Gm11837 (predicted gene 11837) - Rat Genome Database

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Gene: Gm11837 (predicted gene 11837) Mus musculus
Analyze
Symbol: Gm11837
Name: predicted gene 11837
RGD ID: 1624671
MGI Page MGI
Description: Is expressed in several structures, including heart; intestine; liver; lung; and metanephros. Orthologous to human C8orf88 (chromosome 8 open reading frame 88).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC100038514; uncharacterized protein C8orf88 homolog; uncharacterized protein LOC100038514
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39414,929,908 - 14,953,030 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl414,929,851 - 14,953,031 (+)EnsemblGRCm39 Ensembl
GRCm38414,929,828 - 14,953,031 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl414,929,908 - 14,953,030 (+)EnsemblGRCm38mm10GRCm38
MGSCv37414,857,829 - 14,892,537 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36414,857,055 - 14,880,594 (+)NCBIMGSCv36mm8
Celera414,731,411 - 14,754,640 (+)NCBICelera
Cytogenetic Map4A2NCBI
cM Map46.44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575   PMID:29716997  


Genomics

Comparative Map Data
Gm11837
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39414,929,908 - 14,953,030 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl414,929,851 - 14,953,031 (+)EnsemblGRCm39 Ensembl
GRCm38414,929,828 - 14,953,031 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl414,929,908 - 14,953,030 (+)EnsemblGRCm38mm10GRCm38
MGSCv37414,857,829 - 14,892,537 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36414,857,055 - 14,880,594 (+)NCBIMGSCv36mm8
Celera414,731,411 - 14,754,640 (+)NCBICelera
Cytogenetic Map4A2NCBI
cM Map46.44NCBI
C8orf88
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38890,958,471 - 90,985,393 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl890,958,471 - 90,985,238 (-)EnsemblGRCh38hg38GRCh38
GRCh37891,970,699 - 91,997,621 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36892,039,504 - 92,066,661 (-)NCBINCBI36Build 36hg18NCBI36
Celera888,165,437 - 88,192,235 (-)NCBICelera
Cytogenetic Map8q21.3NCBI
HuRef887,180,628 - 87,207,406 (-)NCBIHuRef
CHM1_1892,011,369 - 92,038,131 (-)NCBICHM1_1
T2T-CHM13v2.0892,083,394 - 92,110,315 (-)NCBIT2T-CHM13v2.0
C5h8orf88
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8533,127,385 - 33,152,914 (+)NCBIGRCr8
mRatBN7.2528,330,167 - 28,355,691 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl528,330,206 - 28,357,152 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0528,480,029 - 28,505,430 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl528,480,023 - 28,505,432 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0533,157,211 - 33,182,625 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4529,376,159 - 29,425,936 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera527,579,345 - 27,604,972 (+)NCBICelera
Cytogenetic Map5q13NCBI
CUNH8orf88
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554177,738,254 - 7,758,867 (-)NCBIChiLan1.0ChiLan1.0
C7H8orf88
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27108,328,507 - 108,361,298 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1883,867,913 - 83,901,849 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0887,621,492 - 87,648,665 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1889,574,235 - 89,601,304 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl889,574,235 - 89,601,304 (-)Ensemblpanpan1.1panPan2
C29H8orf88
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12936,330,352 - 36,366,252 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2936,331,661 - 36,363,951 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2936,482,637 - 36,520,735 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02936,531,568 - 36,569,653 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2936,532,939 - 36,569,590 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12936,551,773 - 36,590,224 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02936,533,526 - 36,571,601 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02936,971,809 - 37,009,991 (-)NCBIUU_Cfam_GSD_1.0
CUNH8orf88
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530343,181,336 - 43,201,951 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365444,592,847 - 4,605,520 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365444,589,206 - 4,611,369 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C4H8orf88
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl445,923,487 - 45,984,595 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1445,923,468 - 45,984,591 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CUNH8orf88
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1886,028,535 - 86,051,130 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl886,025,153 - 86,050,548 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603954,812,892 - 54,835,557 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH8orf88
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624744992,538 - 1,021,663 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624744989,076 - 1,022,044 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gm11837
1039 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:177
Count of miRNA genes:149
Interacting mature miRNAs:152
Transcripts:ENSMUST00000136992, ENSMUST00000137532, ENSMUST00000152024
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
11049579Lmr9b_mleishmaniasis resistance 9b (mouse)4120657234Mouse
11049580Lmr9a_mleishmaniasis resistance 9 (mouse)4120657234Mouse
10401115Pgia35_mproteoglycan induced arthritis 35 (mouse)Not determined41256237746562509Mouse
1558992Ses8_msalmonella enteritidis susceptibility 8 (mouse)Not determined4868324042683429Mouse
1301274Lmr9_mleishmaniasis resistance 9 (mouse)Not determined4120657234Mouse
1302010Wta1_mweight adult 1 (mouse)Not determined4868324042683429Mouse
4141302Ssrq5_mstress response QTL 5 (mouse)Not determined868324042683430Mouse
10401905Sicd3_mseizure-induced cell death 3 (mouse)Not determined4939552543760862Mouse
10412079Sm1_msusceptibility to Schistosoma mansoni infection 1 (mouse)Not determined4122955614Mouse
12880405Jcdq1_mjoint cartilage degeneration QTL 1 (mouse)41256237746562509Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
1301473Triglq1_mtriglyceride QTL 1 (mouse)Not determined4868324042683429Mouse
1301510Bbaa13_mB.burgdorferi-associated arthritis 13 (mouse)Not determined4126395649Mouse
1302125Lxw1_mlupus BXSB x NZW 1 (mouse)Not determined4868324042683429Mouse

