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Gene: C5h8orf88 (similar to human chromosome 8 open reading frame 88) Rattus norvegicus

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Symbol:

C5h8orf88

Name:

similar to human chromosome 8 open reading frame 88

RGD ID:

6487307

Description:

Orthologous to human C8orf88 (chromosome 8 open reading frame 88); INTERACTS WITH all-trans-retinoic acid (ortholog); avobenzone (ortholog); cisplatin (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC689147; LOC100912373; LOC689147; similar to chromosome 8 open reading frame 88; uncharacterized LOC100912373; uncharacterized protein C8orf88 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	33,127,385 - 33,152,914 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	33,126,632 - 33,174,768 (+)	Ensembl				GRCr8
mRatBN7.2	5	28,330,167 - 28,355,691 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	28,330,206 - 28,357,152 (+)	Ensembl				mRatBN7.2
Rnor_6.0	5	28,480,029 - 28,505,430 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	28,480,023 - 28,505,432 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	33,157,211 - 33,182,625 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	29,376,159 - 29,425,936 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	27,579,345 - 27,604,972 (+)	NCBI		Celera
Cytogenetic Map	5	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

all-trans-retinoic acid (ISO)

avobenzone (ISO)

cisplatin (ISO)

dorsomorphin (ISO)

entinostat (ISO)

FR900359 (ISO)

isobutanol (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

phenylmercury acetate (ISO)

SB 431542 (ISO)

trichostatin A (ISO)

valproic acid (ISO)

vorinostat (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

C5h8orf88
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	33,127,385 - 33,152,914 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	33,126,632 - 33,174,768 (+)	Ensembl				GRCr8
mRatBN7.2	5	28,330,167 - 28,355,691 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	28,330,206 - 28,357,152 (+)	Ensembl				mRatBN7.2
Rnor_6.0	5	28,480,029 - 28,505,430 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	28,480,023 - 28,505,432 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	33,157,211 - 33,182,625 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	29,376,159 - 29,425,936 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	27,579,345 - 27,604,972 (+)	NCBI		Celera
Cytogenetic Map	5	q13	NCBI

C8orf88
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	90,958,471 - 90,985,393 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	90,958,084 - 90,985,238 (-)	Ensembl			hg38	GRCh38
GRCh37	8	91,970,699 - 91,997,621 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	92,039,504 - 92,066,661 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	8	88,165,437 - 88,192,235 (-)	NCBI		Celera
Cytogenetic Map	8	q21.3	NCBI
HuRef	8	87,180,628 - 87,207,406 (-)	NCBI		HuRef
CHM1_1	8	92,011,369 - 92,038,131 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	92,083,394 - 92,110,315 (-)	NCBI		T2T-CHM13v2.0

Gm11837
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	14,929,908 - 14,953,030 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	14,929,851 - 14,953,031 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	14,929,828 - 14,953,031 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	14,929,908 - 14,953,030 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	14,857,829 - 14,892,537 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	14,857,055 - 14,880,594 (+)	NCBI		MGSCv36	mm8
Celera	4	14,731,411 - 14,754,640 (+)	NCBI		Celera
Cytogenetic Map	4	A2	NCBI
cM Map	4	6.44	NCBI

CUNH8orf88
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955417	7,738,254 - 7,758,867 (-)	NCBI	ChiLan1.0	ChiLan1.0

C7H8orf88
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	108,328,507 - 108,361,298 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	83,867,913 - 83,901,849 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	87,621,492 - 87,648,665 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	89,574,235 - 89,601,304 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	89,574,235 - 89,601,304 (-)	Ensembl			panPan2	panpan1.1

