Zbtb7a (zinc finger and BTB domain containing 7a)

Gene: Zbtb7a (zinc finger and BTB domain containing 7a) Rattus norvegicus

Analyze

Symbol:

Zbtb7a

Name:

zinc finger and BTB domain containing 7a

RGD ID:

620946

Description:

Enables DNA-binding transcription factor activity. Involved in regulation of DNA-templated transcription and regulation of osteoclast differentiation. Predicted to be located in cytoplasm and site of double-strand break. Predicted to be part of DNA-dependent protein kinase complex. Predicted to be active in nucleus. Orthologous to human ZBTB7A (zinc finger and BTB domain containing 7A); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

leukemia/lymphoma related factor; leukemia/lymphoma-related factor; Lrf; OCZF; osteoclast-derived zinc finger; Zbtb7; zinc finger and BTB domain-containing protein 7A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	9,211,733 - 9,229,273 (-)	NCBI		GRCr8
mRatBN7.2	7	8,561,015 - 8,578,243 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	8,563,779 - 8,576,539 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	11,448,841 - 11,461,603 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	13,324,328 - 13,337,091 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	11,190,783 - 11,203,558 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	11,429,266 - 11,446,119 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	11,432,049 - 11,444,786 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	11,596,630 - 11,613,467 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	10,047,586 - 10,060,456 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	10,047,608 - 10,052,982 (-)	NCBI
Celera	7	6,751,640 - 6,757,036 (-)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute myeloid leukemia (ISO)

amenorrhea (ISO)

genetic disease (ISO)

glioblastoma (ISO)

MACROCEPHALY, NEURODEVELOPMENTAL DELAY, LYMPHOID HYPERPLASIA, AND PERSISTENT FETAL HEMOGLOBIN (ISO)

Prostatic Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-palmitoylglycerol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenthion (ISO)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

genistein (EXP)

hydrogen cyanide (ISO)

leflunomide (ISO)

methapyrilene (ISO)

methidathion (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

potassium cyanide (ISO)

resveratrol (ISO)

succimer (ISO)

temozolomide (ISO)

thioacetamide (EXP)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

B cell differentiation (IEA,ISO,ISS)

chromatin organization (ISO)

chromatin remodeling (IEA,ISO,ISS)

DNA-templated transcription (IEA,ISO)

double-strand break repair via classical nonhomologous end joining (IEA,ISO,ISS)

erythrocyte maturation (IEA,ISO,ISS)

fat cell differentiation (IEA,ISO,ISS)

negative regulation of androgen receptor signaling pathway (IEA,ISO,ISS)

negative regulation of DNA-templated transcription (ISO,ISS)

negative regulation of Notch signaling pathway (IEA,ISO,ISS)

negative regulation of transcription by RNA polymerase II (IEA,ISO,ISS)

negative regulation of transforming growth factor beta receptor signaling pathway (IEA,ISO,ISS)

protein localization to nucleus (IEA,ISO)

regulation of alternative mRNA splicing, via spliceosome (IEA,ISO,ISS)

regulation of apoptotic process (IEA,ISO,ISS)

regulation of DNA-templated transcription (IDA)

regulation of glycolytic process (IEA,ISO,ISS)

regulation of osteoclast differentiation (IDA)

regulation of transcription by RNA polymerase II (IBA,ISO)

Cellular Component

cytoplasm (IEA,ISO)

DNA-dependent protein kinase complex (IEA,ISO)

nucleus (IBA,IEA,ISO)

site of double-strand break (IEA,ISO,ISS)

Molecular Function

DNA binding (ISO,ISS)

DNA-binding transcription factor activity (IDA,ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

DNA-binding transcription factor binding (ISO)

DNA-binding transcription repressor activity, RNA polymerase II-specific (IEA,ISO)

histone acetyltransferase binding (IEA,ISO,ISS)

metal ion binding (IEA)

nuclear androgen receptor binding (IEA,ISO,ISS)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,IEA,ISO)

sequence-specific DNA binding (ISO)

sequence-specific double-stranded DNA binding (ISO)

SMAD binding (IEA,ISO,ISS)

transcription corepressor binding (IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Osteoclast-derived zinc finger (OCZF) protein with POZ domain, a possible transcriptional repressor, is involved in osteoclastogenesis.	Kukita A, etal., Blood 1999 Sep 15;94(6):1987-97.
3.	Leukemia/lymphoma-related factor, a POZ domain-containing transcriptional repressor, interacts with histone deacetylase-1 and inhibits cartilage oligomeric matrix protein gene expression and chondrogenesis.	Liu CJ, etal., J Biol Chem. 2004 Nov 5;279(45):47081-91. Epub 2004 Aug 26.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12004059	PMID:14701838	PMID:15662416	PMID:15917220	PMID:17495164	PMID:17595526	PMID:20812024	PMID:24514149	PMID:24772825	PMID:25514493	PMID:26446488	PMID:26455326
PMID:26816381	PMID:29813070	PMID:35474350

Genomics

Comparative Map Data

Zbtb7a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	9,211,733 - 9,229,273 (-)	NCBI		GRCr8
mRatBN7.2	7	8,561,015 - 8,578,243 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	8,563,779 - 8,576,539 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	11,448,841 - 11,461,603 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	13,324,328 - 13,337,091 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	11,190,783 - 11,203,558 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	11,429,266 - 11,446,119 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	11,432,049 - 11,444,786 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	11,596,630 - 11,613,467 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	10,047,586 - 10,060,456 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	10,047,608 - 10,052,982 (-)	NCBI
Celera	7	6,751,640 - 6,757,036 (-)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

ZBTB7A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	4,043,303 - 4,066,899 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	4,043,303 - 4,066,899 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	4,043,301 - 4,066,897 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	3,996,216 - 4,017,816 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	3,996,216 - 4,017,816	NCBI
Celera	19	3,984,710 - 4,006,260 (-)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	19	3,809,524 - 3,824,110 (-)	NCBI		HuRef
CHM1_1	19	4,044,801 - 4,066,422 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	4,026,415 - 4,050,025 (-)	NCBI		T2T-CHM13v2.0

