Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | atrial fibrillation | | ISO | DGKB (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:29892015 and PMID:30061737 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | atrial fibrillation | | ISO | DGKB (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:29892015 and PMID:30061737 | |
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# | Reference Title | Reference Citation |
1. | Electronic Transfer of Homolog Data | MGD and Homologene mouse data transfer |
2. | MGDs mouse GO annotations | MGD data from the GO Consortium |
3. | Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. | Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48. |
4. | Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
5. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
6. | Mouse MP Annotation Import Pipeline | RGD automated import pipeline |
7. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
8. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:8889548 | PMID:10349636 | PMID:10922068 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:12477932 | PMID:12832407 | PMID:14610273 | PMID:14645530 | PMID:14681479 | PMID:15489334 |
PMID:16141072 | PMID:16141073 | PMID:16179923 | PMID:16602821 | PMID:17021016 | PMID:20657643 | PMID:21267068 | PMID:21319224 | PMID:21873635 | PMID:22590645 | PMID:23012479 | PMID:23503970 |
PMID:23681253 | PMID:23814057 | PMID:25446448 | PMID:27495014 | PMID:32581705 | PMID:35650438 | PMID:38187761 |
Dgkb (Mus musculus - house mouse) |
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DGKB (Homo sapiens - human) |
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Dgkb (Rattus norvegicus - Norway rat) |
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Dgkb (Chinchilla lanigera - long-tailed chinchilla) |
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DGKB (Pan paniscus - bonobo/pygmy chimpanzee) |
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DGKB (Canis lupus familiaris - dog) |
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Dgkb (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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DGKB (Sus scrofa - pig) |
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DGKB (Chlorocebus sabaeus - green monkey) |
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Dgkb (Heterocephalus glaber - naked mole-rat) |
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Variants in Dgkb
26679 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
26.MMHAP97FRA11.seq |
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px-27c2 |
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DGKB_583 |
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Dgkb |
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RefSeq Transcripts | NM_001361686 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001361688 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_178681 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006515067 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006515068 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006515070 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006515071 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017315019 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC116471 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AC141479 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AC157494 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AC157821 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AC166996 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK032509 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK038544 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK044516 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK047682 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK047785 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK047792 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK083222 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK122355 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK139408 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK161933 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AW493391 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC070461 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BG088459 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466526 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CJ128305 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CT009742 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CT025577 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000040500 ⟹ ENSMUSP00000037900 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000220606 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000220990 ⟹ ENSMUSP00000152378 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000221098 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000221176 ⟹ ENSMUSP00000152446 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000221540 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000221686 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000222337 ⟹ ENSMUSP00000152460 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001361686 ⟹ NP_001348615 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001361688 ⟹ NP_001348617 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_178681 ⟹ NP_848796 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006515067 ⟹ XP_006515130 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006515068 ⟹ XP_006515131 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006515070 ⟹ XP_006515133 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006515071 ⟹ XP_006515134 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_017315019 ⟹ XP_017170508 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001348615 | (Get FASTA) | NCBI Sequence Viewer |
NP_001348617 | (Get FASTA) | NCBI Sequence Viewer | |
NP_848796 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006515130 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006515131 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006515133 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006515134 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017170508 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH70461 | (Get FASTA) | NCBI Sequence Viewer |
