chr 1:136,617,105...136,629,292 		JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16284117) Ensembl
MGI		 PMID:16284117 GO_REF:0000107 NCBI chr15:121,083,750...121,090,548
Ensembl chr15:121,083,753...121,090,121 		JBrowse link
G LTBP3 latent transforming growth factor beta binding protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11790802) Ensembl
MGI		 PMID:11790802 GO_REF:0000107 NCBI chr 2:6,701,455...6,720,191
Ensembl chr 2:6,701,510...6,720,153 		JBrowse link
G MKX mohawk homeobox ISO RGD PMID:27370800 RGD:40924660 NCBI chr10:39,096,778...39,173,384
Ensembl chr10:39,096,782...39,172,198 		JBrowse link
G NKX3-2 NK3 homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:9,179,061...9,183,340
Ensembl chr 8:9,179,232...9,182,892 		JBrowse link
G PTH parathyroid hormone involved_in ISO PMID:11604398 CAFA PMID:11604398 RGD:12793028 NCBI chr 2:45,757,398...45,760,433
Ensembl chr 2:45,757,398...45,760,415 		JBrowse link
G PTHLH parathyroid hormone like hormone acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:90087)
(PMID:17328886)
(PMID:8895385)		 MGI
Ensembl		 PMID:90087 PMID:8895385 PMID:17328886 GO_REF:0000107 NCBI chr 5:45,750,968...45,763,421
Ensembl chr 5:45,751,292...45,763,415 		JBrowse link
G PTPN11 protein tyrosine phosphatase non-receptor type 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:39,202,165...39,292,041
Ensembl chr14:39,202,169...39,292,003 		JBrowse link
G RARB retinoic acid receptor beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10684250) Ensembl
MGI		 PMID:10684250 GO_REF:0000107 NCBI chr13:12,336,387...12,507,688
Ensembl chr13:12,336,972...12,507,680 		JBrowse link
G RARG retinoic acid receptor gamma involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10684250) Ensembl
MGI		 PMID:10684250 GO_REF:0000107 NCBI chr 5:18,436,267...18,458,625
Ensembl chr 5:18,436,270...18,458,624 		JBrowse link
G SNAI2 snail family transcriptional repressor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:79,264,880...79,268,475
Ensembl chr 4:79,264,880...79,268,475 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 (PMID:11371614) UniProt
MGI
Ensembl		 PMID:11371614 GO_REF:0000024 GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315 		JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:240,842,735...240,918,267
Ensembl chr 1:240,860,156...240,918,528 		JBrowse link
G WNT9A Wnt family member 9A acts_upstream_of_or_within ISO (PMID:16818445) MGI PMID:16818445 NCBI chr 2:51,102,757...51,128,346
Ensembl chr 2:51,102,763...51,128,346 		JBrowse link
negative regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DSPP dentin sialophosphoprotein acts_upstream_of_or_within ISO (PMID:26972716) MGI PMID:26972716 NCBI chr 8:131,318,187...131,444,274
Ensembl chr 8:131,319,983...131,472,761 		JBrowse link
positive regulation of cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP1 bone morphogenetic protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:3201241) MGI
Ensembl		 PMID:3201241 GO_REF:0000107 NCBI chr14:6,443,773...6,489,066
Ensembl chr14:6,443,912...6,489,063 		JBrowse link
G BMP10 bone morphogenetic protein 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:73,519,904...73,530,448
Ensembl chr 3:73,519,934...73,529,950 		JBrowse link
G BMP2 bone morphogenetic protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:3201241)
(PMID:10684250)		 MGI
Ensembl		 PMID:3201241 PMID:10684250 GO_REF:0000107 NCBI chr17:15,750,487...15,762,982
Ensembl chr17:15,749,835...15,761,195 		JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:3201241) MGI
Ensembl		 PMID:3201241 GO_REF:0000107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,146...183,422,637 		JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B involved_in ISS AgBase GO_REF:0000024 NCBI chr 8:124,536,648...125,035,841
Ensembl chr 8:124,536,653...124,759,406 		JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 involved_in ISS AgBase GO_REF:0000024 NCBI chr15:105,971,577...106,132,496
Ensembl chr15:105,970,428...106,135,730 		JBrowse link
G CCN1 cellular communication network factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441684) Ensembl
MGI		 PMID:9441684 GO_REF:0000107 NCBI chr 4:130,392,404...130,395,179
Ensembl chr 4:130,392,407...130,395,150 		JBrowse link
G GDF2 growth differentiation factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:88,506,083...88,513,416
Ensembl chr14:88,507,399...88,513,375 		JBrowse link
G MDK midkine involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:16,130,787...16,133,791
