LOC102550373 (uncharacterized LOC102550373) - Rat Genome Database

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Gene: LOC102550373 (uncharacterized LOC102550373) Rattus norvegicus
Analyze
Symbol: LOC102550373
Name: uncharacterized LOC102550373
RGD ID: 7724923
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8636,955,091 - 36,977,123 (+)NCBIGRCr8
mRatBN7.2631,235,854 - 31,257,835 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0633,561,070 - 33,583,589 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0643,346,091 - 43,368,492 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera630,686,041 - 30,708,420 (+)NCBICelera
Cytogenetic Map6q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102550373
58 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XR_001838325
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8636,955,145 - 36,977,123 (+)NCBI
mRatBN7.2631,235,854 - 31,257,835 (+)NCBI
Rnor_6.0633,561,070 - 33,583,589 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005505784
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8636,955,145 - 36,977,123 (+)NCBI
mRatBN7.2631,235,854 - 31,257,835 (+)NCBI
RefSeq Acc Id: XR_005505785
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8636,955,134 - 36,977,123 (+)NCBI
mRatBN7.2631,235,854 - 31,257,835 (+)NCBI
RefSeq Acc Id: XR_005505786
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8636,956,922 - 36,977,123 (+)NCBI
mRatBN7.2631,237,634 - 31,257,835 (+)NCBI
RefSeq Acc Id: XR_010052515
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8636,955,145 - 36,977,123 (+)NCBI
RefSeq Acc Id: XR_010052516
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8636,955,091 - 36,977,123 (+)NCBI
RefSeq Acc Id: XR_010052517
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8636,955,093 - 36,977,123 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-38188 BioCyc
NCBI Gene LOC102550373 ENTREZGENE
PhenoGen LOC102550373 PhenoGen
RNAcentral URS0000CD0A78 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102550373  uncharacterized LOC102550373      Symbol and Name status set to provisional 70820 PROVISIONAL