Zbtb7a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	80,971,113 - 80,988,056 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	80,971,054 - 80,988,829 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	81,135,225 - 81,152,222 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	81,135,220 - 81,152,995 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	80,599,016 - 80,614,402 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	80,539,400 - 80,554,393 (+)	NCBI		MGSCv36	mm8
Celera	10	82,156,627 - 82,172,013 (+)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

Zbtb7a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	4,740,901 - 4,753,992 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	4,747,905 - 4,754,066 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZBTB7A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	8,440,492 - 8,466,499 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	7,670,621 - 7,694,593 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	3,066,554 - 3,090,285 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	4,013,208 - 4,037,630 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

ZBTB7A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	55,517,531 - 55,527,071 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	55,505,916 - 55,523,736 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	55,233,807 - 55,252,980 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	56,169,484 - 56,187,224 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	56,166,283 - 56,182,676 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	55,224,406 - 55,243,571 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	55,705,817 - 55,724,966 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	55,904,666 - 55,923,869 (+)	NCBI		UU_Cfam_GSD_1.0

Zbtb7a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	215,512,758 - 215,525,208 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	2,311,727 - 2,321,372 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	2,310,975 - 2,321,790 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZBTB7A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	74,681,193 - 74,694,869 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	74,678,293 - 74,699,347 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	75,223,154 - 75,243,600 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZBTB7A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	3,802,171 - 3,824,552 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	3,801,046 - 3,812,884 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666081	4,418,198 - 4,441,462 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zbtb7a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	5,530,543 - 5,545,902 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	5,529,351 - 5,548,481 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Zbtb7a
30 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	117
Count of miRNA genes:	81
Interacting mature miRNAs:	94
Transcripts:	ENSRNOT00000027323
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	27829089	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	31962314	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	31962314	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34000259	Rat
2317047	Wbc4	White blood cell count QTL 4		0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	7	1	35342956	Rat
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	44782185	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1	44822433	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	664270	26029351	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
10755438	Coatc9	Coat color QTL 9		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	3529280	48529280	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	5329019	50329019	Rat
10755440	Coatc10	Coat color QTL 10		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	7496499	52496499	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	7573985	52573985	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	32	47	31	19	31	1	3	61	33	32	11	1
Low		11	10	10		10	7	8	13	2	9		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_054002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC120292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D88450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000027323 ⟹ ENSRNOP00000027323

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	8,563,799 - 8,576,539 (-)	Ensembl
Rnor_6.0 Ensembl	7	11,432,049 - 11,444,786 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000082126 ⟹ ENSRNOP00000073998

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	8,563,779 - 8,575,536 (-)	Ensembl
Rnor_6.0 Ensembl	7	11,432,049 - 11,443,357 (-)	Ensembl

RefSeq Acc Id:

NM_054002 ⟹ NP_446454

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,214,493 - 9,227,252 (-)	NCBI
mRatBN7.2	7	8,563,776 - 8,576,539 (-)	NCBI
Rnor_6.0	7	11,432,026 - 11,444,786 (-)	NCBI
Rnor_5.0	7	11,596,630 - 11,613,467 (-)	NCBI
RGSC_v3.4	7	10,047,586 - 10,060,456 (-)	RGD
Celera	7	6,751,640 - 6,757,036 (-)	RGD

Sequence:

show sequence

CGGCACGAGCCCGCCCGAGCGAGGTCCGCGCCGCGGCTGCCCCGATCGCGCGTCCTCCGGGCCC
GGGTCCCCGCGAGGTAAGCTGCCTGGGCTGAAGGGGAGCCCTCTCCCGGAGAGGTGTCGCGGAA
GATGGCTGGCGGCGTGGACGGCCCCATCGGGATCCCGTTCCCAGACCACAGCAGCGACATCCTG
AGCGGCCTGAATGAGCAGCGGACTCAGGGGCTGCTGTGTGATGTGGTGATCTTGGTGGAGGGAC
GTGAGTTCCCCACGCATCGCTCGGTGCTGGCCGCCTGCAGTCAGTACTTCAAGAAGCTGTTCAC
TTCGGGCGCTGTCGTGGACCAGCAGAACGTGTACGAGATTGACTTTGTGAGCGCCGAGGCGCTG
ACGGCGCTCATGGACTTTGCCTACACAGCCACGCTCACGGTCAGCACGGCCAATGTGGGCGACA
TCCTGAGTGCGGCCCGGCTGCTGGAGATCCCGGCCGTGAGCCGAGTGTGCACTGACCTGCTGGA
GCGCCAGATTCTTGCGGCCGACGATGTGGGGGATGCGGGCCAGCCCGATGGGGCGGGTCCCACG
GACCAGCGCAACCTGCTGCGTGCCAAGGAGTACCTGGAGTTCTTCCGCAGCAACCCCATGAATA
GCCTGCCCCCCACTGCCTTCCAGTGGCCTGGCTTCAGTGCCCCCGATGACGACCTGGATGCCAC
CAAGGAGGCAGTGGCTGCCGCTGTGGCTGCTGTGGCTGCAGGTGACTGCAATGGCTTAGACTTC
TACGGCCCAGGGCCTCCAGCTGATCGGCCCCCAACGGGCGATGGGGAGGAGGGTGACAGCACCC
CAGGGCTGTGGCCTGAGCGGGATGAAGATGCCCCGCCTGGGGGGCTCTTCCCGCCTCCTACTGC
CCCGCCAGCCACTACACAGAACGGCCACTATGGCCGTGCAGGGGCCAGCACTGGTGAGGAAGAA
GCAGTGGCGCTCTCTGAGGCCGCCCCTGAGCCGGGTGACTCCCCGGGCTTCCTGTCAGGTGCTG
CAGAAGGCGAGGATGGGGATGCCGCTGATGTGGACGGGCTAGCGGCCAGCACACTGCTACAGCA
GATGATGTCGTCCGTGGGCCGGGCAGGGGACAGTGATGAGGAGTCCCGCCCGGACGACAAGGGT
GTCATGGACTACTACCTGAAGTACTTCAGCGGAGCCCATGAGGGTGATGTGTACCCGGCCTGGT
CACAGAAGGGCGAGAAGAAAATCCGGGCCAAGGCCTTCCAGAAGTGCCCCATTTGCGAGAAGGT
GATTCAGGGCGCAGGCAAGCTGCCCCGGCACATCCGCACGCACACCGGCGAGAAGCCCTATGAG
TGCAACATCTGCAAGGTCCGCTTCACCAGACAGGACAAGCTGAAGGTGCACATGCGGAAGCACA
CGGGTGAGAAACCGTACCTGTGCCAGCAGTGCGGCGCGGCCTTCGCACACAACTACGACCTGAA
GAACCACATGCGGGTGCACACAGGGCTGCGACCGTACCAGTGTGACAGCTGCTGCAAGACCTTC
GTGCGCTCCGACCACCTGCACAGACACCTCAAGAAGGACGGCTGCAATGGGGTCCCCTCGCGCC
GTGGCCGCAAGCCCCGCGTGCGGGGTGTGCCACCTGATGTCCCCTCCGGGGCTGGCGCACCCCC
CGGGCTCCCGGATGCTCCACGCAATGGCCAGGAGAAGCACTTTAAGGACGAGGAGGACGACGAG
GAGGAGGCCAGCCTTGACGGCTTGGGCCGCCTGAATGTAGCGGGCAGTGGAGGAGACGATGGTG
CGGGTGGCCCCACGGTGGCCGCCACTGAGGGTAACTTCGCAACCTGACTCGTATTAAAACAAAC
CAAAAACAAAACAAAAAACTAAGAACAGAGAGAAACCACCACCCACCCCCAGCACCACAAGTAA
GCAGTTCTCTGTCCAGACGCCCTCCATCCATCCGCGCGGACATGTGTGCGTGTATATACCATGG
CCGCGGGCGCCTGCCTTTCTCAGATCCTTAGGATGTGGCCCCATCTGCTCCTGTGCCCCTCGCC
CCGTCCACCCAGAGGTCCCACCCAGGGGCCCAGCCTGCTCCTGCTAAGGCGAGGGCGATAGGGT
CGCCAGGACAGGCGCCCAGCTCCTTGCTGGTTGGTTTTAGGGGGTCTTAGACAGACCTTAAATG
CTCTGTCCACTATGAGTGGACGTTAAAATGGTCCCCAGCTCCCCACCCTCCTTCCTCAGGGCAC
TTACTAAAAGAGGGGGGTGTCCCCTCGGGCTCCCTCCCCGCCTGTGGCCTCACATCTCTGCACA
TCCACCATGGCCACCACTGACATACAAATCTATTTATTCCCAAGCCTGGATGGCCAGAGCGGGG
ATTTGGGGGGCTGCTGGGGTCCCTGCCACCCTCTTTCACGGCACTTAGACCTGACGGGGTCCTT
GGGGCCACTGCTCAGGGCGACCCCCCCCAACCTTCCCATCTCTGCTTGGCCATGCCCCACCCTG
TGTTCAGAGATTGAAAATTCGTCGTTACCCCGCGCCCCACTTTTTAAGGCACTTTTTAGATCTA
TTTCCCCTTTTCTCCTTAAAGACAGTTTATATAGAGATATATATAGAGAGAGATATATAAAATA
TTCTTTTCCTCAGAGGAGCCGGCAGCAGTTGTGGGTGGACGTAGCCAAGATCAGAGGTAACCCC
AGGAACTCAGGCAGAGACAGGCGAGGGAGCGAGAGAAAGGCCACAGCTTAATGTCACAAAACAG
CAATAAAACCCCAAGACTTTAGAAACACGAAAACAGAACATTAAAAAAAAAAAAAAAAAAAAAA
A

hide sequence

RefSeq Acc Id:

XM_006240836 ⟹ XP_006240898

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,211,733 - 9,226,570 (-)	NCBI
mRatBN7.2	7	8,561,015 - 8,575,859 (-)	NCBI
Rnor_6.0	7	11,429,266 - 11,444,082 (-)	NCBI
Rnor_5.0	7	11,596,630 - 11,613,467 (-)	NCBI

Sequence:

show sequence

GGTGGAGTGTGGAGTGTCTGGGAGGCGGACGCGTCTTCGCGGTTCTCCTGGGCGCTGTAGTTCT
TTTGCTTATCTTCAGTACTTGATGTTTTGGACGGTGGTCAGGGAACGTGAACTACAAATCCCAG
AGTGCCCCGCGATAGCGGCGGGTCAGGGAGGGGCGTTGCGGAGGAGGGGCGGTGAGCGGCAGAC
CAGAGAGCCAATGGATACGAGAAACAGTCCGGCGCGGCTCTGCATGGGGATGGTGCCTGCGTCT
GGGCGGAACCTGCGTTCAGGGGCGGGGTTTTGCAGGAGAGGCGGGGCTTCCGTGGCTCCCTCGC
CGGGGGCCGGTGGCGGTCCCGGCTTCCGGCTGCCGCCCCTCCCCTCCTGTTGTGTAACCGTTCC
TAGGCCCCCCCCGTTCGATATTTTAATTTTTCCCCCTTTTCCTTTAGTTCCGGACGCTCCGGGA
CGAGGAGAAAGGTTCCTCCACAAGACTGGACGTTCCCTTCCCGGGGGAGGGTGTGGTGTCAGGG
GGCTTCGGGGCTTCAGGCGAGGCCGGGGATGCGCGGCCTGGCGCGGGCCGGGCCGGGCGCGGGG
GAGGTGACGGGCGGACCCAGATCCGGGGTAATTTGCATCGCCCTCCCCCCAGCCCGGGTGGGGA
TTGGCCGGGCGGCGGCGGAGGGTGGTGCGGGGCCGGGCTCAGCGTCGCCCGCCGGGGCTCGGAG
CCACCAGCCCGCCGCAGCCATCGTCCCGGTCGCTGGCGCCCGCGCGCCGCCCGCGAAGGAGGTG
TCGCGGAAGATGGCTGGCGGCGTGGACGGCCCCATCGGGATCCCGTTCCCAGACCACAGCAGCG
ACATCCTGAGCGGCCTGAATGAGCAGCGGACTCAGGGGCTGCTGTGTGATGTGGTGATCTTGGT
GGAGGGACGTGAGTTCCCCACGCATCGCTCGGTGCTGGCCGCCTGCAGTCAGTACTTCAAGAAG
CTGTTCACTTCGGGCGCTGTCGTGGACCAGCAGAACGTGTACGAGATTGACTTTGTGAGCGCCG
AGGCGCTGACGGCGCTCATGGACTTTGCCTACACAGCCACGCTCACGGTCAGCACGGCCAATGT
GGGCGACATCCTGAGTGCGGCCCGGCTGCTGGAGATCCCGGCCGTGAGCCGAGTGTGCACTGAC
CTGCTGGAGCGCCAGATTCTTGCGGCCGACGATGTGGGGGATGCGGGCCAGCCCGATGGGGCGG
GTCCCACGGACCAGCGCAACCTGCTGCGTGCCAAGGAGTACCTGGAGTTCTTCCGCAGCAACCC
CATGAATAGCCTGCCCCCCACTGCCTTCCAGTGGCCTGGCTTCAGTGCCCCCGATGACGACCTG
GATGCCACCAAGGAGGCAGTGGCTGCCGCTGTGGCTGCTGTGGCTGCAGGTGACTGCAATGGCT
TAGACTTCTACGGCCCAGGGCCTCCAGCTGATCGGCCCCCAACGGGCGATGGGGAGGAGGGTGA
CAGCACCCCAGGGCTGTGGCCTGAGCGGGATGAAGATGCCCCGCCTGGGGGGCTCTTCCCGCCT
CCTACTGCCCCGCCAGCCACTACACAGAACGGCCACTATGGCCGTGCAGGGGCCAGCACTGGTG
AGGAAGAAGCAGTGGCGCTCTCTGAGGCCGCCCCTGAGCCGGGTGACTCCCCGGGCTTCCTGTC
AGGTGCTGCAGAAGGCGAGGATGGGGATGCCGCTGATGTGGACGGGCTAGCGGCCAGCACACTG
CTACAGCAGATGATGTCGTCCGTGGGCCGGGCAGGGGACAGTGATGAGGAGTCCCGCCCGGACG
ACAAGGGTGTCATGGACTACTACCTGAAGTACTTCAGCGGAGCCCATGAGGGTGATGTGTACCC
GGCCTGGTCACAGAAGGGCGAGAAGAAAATCCGGGCCAAGGCCTTCCAGAAGTGCCCCATTTGC
GAGAAGGTGATTCAGGGCGCAGGCAAGCTGCCCCGGCACATCCGCACGCACACCGGCGAGAAGC
CCTATGAGTGCAACATCTGCAAGGTCCGCTTCACCAGACAGGACAAGCTGAAGGTGCACATGCG
GAAGCACACGGGTGAGAAACCGTACCTGTGCCAGCAGTGCGGCGCGGCCTTCGCACACAACTAC
GACCTGAAGAACCACATGCGGGTGCACACAGGGCTGCGACCGTACCAGTGTGACAGCTGCTGCA
AGACCTTCGTGCGCTCCGACCACCTGCACAGACACCTCAAGAAGGACGGCTGCAATGGAGTCCC
CTCGCGCCGTGGCCGCAAGCCCCGCGTGCGGGGTGTGCCACCTGATGTCCCCTCCGGGGCTGGC
GCACCCCCCGGGCTCCCGGATGCTCCACGCAATGGCCAGGAGAAGCACTTTAAGGACGAGGAGG
AGGACGAGGAGGAGGCCAGCCCTGACGGCTTGGGCCGCCTGAATGTAGCGGGCAGTGGAGGAGA
CGATGGTGCGGGTGGCCCCACGGTGGCCGCCACTGAGGGTAACTTCGCAACCTGACTCGTATTA
AAACAAACCAAAAACAAAACAAAAAACTAAGAACAGAGAGAAACCACCACCCACCCCCAGCACC
ACAAGTAAGCAGTTCTCTGTCCAGACGCCCTCCATCCATCCGCGCGGACATGTGTGCGTGTATA
TACCATGGCCGCGGGCGCCTGCCTTTCTCAGATCCTTAGGATGTGGCCCCATCTGCTCCTGTGC
CCCTCGCCCCGTCCACCCAGAGGTCCCACCCAGGGGCCCAGCCTGCTCCTGCTAAGGCGAGGGC
GATAGGGTCGCCAGGACAGGCGCCCAGCTCCTTGCTGGTTGGTTTTAGGGGGTCTTAGACAGAC
CTTAAATGCTCTGTCCACTATGAGTGGACGTTAAAATGGTCCCCAGCTCCCCACCCTCCTTCCT
CAGGGCACTTACTAAAAGAGGGGGGTGTCCCCTCGGGCTCCCTCCCCGCCTGTGGCCTCACATC
TCTGCACATCCACCATGGCCACCACTGACATACAAATCTATTTATTCCCAAGCCTGGATGGCCA
GAGCGGGGATTTGGGGGGCTGCTGGGGTCCCTGCCACCCTCTTTCACGGCACTTAGACCTGACG
GGGTCCTTGGGGCCACTGCTCAGGGCGACCCCCCCCAACCTTCCCATCTCTGCTTGGCCATGCC