Ensembl chr 2:16,130,788...16,133,510 		JBrowse link
G SCX scleraxis bHLH transcription factor involved_in ISO (MGI:1343990|PMID:10477299) UniProt PMID:10477299 MGI:1343990 NCBI chr 4:500,884...503,276
Ensembl chr 4:500,526...503,193 		JBrowse link
G SMAD1 SMAD family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19251704) Ensembl
MGI		 PMID:19251704 GO_REF:0000107 NCBI chr 8:82,907,557...82,987,909
Ensembl chr 8:82,908,527...82,968,994 		JBrowse link
G SOX5 SRY-box transcription factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:49,159,950...50,166,463
Ensembl chr 5:49,504,551...50,161,558 		JBrowse link
G SOX6 SRY-box transcription factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:42,447,391...43,068,824
Ensembl chr 2:42,453,681...43,068,325 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 (PMID:19047045) UniProt
MGI
Ensembl		 PMID:19047045 GO_REF:0000024 GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315 		JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18991062) Ensembl
MGI		 PMID:18991062 GO_REF:0000107 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207 		JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:41,639,536...41,839,254
Ensembl chr 9:41,639,701...41,836,742 		JBrowse link
positive regulation of chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14668414) Ensembl
MGI		 PMID:14668414 GO_REF:0000107 NCBI chr18:45,388,523...45,392,190
Ensembl chr18:45,388,375...45,391,953 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:14668414) MGI PMID:14668414 NCBI chr15:81,906,654...81,910,765
Ensembl chr15:81,908,460...81,911,282 		JBrowse link
positive regulation of chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP6 bone morphogenetic protein 6 ISO RGD PMID:23077084 RGD:7242190 NCBI chr 7:5,058,817...5,208,868
Ensembl chr 7:5,058,817...5,210,270 		JBrowse link
G FGF18 fibroblast growth factor 18 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15781473) Ensembl
MGI		 PMID:15781473 GO_REF:0000107 NCBI chr16:52,724,867...52,760,246
Ensembl chr16:52,725,356...52,759,791 		JBrowse link
G GDF5 growth differentiation factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9885252)
(PMID:18363966)		 Ensembl
MGI		 PMID:9885252 PMID:18363966 GO_REF:0000107 NCBI chr17:38,792,854...38,796,806
Ensembl chr17:38,792,187...38,797,005 		JBrowse link
G GDF6 growth differentiation factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:40,473,015...40,491,142
Ensembl chr 4:40,472,935...40,490,033 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17328886) Ensembl
MGI		 PMID:17328886 GO_REF:0000107 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,072...52,697,900 		JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14668414) Ensembl
MGI		 PMID:14668414 GO_REF:0000107 NCBI chr18:45,388,523...45,392,190
Ensembl chr18:45,388,375...45,391,953 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:14668414) MGI PMID:14668414 NCBI chr15:81,906,654...81,910,765
Ensembl chr15:81,908,460...81,911,282 		JBrowse link
G LOXL2 lysyl oxidase like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:7,435,861...7,540,699
Ensembl chr14:7,435,867...7,540,704 		JBrowse link
G PKDCC protein kinase domain containing, cytoplasmic involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:98,258,456...98,268,539
Ensembl chr 3:98,258,463...98,268,553 		JBrowse link
G POR cytochrome p450 oxidoreductase ISO RGD PMID:19264869 RGD:2316785 NCBI chr 3:10,212,734...10,272,184
Ensembl chr 3:10,212,735...10,281,823 		JBrowse link
G PRKG2 protein kinase cGMP-dependent 2 ISO RGD PMID:15466490 RGD:150429792 NCBI chr 8:136,754,698...136,854,589
Ensembl chr 8:136,755,469...136,852,906 		JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit ISO RGD PMID:17884819 RGD:2298851 NCBI chr 2:6,594,869...6,602,684
Ensembl chr 2:6,593,969...6,603,469 		JBrowse link
G RUNX2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10072783) Ensembl
MGI		 PMID:10072783 GO_REF:0000107 NCBI chr 7:40,106,581...40,353,304
Ensembl chr 7:40,106,532...40,460,687 		JBrowse link
G SMAD3 SMAD family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:164,998,457...165,124,455
Ensembl chr 1:164,998,103...165,124,449 		JBrowse link
G SOX5 SRY-box transcription factor 5 involved_in IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:49,159,950...50,166,463
Ensembl chr 5:49,504,551...50,161,558 		JBrowse link
G SOX6 SRY-box transcription factor 6 involved_in IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:42,447,391...43,068,824