BAC30034 | (Get FASTA) | NCBI Sequence Viewer | |
BAC31960 | (Get FASTA) | NCBI Sequence Viewer | |
BAC33123 | (Get FASTA) | NCBI Sequence Viewer | |
BAC33156 | (Get FASTA) | NCBI Sequence Viewer | |
BAC38814 | (Get FASTA) | NCBI Sequence Viewer | |
BAC65637 | (Get FASTA) | NCBI Sequence Viewer | |
BAE23997 | (Get FASTA) | NCBI Sequence Viewer | |
BAE36642 | (Get FASTA) | NCBI Sequence Viewer | |
EDL36839 | (Get FASTA) | NCBI Sequence Viewer | |
EDL36840 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000037900 | ||
ENSMUSP00000037900.8 | |||
ENSMUSP00000152378 | |||
ENSMUSP00000152378.2 | |||
ENSMUSP00000152446.2 | |||
ENSMUSP00000152460.2 | |||
GenBank Protein | Q6NS52 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_848796 ⟸ NM_178681 |
- Peptide Label: | isoform 2 |
- UniProtKB: | Q6NS52 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006515131 ⟸ XM_006515068 |
- Peptide Label: | isoform X1 |
- Sequence: |
RefSeq Acc Id: | XP_006515134 ⟸ XM_006515071 |
- Peptide Label: | isoform X3 |
- Sequence: |
RefSeq Acc Id: | XP_006515130 ⟸ XM_006515067 |
- Peptide Label: | isoform X1 |
- Sequence: |
RefSeq Acc Id: | XP_006515133 ⟸ XM_006515070 |
- Peptide Label: | isoform X3 |
- Sequence: |
RefSeq Acc Id: | XP_017170508 ⟸ XM_017315019 |
- Peptide Label: | isoform X2 |
- UniProtKB: | Q80TT5 (UniProtKB/Swiss-Prot), Q6NS52 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | NP_001348617 ⟸ NM_001361688 |
- Peptide Label: | isoform 2 |
RefSeq Acc Id: | NP_001348615 ⟸ NM_001361686 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q6NS52 (UniProtKB/Swiss-Prot), Q80TT5 (UniProtKB/Swiss-Prot) |
RefSeq Acc Id: | ENSMUSP00000152460 ⟸ ENSMUST00000222337 |
RefSeq Acc Id: | ENSMUSP00000037900 ⟸ ENSMUST00000040500 |
RefSeq Acc Id: | ENSMUSP00000152446 ⟸ ENSMUST00000221176 |
RefSeq Acc Id: | ENSMUSP00000152378 ⟸ ENSMUST00000220990 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q6NS52-F1-model_v2 | AlphaFold | Q6NS52 | 1-802 | view protein structure |
RGD ID: | 8678174 | ||||||||
Promoter ID: | EPDNEW_M17118 | ||||||||
Type: | initiation region | ||||||||
Name: | Dgkb_1 | ||||||||
Description: | Mus musculus diacylglycerol kinase, beta , transcript variant1, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M17119 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 8678176 | ||||||||
Promoter ID: | EPDNEW_M17119 | ||||||||
Type: | single initiation site | ||||||||
Name: | Dgkb_2 | ||||||||
Description: | Mus musculus diacylglycerol kinase, beta , transcript variant1, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M17118 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:2442474 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000036095 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000040500 | ENTREZGENE |
ENSMUST00000040500.9 | UniProtKB/Swiss-Prot | |
ENSMUST00000220990 | ENTREZGENE | |
ENSMUST00000220990.2 | UniProtKB/Swiss-Prot | |
ENSMUST00000221176.2 | UniProtKB/TrEMBL | |
ENSMUST00000222337.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.238.110 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
2.60.200.40 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
3.30.60.20 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
EF-hand | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
InterPro | ATP-NAD_kinase_N | UniProtKB/Swiss-Prot |
C1-like_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
C1_DGKbeta-like_rpt1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
C1_DGKbeta_rpt2 | UniProtKB/Swiss-Prot | |
DAG_kinase_typeI_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
DGK | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
DGK_typeI_N_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Diacylglycerol_kin_accessory | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Diacylglycerol_kinase_cat_dom | UniProtKB/Swiss-Prot | |
EF-hand-dom_pair | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
EF_Hand_1_Ca_BS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
EF_hand_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
NAD/diacylglycerol_kinase_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PE/DAG-bd | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Recoverin | UniProtKB/TrEMBL | |
KEGG Report | mmu:217480 | UniProtKB/Swiss-Prot |
MGD | MGI:2442474 | ENTREZGENE |
NCBI Gene | 217480 | ENTREZGENE |
PANTHER | CALCIUM BINDING PROTEINS | UniProtKB/TrEMBL |
DIACYLGLYCEROL KINASE BETA | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
NEURONAL CALCIUM SENSOR 1 | UniProtKB/TrEMBL | |
PTHR11255 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | C1_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
DAG_kinase_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
DAGK_acc | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
DAGK_cat | UniProtKB/Swiss-Prot | |
EF-hand_7 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Dgkb | PhenoGen |
PROSITE | DAGK | UniProtKB/Swiss-Prot |
EF_HAND_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
EF_HAND_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
ZF_DAG_PE_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
ZF_DAG_PE_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SMART | DAGKa | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
DAGKc | UniProtKB/Swiss-Prot | |
EFh | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SM00109 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Superfamily-SCOP | SSF111331 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SSF47473 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SSF57889 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
UniProt | A0A1Y7VLG5_MOUSE | UniProtKB/TrEMBL |
DGKB_MOUSE | UniProtKB/Swiss-Prot | |
Q3TSN3_MOUSE | UniProtKB/TrEMBL | |
Q6NS52 | ENTREZGENE | |
Q80TT5 | ENTREZGENE | |
Q8BKY7_MOUSE | UniProtKB/TrEMBL | |
Q8BKZ7_MOUSE | UniProtKB/TrEMBL | |
Q8BUN1_MOUSE | UniProtKB/TrEMBL | |
Q8BXP8_MOUSE | UniProtKB/TrEMBL | |
Q8BYR9_MOUSE | UniProtKB/TrEMBL | |
UniProt Secondary | Q80TT5 | UniProtKB/Swiss-Prot |