Dgkb (diacylglycerol kinase beta) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: Dgkb (diacylglycerol kinase beta) Chinchilla lanigera
Analyze
Symbol: Dgkb
Name: diacylglycerol kinase beta
RGD ID: 8903025
Description: ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); lipid binding (ortholog); INVOLVED IN diacylglycerol metabolic process (ortholog); glycerolipid metabolic process (ortholog); lipid phosphorylation (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); FOUND IN cytosol (ortholog); extrinsic component of postsynaptic density membrane (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: diacylglycerol kinase, beta 90kDa
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541017,676,930 - 18,243,869 (-)Ensembl
ChiLan1.0NW_00495541017,677,375 - 18,304,409 (-)NCBIChiLan1.0ChiLan1.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dgkb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541017,676,930 - 18,243,869 (-)Ensembl
ChiLan1.0NW_00495541017,677,375 - 18,304,409 (-)NCBIChiLan1.0ChiLan1.0
DGKB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38714,145,049 - 14,974,858 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl714,145,049 - 14,974,833 (-)Ensemblhg38GRCh38
GRCh37714,184,674 - 15,014,483 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36714,153,770 - 14,847,413 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34713,988,847 - 14,654,128NCBI
Celera714,163,789 - 14,859,377 (-)NCBICelera
Cytogenetic Map7p21.2NCBI
HuRef714,066,966 - 14,764,852 (-)NCBIHuRef
CHM1_1714,184,411 - 14,880,671 (-)NCBICHM1_1
T2T-CHM13v2.0714,277,079 - 15,107,587 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2714,235,562 - 14,932,596 (-)NCBI
Dgkb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391237,930,169 - 38,684,238 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1237,867,725 - 38,684,238 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381237,880,169 - 38,634,239 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1237,817,726 - 38,634,239 (+)Ensemblmm10GRCm38
MGSCv371238,607,292 - 39,359,997 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361238,390,971 - 39,143,797 (+)NCBIMGSCv36mm8
Celera1239,316,859 - 40,057,925 (+)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1217.11NCBI
Dgkb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8660,368,101 - 61,124,420 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl660,368,519 - 61,124,420 (+)EnsemblGRCr8
mRatBN7.2654,640,948 - 55,397,210 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl654,641,614 - 55,397,043 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx654,944,919 - 55,700,844 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0655,259,803 - 56,015,739 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0654,718,536 - 55,474,194 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd661,828,595 - 62,584,481 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive661,242,626 - 61,998,517 (+)NCBILyon_Normotensive
Lyon_Hypertensive659,038,035 - 59,793,948 (+)NCBILyon_Hypertensive
F344_StmMcwi658,274,281 - 59,030,078 (+)NCBIF344_StmMcwi
Rnor_6.0657,516,351 - 58,277,385 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl657,516,713 - 58,277,279 (+)Ensemblrn6Rnor6.0
Rnor_5.0667,693,661 - 67,868,706 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.0667,113,446 - 67,580,128 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4656,715,327 - 57,479,656 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera653,755,433 - 54,502,520 (+)NCBICelera
RGSC_v3.1656,718,452 - 57,482,782 (+)NCBI
RH 3.4 Map6394.3RGD
Cytogenetic Map6q21NCBI
DGKB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2618,981,332 - 19,816,891 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1767,306,052 - 68,141,614 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0714,803,023 - 15,638,280 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1714,142,951 - 14,896,676 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl714,165,933 - 14,969,825 (-)EnsemblpanPan2panpan1.1
DGKB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11428,916,630 - 29,609,138 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1428,918,351 - 29,537,303 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1428,434,629 - 29,133,432 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01428,827,965 - 29,521,435 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1428,826,426 - 29,521,331 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11428,918,649 - 29,617,633 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01428,647,672 - 29,348,080 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01428,958,514 - 29,660,097 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dgkb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511873,288,180 - 74,005,408 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936546963,064 - 1,615,984 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936546964,387 - 1,615,928 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DGKB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl983,569,932 - 84,510,087 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1983,571,927 - 84,358,712 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2992,175,666 - 92,485,017 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DGKB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12143,176,715 - 43,929,833 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2143,176,989 - 43,746,258 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604260,567,411 - 61,318,935 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dgkb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473915,186,115 - 15,821,907 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473915,185,294 - 15,821,293 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Dgkb