CCACCCTGTGTTCAGAGATTGAAAATTCGTCGTTACCCCGCGCCCCACTTTTTAAGGCACTTTT
TAGATCTATTTCCCCTTTTCTCCTTAAAGACAGTTTATATAGAGATATATATAGAGAGAGATAT
ATAAAATATTCTTTTCCTCAGAGGAGCCGGCAGCAGTTGTGGGTGGACGTAGCCAAGATCAGAG
GTAACCCCAGGAACTCAGGCAGAGACAGGCGAGGGAGCGAGAGAAAGGCCACAGCTTAATGTCA
CAAAACAGCAATAAAACCCCAAGACTTTAGAAACACGAAAACAGAACATTAAAAAAAAAAAAAA
AAAAAAAAAAAAGGGCAAAAGCGGCGACGGCCATGTGGGGATCTTGGCACTTTGTAACTGAACG
GGTACTTTTCATTCTTAACTTAAGAAATGTTTACAAGTTGCACCCAGCTTCTATGAAAAATTGG
AGAGAGGGAGAGCAGTGGGAAGTAACTAAGTCAATTTATTTTTGTATAAAATAAAAGAACCCCA
ACCCATTGCTCCGGTAGAATCCGCTTGCGTTCCCAAGACTCAGGGCGGGGCGTCCAGGGCGCCA
CGGGAAGGGACCCGGGTCCGCTTGGCCTGCCTCCGGGGCTCCCTGAGTCTGCCAGGGGCCCCTG
TTTCCCAGGTTATTTTAATTTTCTCTCTGTAGGAGACCACAGGCCTGGGAGCCGCAGGCCACCT
GTCCTGTCCTTCCCAGCTCAGGGATGTCCCCGAGAGAGGGCTGGTCCTCGGCTAGCCAGACCCC
GTGCCCCCGTGTGGTTCCCCCTCCCCGTGTGGTGGTCCCCTTCCTAGGCACCCCCTCTTTTTAT
TCAAAGGCACTGACTGTAACCCAGGGGCTAGCACCTGAGCCCCCCACACTCTAAACTCTGGCTT
CCCCAAAAGGCTCGGTGTTGACTGAGCCACAGGCCACGGACAGGGGTTGGGGTTGGGGGACATG
GGTGCCAGCACACCCCCATGTCAAACCTTGTGGCCAAGGTAGAACCAAACTTGGGACCTTGTCC
ATGTATACTCTGCCGAGCCCTTTCCAGTGCATGCCGGCGGGGTAGAGGGTCCTGTGTCCCCATC
TGACAAATGTTTCTTTGGTTTTAAAGGGAAGCTCTTTCAGAAGGCCTCTTTCCAGTTTCTAGCA
GAGGGGTTTTCCTTTCTAACCCCGTCTACTGCGCGACACCCCCCCCCCCCCGATGTCTCAGGAT
CCCCCCTTGGGGCCAGCAGAATGGGCCCAGGGGCGGGGTGGTGCTGGCCTCCCCTTGCACCCTA
CTTTCGCACTGAGCTGTCCTGGGAACTGCTGTGGAGGCCAAGTTGGTCCCCAGTCCCCCATTCT
CAGACAGGTCAGCCCCTCCATCCTCTCGCAATAAAACCAACTTTAATCACATGTCATCCTGGCC
AGCGGCCACTAGTCTTGGGGTGGATGGAGCCCTTGGGGACTATGGTAGGGCGTCCCGTAGCCCG
CCAGCGACACCGCAGATCCCTTAGGGATTGCACTAAACCCTTGCCCCTCACTCTGCACCCAGCT
TCTGCCCACCCACACCCACCTTGCCTTAACCGCCAGCCCGTCCCTAGGGGGCCGCAGCCACAGC
ATGGGCCCAGCGCCGGGACATCCCCAGCCCCCTAAAGGCCCTCCCCAAACCCCCCCCATATACT
GCAATCACATACTGTATATAGAATGTGGATCGATTTTTACAAATTTTTATTCTTTAAATTAAGG
CCGTGATAAAAGTTGCCAAAGAGAATTGTGGAATTCACTAGAGGTTTGAGCAGAGGGTGCTATA
GAAAGGTTTTATTTGGTTGTTTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTCCCCTTTTTTTTTTTTTTTAAACTGCCTGGTACCAATAACAAAAAGAAAAAGAAGAGAAAT
TTGTTACTTCCATTATGGTGAATTTGCGTGTGTGTGAGTGTGTGAGACAGAAGGGCCCAGGCTG
TGGGGTTCTGGGGACCCCAGTGCTGGGGAGGTGACCAGCCTGCAGCTGGCACCAGCCTGTGACC
TGAACAAGGCCACCCCTGCTGAGTAGTTGCTGCTCTTTGCCTTCCTGTCCCTACAGGCCTTTGG
AGATTAAGAAAAAAAAAAAAAAAAAGGCAAAAAAATAAAAAAATATAAAAATAAAAATAAAAAG
CAAAACCCTATATATCTACAGAAACCAATGAATGTAAACGGCAGAGCAGGCCCCGCCATGCTGG
GCTCCAGTGGTAGAACCAAAGTGGGTGCCCTGGGGTGCTCATTTAGGAGGACCCCCGAGTGGCC
ACCACCCTGTCACCCTTTTGAGCACAGCTGACCCGAGGGTGCTCTGGTGGGTCCCCTTGGGTAG
CCAGGGAATGCTGCCGCTGTGGCAGGCACAATGGCAGCCTGGAAGTCCAGGCGGAAACTGGGCT
GGTCGTTCAGGGGAAGGCAGTGTGAGTAGCAGGGTGTGTAGGAGGGACACAGGCTGAAAGGAAA
AATAGAAAAAAACAAAAAAACCACAAAAACCAACAAAAAAAGAAAAAGCAAAATCCTATTTTTT
GAGAAAGAAAGATATTTATATTTGCAGTTTTATTTTAAAAAGTTATTTAAGCTGAGGAAACAGC
CTTCCCGGAGGTGGGGGTGGCTGGCACCGGACGGGTCAGGGGTCTTGGGGGGCTCCTCACCCCA
GAAATGATTATCTCAGTTCAGAACTAGCTCGCACTAAATATATACTGATTTACCTTTGTGGGGG
GGCAGGGAGGCCAAGAGACAGAGGGCCAGGGGAATCCCACCCCAAGCCCAGAACGAGGTGCCTT
GGAATTTGGGGCCCCAGGCCTGGTGCATGGGGGTCCAGAGCACAGAACAGACATTCCACTGACC
GGATGTAAGAATCTTTATAAAAAGTGTGGGAGGCAGAACGAAAACAAATCAACTGATTAAAGAA
AAATGCACTTTTTGGGGGTGGGGGGACAAGCTTTAAAAGTAATTAAAAAACAACAAAAGATTAT
GAAAAATCCGAAAAAATAGAATTCATTTTTCTTGTACATAAAAGAGAAAAACCCAACCACTAAA
TGCAGCCTGTTACGATA