Ensembl chr 2:42,453,681...43,068,325 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in ISS
IBA
IEA		 UniProt
GO_Central
TreeGrafter
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315 		JBrowse link
G THRB thyroid hormone receptor beta ISO RGD PMID:15647824 RGD:1601663 NCBI chr13:10,900,716...11,360,587
Ensembl chr13:10,900,724...11,359,544 		JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:41,639,536...41,839,254
Ensembl chr 9:41,639,701...41,836,742 		JBrowse link
G ZNF219 zinc finger protein 219 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:78,028,560...78,043,491
Ensembl chr 7:78,035,228...78,043,464 		JBrowse link
positive regulation of chondrocyte hypertrophy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMAD7 SMAD family member 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:98,512,800...98,543,924
Ensembl chr 1:98,514,267...98,542,382 		JBrowse link
regulation of cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20501701) Ensembl
MGI		 PMID:20501701 GO_REF:0000107 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,146...183,422,637 		JBrowse link
G KAT2A lysine acetyltransferase 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:20,638,493...20,647,464
Ensembl chr12:20,638,497...20,647,461 		JBrowse link
G SCX scleraxis bHLH transcription factor involved_in ISO (MGI:4413438|PMID:18802027) UniProt PMID:18802027 MGI:4413438 NCBI chr 4:500,884...503,276
Ensembl chr 4:500,526...503,193 		JBrowse link
G SMPD3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24505141) Ensembl
MGI		 PMID:24505141 GO_REF:0000107 NCBI chr 6:28,938,287...29,025,397
Ensembl chr 6:28,938,290...29,025,357 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in ISS UniProt GO_REF:0000024 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315 		JBrowse link
G TGFB1 transforming growth factor beta 1 acts_upstream_of_or_within ISO (PMID:20501701) MGI PMID:20501701 NCBI chr 6:49,332,169...49,348,642
Ensembl chr 6:49,332,173...49,349,046 		JBrowse link
regulation of chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN2 axin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19623616) Ensembl
MGI		 PMID:19623616 GO_REF:0000107 NCBI chr12:12,311,293...12,343,207
Ensembl chr12:12,311,298...12,343,200 		JBrowse link
G RFLNA refilin A involved_in IEA InterPro GO_REF:0000002 NCBI chr14:28,823,571...28,841,281
Ensembl chr14:28,823,575...28,845,719 		JBrowse link
G RFLNB refilin B involved_in IEA InterPro GO_REF:0000002 NCBI chr12:47,307,657...47,316,652
Ensembl chr12:47,307,637...47,314,589 		JBrowse link
regulation of chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCN2 cellular communication network factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18597638) Ensembl
MGI		 PMID:18597638 GO_REF:0000107 NCBI chr 1:31,674,398...31,677,697
Ensembl chr 1:31,674,394...31,677,691 		JBrowse link
G GLG1 golgi glycoprotein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20530870) Ensembl
MGI		 PMID:20530870 GO_REF:0000107 NCBI chr 6:13,011,829...13,165,487
Ensembl chr 6:13,011,837...13,164,367 		JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22916278) Ensembl
MGI		 PMID:22916278 GO_REF:0000107 NCBI chr18:45,388,523...45,392,190
Ensembl chr18:45,388,375...45,391,953 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:22916278) MGI PMID:22916278 NCBI chr15:81,906,654...81,910,765
Ensembl chr15:81,908,460...81,911,282 		JBrowse link
G LNPK lunapark, ER junction formation factor acts_upstream_of_or_within ISO (PMID:22916278) MGI PMID:22916278 NCBI chr15:81,721,637...81,805,706
Ensembl chr15:81,721,644...81,805,680 		JBrowse link
G MAF MAF bZIP transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14512017) Ensembl
MGI		 PMID:14512017 GO_REF:0000107 NCBI chr 6:8,468,736...8,910,012
Ensembl chr 6:8,468,413...8,485,030 		JBrowse link
G MBOAT2 membrane bound O-acyltransferase domain containing 2 involved_in ISO (MGI:6467698|PMID:29196633) UniProt PMID:29196633 MGI:6467698 NCBI chr 3:127,243,797...127,365,443
Ensembl chr 3:127,243,275...127,360,057 		JBrowse link
G MDK midkine involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:16,130,787...16,133,791
Ensembl chr 2:16,130,788...16,133,510 		JBrowse link
G PTHLH parathyroid hormone like hormone involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:45,750,968...45,763,421
Ensembl chr 5:45,751,292...45,763,415 		JBrowse link
G SCIN scinderin involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:82,103,271...82,185,254
