LOC102554789 (uncharacterized LOC102554789) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC102554789 (uncharacterized LOC102554789) Rattus norvegicus
Analyze
Symbol: LOC102554789
Name: uncharacterized LOC102554789
RGD ID: 7663504
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8998,043,582 - 98,155,093 (+)NCBIGRCr8
mRatBN7.2990,595,971 - 90,640,971 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0997,162,462 - 97,177,182 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0996,853,941 - 96,869,740 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera988,154,927 - 88,253,537 (+)NCBICelera
Cytogenetic Map9q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102554789
378 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)97927151191616855Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)98636963192058970Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XR_005489305
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8998,043,645 - 98,074,240 (+)NCBI
mRatBN7.2990,606,356 - 90,623,686 (+)NCBI
RefSeq Acc Id: XR_005489306
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8998,043,582 - 98,091,512 (+)NCBI
mRatBN7.2990,596,084 - 90,640,971 (+)NCBI
RefSeq Acc Id: XR_005489307
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8998,043,645 - 98,091,512 (+)NCBI
mRatBN7.2990,606,356 - 90,640,971 (+)NCBI
RefSeq Acc Id: XR_010054858
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8998,043,645 - 98,091,512 (+)NCBI
RefSeq Acc Id: XR_010054859
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8998,043,645 - 98,091,512 (+)NCBI
RefSeq Acc Id: XR_010054860
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8998,043,645 - 98,155,093 (+)NCBI
RefSeq Acc Id: XR_010054861
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8998,043,645 - 98,091,512 (+)NCBI
RefSeq Acc Id: XR_010054862
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8998,043,582 - 98,091,512 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-26757 BioCyc
NCBI Gene LOC102554789 ENTREZGENE
PhenoGen LOC102554789 PhenoGen
RNAcentral URS0000CCF320 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102554789  uncharacterized LOC102554789      Symbol and Name status set to provisional 70820 PROVISIONAL