hide sequence

RefSeq Acc Id:

XM_006240837 ⟹ XP_006240899

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,211,733 - 9,228,134 (-)	NCBI
mRatBN7.2	7	8,561,015 - 8,576,978 (-)	NCBI
Rnor_6.0	7	11,429,266 - 11,445,233 (-)	NCBI
Rnor_5.0	7	11,596,630 - 11,613,467 (-)	NCBI

Sequence:

show sequence

GGCCGGGGCTGTTTATCTGCGGCCCCCACCCCCTGCACCCGAGGGGCCCCTCTTGCCCGCCCCC
AGCACCCCGGGGTGCTCTGGGCCGTAGATAAGCCAGCAGGCTGGCACGGCGCCGCGCACGGGGC
GGAGAGGTCACGGGCTTGCCAGGGGAGGGGCCGATGGGTCGGGGCTGCGCCCCCCGCCCGCCCG
GCACCCCCAAATCCCTAATTGCAGCCCGATCTGTTCTCCCGGCGCAGCCCCGCGGGACGTGGCA
AGAGCCGACCTGCAGAGCCTGTTCTGGCCGCGGTGGCCGGGGGGGCGGGCTGGGCGTGGGGGTG
CCGGCGCTGCGGCACCTTTAAGACGAGGGAGGACCCCTCTTGCCCTCGGACAAACCAGGAAGGG
AGTCGCGAGCATCATACGGGGCTTTGCGTACTGTACGGCTACTGTAGGGGCAGTGACGCCGCCG
CCCGCCCGAGCGAGGTCCGCGCCGCGGGCTGCCCCGATCGCGCGTCCTCCGGGCCCGGGTCCCC
GCGAGGTGTCGCGGAAGATGGCTGGCGGCGTGGACGGCCCCATCGGGATCCCGTTCCCAGACCA
CAGCAGCGACATCCTGAGCGGCCTGAATGAGCAGCGGACTCAGGGGCTGCTGTGTGATGTGGTG
ATCTTGGTGGAGGGACGTGAGTTCCCCACGCATCGCTCGGTGCTGGCCGCCTGCAGTCAGTACT
TCAAGAAGCTGTTCACTTCGGGCGCTGTCGTGGACCAGCAGAACGTGTACGAGATTGACTTTGT
GAGCGCCGAGGCGCTGACGGCGCTCATGGACTTTGCCTACACAGCCACGCTCACGGTCAGCACG
GCCAATGTGGGCGACATCCTGAGTGCGGCCCGGCTGCTGGAGATCCCGGCCGTGAGCCGAGTGT
GCACTGACCTGCTGGAGCGCCAGATTCTTGCGGCCGACGATGTGGGGGATGCGGGCCAGCCCGA
TGGGGCGGGTCCCACGGACCAGCGCAACCTGCTGCGTGCCAAGGAGTACCTGGAGTTCTTCCGC
AGCAACCCCATGAATAGCCTGCCCCCCACTGCCTTCCAGTGGCCTGGCTTCAGTGCCCCCGATG
ACGACCTGGATGCCACCAAGGAGGCAGTGGCTGCCGCTGTGGCTGCTGTGGCTGCAGGTGACTG
CAATGGCTTAGACTTCTACGGCCCAGGGCCTCCAGCTGATCGGCCCCCAACGGGCGATGGGGAG
GAGGGTGACAGCACCCCAGGGCTGTGGCCTGAGCGGGATGAAGATGCCCCGCCTGGGGGGCTCT
TCCCGCCTCCTACTGCCCCGCCAGCCACTACACAGAACGGCCACTATGGCCGTGCAGGGGCCAG
CACTGGTGAGGAAGAAGCAGTGGCGCTCTCTGAGGCCGCCCCTGAGCCGGGTGACTCCCCGGGC
TTCCTGTCAGGTGCTGCAGAAGGCGAGGATGGGGATGCCGCTGATGTGGACGGGCTAGCGGCCA
GCACACTGCTACAGCAGATGATGTCGTCCGTGGGCCGGGCAGGGGACAGTGATGAGGAGTCCCG
CCCGGACGACAAGGGTGTCATGGACTACTACCTGAAGTACTTCAGCGGAGCCCATGAGGGTGAT
GTGTACCCGGCCTGGTCACAGAAGGGCGAGAAGAAAATCCGGGCCAAGGCCTTCCAGAAGTGCC
CCATTTGCGAGAAGGTGATTCAGGGCGCAGGCAAGCTGCCCCGGCACATCCGCACGCACACCGG
CGAGAAGCCCTATGAGTGCAACATCTGCAAGGTCCGCTTCACCAGACAGGACAAGCTGAAGGTG
CACATGCGGAAGCACACGGGTGAGAAACCGTACCTGTGCCAGCAGTGCGGCGCGGCCTTCGCAC
ACAACTACGACCTGAAGAACCACATGCGGGTGCACACAGGGCTGCGACCGTACCAGTGTGACAG
CTGCTGCAAGACCTTCGTGCGCTCCGACCACCTGCACAGACACCTCAAGAAGGACGGCTGCAAT
GGAGTCCCCTCGCGCCGTGGCCGCAAGCCCCGCGTGCGGGGTGTGCCACCTGATGTCCCCTCCG
GGGCTGGCGCACCCCCCGGGCTCCCGGATGCTCCACGCAATGGCCAGGAGAAGCACTTTAAGGA
CGAGGAGGAGGACGAGGAGGAGGCCAGCCCTGACGGCTTGGGCCGCCTGAATGTAGCGGGCAGT
GGAGGAGACGATGGTGCGGGTGGCCCCACGGTGGCCGCCACTGAGGGTAACTTCGCAACCTGAC
TCGTATTAAAACAAACCAAAAACAAAACAAAAAACTAAGAACAGAGAGAAACCACCACCCACCC
CCAGCACCACAAGTAAGCAGTTCTCTGTCCAGACGCCCTCCATCCATCCGCGCGGACATGTGTG
CGTGTATATACCATGGCCGCGGGCGCCTGCCTTTCTCAGATCCTTAGGATGTGGCCCCATCTGC
TCCTGTGCCCCTCGCCCCGTCCACCCAGAGGTCCCACCCAGGGGCCCAGCCTGCTCCTGCTAAG
GCGAGGGCGATAGGGTCGCCAGGACAGGCGCCCAGCTCCTTGCTGGTTGGTTTTAGGGGGTCTT
AGACAGACCTTAAATGCTCTGTCCACTATGAGTGGACGTTAAAATGGTCCCCAGCTCCCCACCC
TCCTTCCTCAGGGCACTTACTAAAAGAGGGGGGTGTCCCCTCGGGCTCCCTCCCCGCCTGTGGC
CTCACATCTCTGCACATCCACCATGGCCACCACTGACATACAAATCTATTTATTCCCAAGCCTG
GATGGCCAGAGCGGGGATTTGGGGGGCTGCTGGGGTCCCTGCCACCCTCTTTCACGGCACTTAG