C29H8orf88
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	36,330,352 - 36,366,252 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	36,331,661 - 36,363,951 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	36,482,637 - 36,520,735 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	36,531,568 - 36,569,653 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	36,532,939 - 36,569,590 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	36,551,773 - 36,590,224 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	36,533,526 - 36,571,601 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	36,971,809 - 37,009,991 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CUNH8orf88
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	43,181,336 - 43,201,951 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936544	4,592,847 - 4,605,520 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936544	4,589,206 - 4,611,369 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C4H8orf88
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	45,923,487 - 45,984,595 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	45,923,468 - 45,984,591 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

C8H8orf88
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	86,028,535 - 86,051,130 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	86,025,153 - 86,050,548 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666039	54,812,892 - 54,835,557 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH8orf88
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624744	992,538 - 1,021,663 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624744	989,076 - 1,022,044 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in C5h8orf88
67 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	16
Count of miRNA genes:	14
Interacting mature miRNAs:	16
Transcripts:	ENSRNOT00000075067
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293666	Bmd38	Bone mineral density QTL 38	4.4		femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	5	13731153	43590997	Rat
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	32751649	77751649	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	23671493	79046465	Rat
1300117	Hrtrt8	Heart rate QTL 8	3.49		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	8627230	52665523	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	14606078	59606078	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	17576633	62576633	Rat
1578774	Tcas8	Tongue tumor susceptibility QTL 8	3.47		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	15707451	60707451	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat
2312562	Pur18	Proteinuria QTL 18	2.6	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	5	6922282	37468560	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	7065535	74335773	Rat
1641903	Alcrsp3	Alcohol response QTL 3			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	17486080	62486080	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	32751649	77751649	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	26023211	71023211	Rat
2303577	Gluco47	Glucose level QTL 47	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	16520019	61520019	Rat
1549901	Neudeg2	Neurodegradation QTL 2	4	0	nervous system integrity trait (VT:0010566)	mononuclear cell count (CMO:0002119)	5	31130421	48841739	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	17486080	62486080	Rat
2313085	Bss59	Bone structure and strength QTL 59	2.9	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	5	8627230	53627230	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	23671493	68671493	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
14	12	66	147	77	76	46	28	46	6	273	125	9	126	80	90	30	15	15

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001431986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_056985544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_056985545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_346399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_346400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000009718 ⟹ ENSRNOP00000009718

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	33,127,410 - 33,153,523 (+)	Ensembl
mRatBN7.2 Ensembl	5	28,330,206 - 28,357,152 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000075067 ⟹ ENSRNOP00000066440

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	28,480,023 - 28,505,432 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093129 ⟹ ENSRNOP00000076264

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	28,485,674 - 28,505,189 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093341 ⟹ ENSRNOP00000076278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	28,485,619 - 28,505,244 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093754 ⟹ ENSRNOP00000076287

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	28,480,048 - 28,497,205 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000138354 ⟹ ENSRNOP00000112074

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	33,127,410 - 33,174,768 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000139380 ⟹ ENSRNOP00000100605

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	33,127,410 - 33,152,912 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000162817 ⟹ ENSRNOP00000102971

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	33,126,632 - 33,152,912 (+)	Ensembl

RefSeq Acc Id:

XM_056985544 ⟹ XP_056841524

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	33,127,385 - 33,152,914 (+)	NCBI
mRatBN7.2	5	28,330,167 - 28,355,691 (+)	NCBI

RefSeq Acc Id:

XM_056985545 ⟹ XP_056841525

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	33,127,385 - 33,152,914 (+)	NCBI
mRatBN7.2	5	28,330,168 - 28,355,691 (+)	NCBI

RefSeq Acc Id:

XM_063261270 ⟹ XP_063117340

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	33,127,529 - 33,152,914 (+)	NCBI

RefSeq Acc Id:

XM_063261271 ⟹ XP_063117341

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	33,127,432 - 33,152,914 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001418915	(Get FASTA)	NCBI Sequence Viewer
	NP_001418916	(Get FASTA)	NCBI Sequence Viewer
	NP_001418917	(Get FASTA)	NCBI Sequence Viewer
	NP_001418918	(Get FASTA)	NCBI Sequence Viewer
	XP_056841524	(Get FASTA)	NCBI Sequence Viewer
	XP_056841525	(Get FASTA)	NCBI Sequence Viewer
	XP_063117340	(Get FASTA)	NCBI Sequence Viewer
	XP_063117341	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98471	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000009718.7
	ENSRNOP00000100605
	ENSRNOP00000100605.1
	ENSRNOP00000102971
	ENSRNOP00000102971.1
	ENSRNOP00000112074.1

Ensembl Acc Id:

ENSRNOP00000066440 ⟸ ENSRNOT00000075067

Ensembl Acc Id:

ENSRNOP00000076287 ⟸ ENSRNOT00000093754

Ensembl Acc Id:

ENSRNOP00000076278 ⟸ ENSRNOT00000093341

Ensembl Acc Id:

ENSRNOP00000076264 ⟸ ENSRNOT00000093129

RefSeq Acc Id:	XP_056841524 ⟸ XM_056985544
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_056841525 ⟸ XM_056985545
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000009718 ⟸ ENSRNOT00000009718

RefSeq Acc Id:	XP_063117341 ⟸ XM_063261271
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063117340 ⟸ XM_063261270
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q4C3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000102971 ⟸ ENSRNOT00000162817

Ensembl Acc Id:

ENSRNOP00000100605 ⟸ ENSRNOT00000139380

Ensembl Acc Id:

ENSRNOP00000112074 ⟸ ENSRNOT00000138354

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A1W2Q6G0-F1-model_v2	AlphaFold	A0A1W2Q6G0	1-131	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693584

Promoter ID:

EPDNEW_R4102

Type:

initiation region

Name:

LOC100912373_1

Description:

uncharacterized LOC100912373

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	28,480,026 - 28,480,086	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:6487307	AgrOrtholog
BioCyc Gene	G2FUF-41881	BioCyc
Ensembl Genes	ENSRNOG00000007256	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000047537	Ensembl
Ensembl Transcript	ENSRNOT00000009718.8	UniProtKB/TrEMBL
	ENSRNOT00000138354.1	UniProtKB/TrEMBL
	ENSRNOT00000139380	ENTREZGENE
	ENSRNOT00000139380.1	UniProtKB/TrEMBL
	ENSRNOT00000162817	ENTREZGENE
	ENSRNOT00000162817.1	UniProtKB/TrEMBL
NCBI Gene	LOC100912373	ENTREZGENE
PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN	UniProtKB/TrEMBL
	GRANULITO	UniProtKB/TrEMBL
PhenoGen	C5h8orf88	PhenoGen
RatGTEx	ENSRNOG00000007256	RatGTEx
	ENSRNOG00000047537	RatGTEx
UniProt	A0A8L2Q4C3	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L2F0_RAT	UniProtKB/TrEMBL
	A0ABK0LBP4_RAT	UniProtKB/TrEMBL
	A0ABK0LM87_RAT	UniProtKB/TrEMBL
	A6IIA1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-12-29	C5h8orf88	similar to human chromosome 8 open reading frame 88	C5h8orf88	similar to chromosome 8 open reading frame 88	Name changed	629549	APPROVED
2022-12-29	C5h8orf88	similar to chromosome 8 open reading frame 88	LOC100912373	uncharacterized LOC100912373	Name and Symbol changed	629549	APPROVED
2015-07-29	LOC100912373	uncharacterized LOC100912373	LOC689147	hypothetical protein LOC689147	Data merged from RGD:1596157	737654	PROVISIONAL
2012-07-05	LOC100912373	uncharacterized LOC100912373			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-01-09	LOC689147	hypothetical protein LOC689147	LOC679389	hypothetical protein LOC679389	Data merged from RGD:1589486	1643240	APPROVED
2006-11-20	LOC689147	hypothetical protein LOC689147			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC679389	hypothetical protein LOC679389			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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