LOC100909866 (uncharacterized LOC100909866) - Rat Genome Database

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Gene: LOC100909866 (uncharacterized LOC100909866) Rattus norvegicus
Analyze
Symbol: LOC100909866
Name: uncharacterized LOC100909866
RGD ID: 6501250
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81735,766,054 - 35,803,304 (-)NCBIGRCr8
mRatBN7.21735,564,871 - 35,595,211 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01737,499,966 - 37,543,970 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01739,366,252 - 39,392,210 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1735,083,204 - 35,113,103 (-)NCBICelera
Cytogenetic Map17p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC100909866
182 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17999128640540197Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172393042179524188Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172738994653481766Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172418489079524188Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173199078450909196Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
4889891Eae32Experimental allergic encephalomyelitis QTL 324.80.0002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)172702794936146731Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172393042179524188Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2393042179524188Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172393042179524188Rat

Markers in Region
BE097633  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21735,586,641 - 35,586,792 (+)MAPPERmRatBN7.2
Rnor_6.01737,521,684 - 37,521,834NCBIRnor6.0
Rnor_5.01739,387,250 - 39,387,400UniSTSRnor5.0
RGSC_v3.41742,089,148 - 42,089,298UniSTSRGSC3.4
Celera1735,104,922 - 35,105,072UniSTS
RH 3.4 Map17407.2UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001834293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001834294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001834295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001834296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005495826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010059152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010059153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010059154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010059155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010059156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010059157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010059158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_001841923
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81735,766,054 - 35,803,205 (-)NCBI
mRatBN7.21735,564,871 - 35,594,706 (-)NCBI
Rnor_6.01737,499,966 - 37,542,409 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005495826
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81735,766,054 - 35,803,297 (-)NCBI
mRatBN7.21735,564,871 - 35,594,736 (-)NCBI
RefSeq Acc Id: XR_010059152
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81735,785,969 - 35,803,206 (-)NCBI
RefSeq Acc Id: XR_010059153
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81735,766,054 - 35,800,101 (-)NCBI
RefSeq Acc Id: XR_010059154
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81735,766,054 - 35,800,101 (-)NCBI
RefSeq Acc Id: XR_010059155
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81735,766,054 - 35,800,101 (-)NCBI
RefSeq Acc Id: XR_010059156
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81735,766,054 - 35,800,101 (-)NCBI
RefSeq Acc Id: XR_010059157
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81735,766,054 - 35,801,496 (-)NCBI
RefSeq Acc Id: XR_010059158
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81735,785,969 - 35,803,304 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-9495 BioCyc
NCBI Gene LOC100909866 ENTREZGENE
PhenoGen LOC100909866 PhenoGen
RNAcentral URS0000CCE970 RNACentral
  URS0000CCEB19 RNACentral
  URS0000CCF031 RNACentral
  URS0000CD0755 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-05 LOC100909866  uncharacterized LOC100909866      Symbol and Name status set to provisional 70820 PROVISIONAL