Markers in Region
D17Jpk3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38414,962,612 - 14,962,739UniSTSGRCm38
MGSCv37414,889,759 - 14,889,886UniSTSGRCm37
Celera414,764,221 - 14,764,346UniSTS
Cytogenetic Map4A2UniSTS
cM Map1755.5UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000136992
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl414,930,661 - 14,953,030 (+)Ensembl
GRCm38.p6 Ensembl414,930,661 - 14,953,030 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137532
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl414,929,851 - 14,953,031 (+)Ensembl
GRCm38.p6 Ensembl414,929,908 - 14,952,893 (+)Ensembl
Ensembl Acc Id: ENSMUST00000152024
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl414,930,676 - 14,952,905 (+)Ensembl
GRCm38.p6 Ensembl414,930,676 - 14,952,905 (+)Ensembl
Ensembl Acc Id: ENSMUST00000246835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl414,930,671 - 14,953,031 (+)Ensembl
RefSeq Acc Id: NM_001243100   ⟹   NP_001230029
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39414,930,641 - 14,953,030 (+)NCBI
GRCm38414,930,641 - 14,953,030 (+)NCBI
Celera414,729,632 - 14,754,638 (+)ENTREZGENE
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001356579   ⟹   NP_001343508
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39414,929,908 - 14,953,030 (+)NCBI
GRCm38414,929,908 - 14,953,030 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001230029 (Get FASTA)   NCBI Sequence Viewer  
  NP_001343508 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL05602 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000159570
  ENSMUSP00000159570.1
  ENSMUSP00000159571
  ENSMUSP00000159571.1
  ENSMUSP00000159572.1
  ENSMUSP00000159573.1
RefSeq Acc Id: NP_001230029   ⟸   NM_001243100
- UniProtKB: A0A9L6KDP1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001343508   ⟸   NM_001356579
- UniProtKB: A0A9L6KDP1 (UniProtKB/TrEMBL)

Promoters
RGD ID:6882868
Promoter ID:EPDNEW_M4885
Type:multiple initiation site
Name:Gm11837_1
Description:Mus musculus predicted gene 11837 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38414,930,543 - 14,930,603EPDNEW
RGD ID:15092730
Promoter ID:EPDNEWNC_M582
Type:initiation region
Name:Gm11837_1
Description:predicted gene 11837 [Source:MGI Symbol;Acc:MGI:3702175]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38414,930,679 - 14,930,739EPDNEWNC

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3702175 AgrOrtholog
Ensembl Genes ENSMUSG00000086587 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000136992 ENTREZGENE
  ENSMUST00000136992.8 UniProtKB/TrEMBL
  ENSMUST00000137532 ENTREZGENE
  ENSMUST00000137532.9 UniProtKB/TrEMBL
  ENSMUST00000152024.2 UniProtKB/TrEMBL
  ENSMUST00000246835.1 UniProtKB/TrEMBL
MGD MGI:3702175 ENTREZGENE
NCBI Gene 100038514 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN UniProtKB/TrEMBL
  GRANULITO UniProtKB/TrEMBL
PhenoGen Gm11837 PhenoGen
UniProt A0A9L6KDP1 ENTREZGENE, UniProtKB/TrEMBL
  A0A9L6KE76_MOUSE UniProtKB/TrEMBL