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1751,149,152 - 51,863,944 (+)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005377328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013510618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013510619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013510620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013510621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013510623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013510624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01010991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01010992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01010993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01010994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01010995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01010996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01010997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01010998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01010999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01011000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01011001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01011002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDJ01401747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCLAT00000016955   ⟹   ENSCLAP00000016791
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541017,676,930 - 18,243,869 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000016956   ⟹   ENSCLAP00000016792
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541017,676,930 - 18,243,869 (-)Ensembl
RefSeq Acc Id: XM_005377328   ⟹   XP_005377385
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541017,677,375 - 18,304,409 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013510618   ⟹   XP_013366072
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541017,677,375 - 18,303,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013510619   ⟹   XP_013366073
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541017,677,375 - 18,303,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013510620   ⟹   XP_013366074
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541017,677,375 - 18,303,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013510621   ⟹   XP_013366075
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541017,677,375 - 18,303,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013510623   ⟹   XP_013366077
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541017,677,375 - 18,303,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013510624   ⟹   XP_013366078
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541017,677,375 - 18,243,674 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005377385   ⟸   XM_005377328
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013366072   ⟸   XM_013510618
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013366075   ⟸   XM_013510621
- Peptide Label: isoform X4
- UniProtKB: A0A8C2YQY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366074   ⟸   XM_013510620
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013366077   ⟸   XM_013510623
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013366073   ⟸   XM_013510619
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YQY7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366078   ⟸   XM_013510624
- Peptide Label: isoform X6
- Sequence:
Ensembl Acc Id: ENSCLAP00000016792   ⟸   ENSCLAT00000016956
Ensembl Acc Id: ENSCLAP00000016791   ⟸   ENSCLAT00000016955
Protein Domains
DAGKc   EF-hand   Phorbol-ester/DAG-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011522 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016955 ENTREZGENE
  ENSCLAT00000016955.1 UniProtKB/TrEMBL
  ENSCLAT00000016956 ENTREZGENE
  ENSCLAT00000016956.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.238.110 UniProtKB/TrEMBL
  2.60.200.40 UniProtKB/TrEMBL
  3.30.60.20 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
  Probable inorganic polyphosphate/atp-NAD kinase, domain 1 UniProtKB/TrEMBL
InterPro ATP-NAD_kinase_N UniProtKB/TrEMBL
  C1-like_sf UniProtKB/TrEMBL
  C1_DGKbeta-like_rpt1 UniProtKB/TrEMBL
  C1_DGKbeta_rpt2 UniProtKB/TrEMBL
  DAG_kinase_typeI_N UniProtKB/TrEMBL
  DGK UniProtKB/TrEMBL
  DGK_typeI_N_sf UniProtKB/TrEMBL
  Diacylglycerol_kin_accessory UniProtKB/TrEMBL
  Diacylglycerol_kinase_cat_dom UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  NAD/diacylglycerol_kinase_sf UniProtKB/TrEMBL
  PE/DAG-bd UniProtKB/TrEMBL
NCBI Gene Dgkb ENTREZGENE
PANTHER DIACYLGLYCEROL KINASE BETA UniProtKB/TrEMBL
  PTHR11255 UniProtKB/TrEMBL
Pfam C1_1 UniProtKB/TrEMBL
  DAG_kinase_N UniProtKB/TrEMBL
  DAGK_acc UniProtKB/TrEMBL
  DAGK_cat UniProtKB/TrEMBL
  EF-hand_7 UniProtKB/TrEMBL
PROSITE DAGK UniProtKB/TrEMBL
  EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  ZF_DAG_PE_1 UniProtKB/TrEMBL
  ZF_DAG_PE_2 UniProtKB/TrEMBL
SMART DAGKa UniProtKB/TrEMBL
  DAGKc UniProtKB/TrEMBL
  EFh UniProtKB/TrEMBL
  SM00109 UniProtKB/TrEMBL
Superfamily-SCOP SSF111331 UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
  SSF57889 UniProtKB/TrEMBL
UniProt A0A8C2YQY2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YQY7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Dgkb  diacylglycerol kinase beta    diacylglycerol kinase, beta 90kDa  Symbol and/or name change 5135510 APPROVED