RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term: peroxisome biogenesis disorder 2B
Accession: DOID:0080622
browse the term
Definition: A peroxisomal biogenesis disorder that has_material_basis_in homozygous mutation in the PEX5 gene on chromosome 12p13.3. (DO)
Synonyms: exact_synonym: PBD2B
primary_id: OMIM:202370
xref: NCI:C155751
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Abcd1
ATP binding cassette subfamily D member 1
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:25741868
NCBI chr X:151,428,334...151,450,115
Ensembl chr X:151,428,578...151,450,115
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Acrbp
acrosin binding protein
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,851,149...157,864,211
Ensembl chr 4:157,841,841...157,864,213
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Acsm4
acyl-CoA synthetase medium-chain family member 4
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 1:174,053,931...174,078,345
Ensembl chr 1:174,053,931...174,078,341
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Aicda
activation-induced cytidine deaminase
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972
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Apobec1
apolipoprotein B mRNA editing enzyme catalytic subunit 1
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390
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Atn1
atrophin 1
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,554,287...157,568,092
Ensembl chr 4:157,551,276...157,568,132
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C1r
complement C1r
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,412,718...157,423,483
Ensembl chr 4:157,412,692...157,423,484
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C1rl
complement C1r subcomponent like
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,394,183...157,410,771
Ensembl chr 4:157,394,200...157,410,134
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C1s
complement C1s
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,430,249...157,442,438
Ensembl chr 4:157,430,117...157,442,303
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C3ar1
complement C3a receptor 1
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:156,074,747...156,084,680
Ensembl chr 4:156,075,389...156,084,701
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Cd163
CD163 molecule
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,085,080...157,118,470
Ensembl chr 4:157,085,093...157,117,878
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Cd27
CD27 molecule
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:158,030,700...158,035,862
Ensembl chr 4:158,030,703...158,035,592
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Cd4
Cd4 molecule
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,668,878...157,695,366
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Cdca3
cell division cycle associated 3
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,634,775...157,638,799
Ensembl chr 4:157,634,928...157,638,799
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Chd4
chromodomain helicase DNA binding protein 4
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,898,503...157,931,632
Ensembl chr 4:157,899,391...157,931,541
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Clec4a1
C-type lectin domain family 4, member A1
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:156,173,894...156,186,009
Ensembl chr 4:156,173,894...156,186,008
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Clec4a3
C-type lectin domain family 4, member A3
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:156,214,030...156,224,818
Ensembl chr 4:156,214,718...156,224,817
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Clec4b2
C-type lectin domain family 4, member B2
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:156,462,742...156,486,240
Ensembl chr 4:156,462,742...156,486,240
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Clec4d
C-type lectin domain family 4, member D
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:156,589,591...156,599,279
Ensembl chr 4:156,589,792...156,598,848
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Clec4e
C-type lectin domain family 4, member E
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:156,606,927...156,612,911
Ensembl chr 4:156,607,614...156,612,767
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Clec6a-ps1
C-type lectin domain family 6, member A, pseudogene 1
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:156,539,408...156,559,032
Ensembl chr 4:156,539,408...156,558,605 Ensembl chr 4:156,539,408...156,558,605
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Clstn3
calsyntenin 3
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,331,494...157,364,769
Ensembl chr 4:157,331,494...157,364,769
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Cops7a
COP9 signalosome subunit 7A
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,766,626...157,792,632
Ensembl chr 4:157,766,588...157,773,948
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Dppa3
developmental pluripotency-associated 3
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:155,851,461...155,854,845
Ensembl chr 4:155,815,296...155,854,861 Ensembl chr 5:155,815,296...155,854,861
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Emg1
EMG1 N1-specific pseudouridine methyltransferase
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,509,258...157,517,540
Ensembl chr 4:157,509,277...157,517,540
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Eno2
enolase 2
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,572,085...157,580,971
Ensembl chr 4:157,572,088...157,580,980
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Fam90a1a
family with sequence similarity 90 member A1A
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr16:70,098,439...70,106,147
Ensembl chr16:70,098,740...70,101,241
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Foxj2
forkhead box J2
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:156,047,043...156,073,540
Ensembl chr 4:156,046,969...156,073,518
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Gapdh
glyceraldehyde-3-phosphate dehydrogenase
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,962,312...157,967,158
Ensembl chr 4:157,962,343...157,966,235
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Gdf3
growth differentiation factor 3
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937
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Gnb3
G protein subunit beta 3
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,639,468...157,645,171
Ensembl chr 4:157,639,469...157,645,173
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Gpr162
G protein-coupled receptor 162
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,662,200...157,668,341
Ensembl chr 4:157,662,200...157,668,121
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Grcc10
gene rich cluster, C10 gene