ACCTGACGGGGTCCTTGGGGCCACTGCTCAGGGCGACCCCCCCCAACCTTCCCATCTCTGCTTG
GCCATGCCCCACCCTGTGTTCAGAGATTGAAAATTCGTCGTTACCCCGCGCCCCACTTTTTAAG
GCACTTTTTAGATCTATTTCCCCTTTTCTCCTTAAAGACAGTTTATATAGAGATATATATAGAG
AGAGATATATAAAATATTCTTTTCCTCAGAGGAGCCGGCAGCAGTTGTGGGTGGACGTAGCCAA
GATCAGAGGTAACCCCAGGAACTCAGGCAGAGACAGGCGAGGGAGCGAGAGAAAGGCCACAGCT
TAATGTCACAAAACAGCAATAAAACCCCAAGACTTTAGAAACACGAAAACAGAACATTAAAAAA
AAAAAAAAAAAAAAAAAAAAGGGCAAAAGCGGCGACGGCCATGTGGGGATCTTGGCACTTTGTA
ACTGAACGGGTACTTTTCATTCTTAACTTAAGAAATGTTTACAAGTTGCACCCAGCTTCTATGA
AAAATTGGAGAGAGGGAGAGCAGTGGGAAGTAACTAAGTCAATTTATTTTTGTATAAAATAAAA
GAACCCCAACCCATTGCTCCGGTAGAATCCGCTTGCGTTCCCAAGACTCAGGGCGGGGCGTCCA
GGGCGCCACGGGAAGGGACCCGGGTCCGCTTGGCCTGCCTCCGGGGCTCCCTGAGTCTGCCAGG
GGCCCCTGTTTCCCAGGTTATTTTAATTTTCTCTCTGTAGGAGACCACAGGCCTGGGAGCCGCA
GGCCACCTGTCCTGTCCTTCCCAGCTCAGGGATGTCCCCGAGAGAGGGCTGGTCCTCGGCTAGC
CAGACCCCGTGCCCCCGTGTGGTTCCCCCTCCCCGTGTGGTGGTCCCCTTCCTAGGCACCCCCT
CTTTTTATTCAAAGGCACTGACTGTAACCCAGGGGCTAGCACCTGAGCCCCCCACACTCTAAAC
TCTGGCTTCCCCAAAAGGCTCGGTGTTGACTGAGCCACAGGCCACGGACAGGGGTTGGGGTTGG
GGGACATGGGTGCCAGCACACCCCCATGTCAAACCTTGTGGCCAAGGTAGAACCAAACTTGGGA
CCTTGTCCATGTATACTCTGCCGAGCCCTTTCCAGTGCATGCCGGCGGGGTAGAGGGTCCTGTG
TCCCCATCTGACAAATGTTTCTTTGGTTTTAAAGGGAAGCTCTTTCAGAAGGCCTCTTTCCAGT
TTCTAGCAGAGGGGTTTTCCTTTCTAACCCCGTCTACTGCGCGACACCCCCCCCCCCCCGATGT
CTCAGGATCCCCCCTTGGGGCCAGCAGAATGGGCCCAGGGGCGGGGTGGTGCTGGCCTCCCCTT
GCACCCTACTTTCGCACTGAGCTGTCCTGGGAACTGCTGTGGAGGCCAAGTTGGTCCCCAGTCC
CCCATTCTCAGACAGGTCAGCCCCTCCATCCTCTCGCAATAAAACCAACTTTAATCACATGTCA
TCCTGGCCAGCGGCCACTAGTCTTGGGGTGGATGGAGCCCTTGGGGACTATGGTAGGGCGTCCC
GTAGCCCGCCAGCGACACCGCAGATCCCTTAGGGATTGCACTAAACCCTTGCCCCTCACTCTGC
ACCCAGCTTCTGCCCACCCACACCCACCTTGCCTTAACCGCCAGCCCGTCCCTAGGGGGCCGCA
GCCACAGCATGGGCCCAGCGCCGGGACATCCCCAGCCCCCTAAAGGCCCTCCCCAAACCCCCCC
CATATACTGCAATCACATACTGTATATAGAATGTGGATCGATTTTTACAAATTTTTATTCTTTA
AATTAAGGCCGTGATAAAAGTTGCCAAAGAGAATTGTGGAATTCACTAGAGGTTTGAGCAGAGG
GTGCTATAGAAAGGTTTTATTTGGTTGTTTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTCCCCTTTTTTTTTTTTTTTAAACTGCCTGGTACCAATAACAAAAAGAAAAAGA
AGAGAAATTTGTTACTTCCATTATGGTGAATTTGCGTGTGTGTGAGTGTGTGAGACAGAAGGGC
CCAGGCTGTGGGGTTCTGGGGACCCCAGTGCTGGGGAGGTGACCAGCCTGCAGCTGGCACCAGC
CTGTGACCTGAACAAGGCCACCCCTGCTGAGTAGTTGCTGCTCTTTGCCTTCCTGTCCCTACAG
GCCTTTGGAGATTAAGAAAAAAAAAAAAAAAAAGGCAAAAAAATAAAAAAATATAAAAATAAAA
ATAAAAAGCAAAACCCTATATATCTACAGAAACCAATGAATGTAAACGGCAGAGCAGGCCCCGC
CATGCTGGGCTCCAGTGGTAGAACCAAAGTGGGTGCCCTGGGGTGCTCATTTAGGAGGACCCCC
GAGTGGCCACCACCCTGTCACCCTTTTGAGCACAGCTGACCCGAGGGTGCTCTGGTGGGTCCCC
TTGGGTAGCCAGGGAATGCTGCCGCTGTGGCAGGCACAATGGCAGCCTGGAAGTCCAGGCGGAA
ACTGGGCTGGTCGTTCAGGGGAAGGCAGTGTGAGTAGCAGGGTGTGTAGGAGGGACACAGGCTG
AAAGGAAAAATAGAAAAAAACAAAAAAACCACAAAAACCAACAAAAAAAGAAAAAGCAAAATCC
TATTTTTTGAGAAAGAAAGATATTTATATTTGCAGTTTTATTTTAAAAAGTTATTTAAGCTGAG
GAAACAGCCTTCCCGGAGGTGGGGGTGGCTGGCACCGGACGGGTCAGGGGTCTTGGGGGGCTCC
TCACCCCAGAAATGATTATCTCAGTTCAGAACTAGCTCGCACTAAATATATACTGATTTACCTT
TGTGGGGGGGCAGGGAGGCCAAGAGACAGAGGGCCAGGGGAATCCCACCCCAAGCCCAGAACGA
GGTGCCTTGGAATTTGGGGCCCCAGGCCTGGTGCATGGGGGTCCAGAGCACAGAACAGACATTC
CACTGACCGGATGTAAGAATCTTTATAAAAAGTGTGGGAGGCAGAACGAAAACAAATCAACTGA
TTAAAGAAAAATGCACTTTTTGGGGGTGGGGGGACAAGCTTTAAAAGTAATTAAAAAACAACAA
AAGATTATGAAAAATCCGAAAAAATAGAATTCATTTTTCTTGTACATAAAAGAGAAAAACCCAA
CCACTAAATGCAGCCTGTTACGATA