Ensembl chr 9:82,103,087...82,185,283 		JBrowse link
G SHOX2 SHOX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16537395) Ensembl
MGI		 PMID:16537395 GO_REF:0000107 NCBI chr13:97,879,586...97,892,276
Ensembl chr13:97,879,281...97,889,785 		JBrowse link
G SIX2 SIX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:95,460,046...95,463,428
Ensembl chr 3:95,459,945...95,463,251 		JBrowse link
G TRPS1 transcriptional repressor GATA binding 1 involved_in ISO (MGI:3848565|PMID:19389374) UniProt PMID:19389374 MGI:3848565 NCBI chr 4:22,905,627...23,162,862
Ensembl chr 4:22,905,637...23,159,546 		JBrowse link
regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CARM1 coactivator associated arginine methyltransferase 1 acts_upstream_of_or_within ISO (PMID:19725955) MGI PMID:19725955 NCBI chr 2:69,602,121...69,644,862
Ensembl chr 2:69,602,136...69,644,854 		JBrowse link
G POR cytochrome p450 oxidoreductase ISO positive regulation RGD PMID:19264869 RGD:2316785 NCBI chr 3:10,212,734...10,272,184
Ensembl chr 3:10,212,735...10,281,823 		JBrowse link
trachea cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RARA retinoic acid receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9376317) Ensembl
MGI		 PMID:9376317 GO_REF:0000107 NCBI chr12:22,047,449...22,085,759
Ensembl chr12:22,047,443...22,085,673 		JBrowse link
G RARG retinoic acid receptor gamma involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8388780) Ensembl
MGI		 PMID:8388780 GO_REF:0000107 NCBI chr 5:18,436,267...18,458,625
Ensembl chr 5:18,436,270...18,458,624 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24218621) Ensembl
MGI		 PMID:24218621 GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315 		JBrowse link
G SRF serum response factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24218621) Ensembl
MGI		 PMID:24218621 GO_REF:0000107 NCBI chr 7:38,213,300...38,223,686
Ensembl chr 7:38,213,487...38,222,144 		JBrowse link
trachea cartilage morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXA5 homeobox A5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441679) Ensembl
MGI		 PMID:9441679 GO_REF:0000107 NCBI chr18:45,429,691...45,432,723
Ensembl chr18:45,421,663...45,432,885 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:18256198) MGI PMID:18256198 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,662 		JBrowse link
G RSPO2 R-spondin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18256198) Ensembl
MGI		 PMID:18256198 GO_REF:0000107 NCBI chr 4:29,415,774...29,577,890
Ensembl chr 4:29,414,752...29,579,674 		JBrowse link
G WNT7B Wnt family member 7B acts_upstream_of_or_within ISO (PMID:18367557) MGI PMID:18367557 NCBI chr 5:3,521,412...3,572,322
Ensembl chr 5:3,521,288...3,572,314 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17805
    developmental process 6728
      anatomical structure development 6325
        animal organ development 3529
          cartilage development 236
            articular cartilage development + 8
            bronchus cartilage development + 2
            cartilage condensation + 23
            cartilage development involved in endochondral bone morphogenesis + 42
            cartilage morphogenesis + 12
            chondroblast differentiation 6
            chondrocyte differentiation + 132
            negative regulation of cartilage development + 34
            positive regulation of cartilage development + 33
            regulation of cartilage development + 76
            trachea cartilage development + 8
Path 2
Term Annotations click to browse term
  biological_process 17805
    developmental process 6728
      anatomical structure development 6325
        multicellular organism development 5116
          system development 4466
            skeletal system development 569
              cartilage development 236
                articular cartilage development + 8
                bronchus cartilage development + 2
                cartilage condensation + 23
                cartilage development involved in endochondral bone morphogenesis + 42
                cartilage morphogenesis + 12
                chondroblast differentiation 6
                chondrocyte differentiation + 132
                negative regulation of cartilage development + 34
                positive regulation of cartilage development + 33
                regulation of cartilage development + 76
                trachea cartilage development + 8
paths to the root