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,551,276...157,552,924
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Iffo1
intermediate filament family orphan 1
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,945,075...157,962,302
Ensembl chr 4:157,945,107...157,962,302
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Ing4
inhibitor of growth family, member 4
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,841,882...157,850,519
Ensembl chr 4:157,841,951...157,850,265
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Lag3
lymphocyte activating 3
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,712,665...157,722,229
Ensembl chr 4:157,712,667...157,720,404
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Lpar5
lysophosphatidic acid receptor 5
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,870,493...157,883,979
Ensembl chr 4:157,881,796...157,882,950
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Lpcat3
lysophosphatidylcholine acyltransferase 3
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,468,397...157,509,889
Ensembl chr 4:157,468,290...157,509,880
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Lrrc23
leucine rich repeat containing 23
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,581,285...157,592,188
Ensembl chr 4:157,581,291...157,591,860
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Ltbr
lymphotoxin beta receptor
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:158,108,884...158,115,339
Ensembl chr 4:158,108,886...158,121,539
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Mfap5
microfibril associated protein 5
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:155,727,925...155,750,458
Ensembl chr 4:155,727,925...155,750,458
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Mir141
microRNA 141
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,523,239...157,523,332
Ensembl chr 4:157,523,239...157,523,332
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Mir200c
microRNA 200c
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,523,679...157,523,747
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Mlf2
myeloid leukemia factor 2
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,739,651...157,744,325
Ensembl chr 4:157,728,756...157,744,317
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Mrpl51
mitochondrial ribosomal protein L51
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,991,756...157,994,715
Ensembl chr 4:157,992,408...157,995,414
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Nanog
Nanog homeobox
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:155,943,737...155,951,116
Ensembl chr 4:155,943,737...155,951,116
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Ncapd2
non-SMC condensin I complex, subunit D2
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,968,814...157,992,314
Ensembl chr 4:157,968,815...157,992,020
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Necap1
NECAP endocytosis associated 1
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:156,103,935...156,119,068
Ensembl chr 4:156,103,988...156,119,068
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Nop2
NOP2 nucleolar protein
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459
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P3h3
prolyl 3-hydroxylase 3
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,646,242...157,662,035
Ensembl chr 4:157,646,243...157,662,035
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Pex5
peroxisomal biogenesis factor 5
ISO
CTD Direct Evidence: marker/mechanism ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
OMIM CTD ClinVar
PMID:7719337 PMID:9536098 PMID:10462504 PMID:16199547 PMID:17532062 PMID:17576681 PMID:18712838 PMID:20681997 PMID:21031596 PMID:25741868 PMID:26220973 PMID:26344566 PMID:27290639 PMID:28492532 PMID:30561787 PMID:32901917 PMID:33389129 PMID:33584783 PMID:34645488 PMID:35346031 More...
NCBI chr 4:157,270,671...157,296,432
Ensembl chr 4:157,270,672...157,296,431
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Phb2
prohibitin 2
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,517,662...157,522,268
Ensembl chr 4:157,517,577...157,522,272
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Pianp
PILR alpha associated neural protein
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,796,425...157,804,842
Ensembl chr 4:157,798,808...157,804,842
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Ptms
parathymosin
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,722,384...157,726,575
Ensembl chr 4:157,722,386...157,727,009
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Ptpn6
protein tyrosine phosphatase, non-receptor type 6
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,526,034...157,550,783
Ensembl chr 4:157,526,035...157,550,984
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Rimklb
ribosomal modification protein rimK-like family member B
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:155,664,392...155,706,888
Ensembl chr 4:155,664,375...155,706,711
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Scnn1a
sodium channel epithelial 1 subunit alpha
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:158,122,962...158,146,184
Ensembl chr 4:158,122,962...158,146,181
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Slc2a3
solute carrier family 2 member 3
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:155,960,944...156,026,000
Ensembl chr 4:155,960,946...156,025,472
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Spsb2
splA/ryanodine receptor domain and SOCS box containing 2
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,613,404...157,615,293
Ensembl chr 4:157,613,401...157,615,284
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Tapbpl
TAP binding protein-like
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:158,021,454...158,028,905
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Tnfrsf1a
TNF receptor superfamily member 1A
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:158,150,815...158,163,592
Ensembl chr 4:158,150,820...158,163,591
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Tpi1
triosephosphate isomerase 1
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,615,283...157,618,813
Ensembl chr 4:157,615,386...157,619,541
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Usp5
ubiquitin specific peptidase 5
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,619,663...157,634,681
Ensembl chr 4:157,619,643...157,634,711
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Vamp1
vesicle-associated membrane protein 1
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:158,012,634...158,019,350
Ensembl chr 4:158,012,663...158,019,349
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Zfp384
zinc finger protein 384
ISO
ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B
ClinVar
PMID:28492532
NCBI chr 4:157,810,263...157,840,052
Ensembl chr 4:157,810,352...157,839,766
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