hide sequence

RefSeq Acc Id:

XM_006240838 ⟹ XP_006240900

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,211,733 - 9,229,273 (-)	NCBI
mRatBN7.2	7	8,561,015 - 8,578,243 (-)	NCBI
Rnor_6.0	7	11,429,266 - 11,446,119 (-)	NCBI
Rnor_5.0	7	11,596,630 - 11,613,467 (-)	NCBI

Sequence:

show sequence

AAGGAAAACAAAAGCCGTTGGGTTGCTCCGCACTTTCCCACTCCCCACCTCCGTCCTGCCCGGC
GCGGCGCCCCTGCGAGGGTCCCGGTCTACGCCCCACACCAGCCGGGCCAGTCAGCCGGCTGCAG
GGAAAATTACAAGGCCTGGAAAACAACCGTCCTTCCCCGCCCCTCGCCAACCCCTTCCCCGCGC
TACGCCCCTGGCACAGCCGGGTGGAGGCGACTGTTTTATGTAATCGCGGGGCGGCAGGTTTGCT
GGCTGGCTGTACCGGTGAGGGCGGGACCCCCGAGCTCAGCTGACACCTCGCGGCCCTGCAAGTC
TCCCCCTCGGGGGTCCCCGGTGTCGCGGAAGATGGCTGGCGGCGTGGACGGCCCCATCGGGATC
CCGTTCCCAGACCACAGCAGCGACATCCTGAGCGGCCTGAATGAGCAGCGGACTCAGGGGCTGC
TGTGTGATGTGGTGATCTTGGTGGAGGGACGTGAGTTCCCCACGCATCGCTCGGTGCTGGCCGC
CTGCAGTCAGTACTTCAAGAAGCTGTTCACTTCGGGCGCTGTCGTGGACCAGCAGAACGTGTAC
GAGATTGACTTTGTGAGCGCCGAGGCGCTGACGGCGCTCATGGACTTTGCCTACACAGCCACGC
TCACGGTCAGCACGGCCAATGTGGGCGACATCCTGAGTGCGGCCCGGCTGCTGGAGATCCCGGC
CGTGAGCCGAGTGTGCACTGACCTGCTGGAGCGCCAGATTCTTGCGGCCGACGATGTGGGGGAT
GCGGGCCAGCCCGATGGGGCGGGTCCCACGGACCAGCGCAACCTGCTGCGTGCCAAGGAGTACC
TGGAGTTCTTCCGCAGCAACCCCATGAATAGCCTGCCCCCCACTGCCTTCCAGTGGCCTGGCTT
CAGTGCCCCCGATGACGACCTGGATGCCACCAAGGAGGCAGTGGCTGCCGCTGTGGCTGCTGTG
GCTGCAGGTGACTGCAATGGCTTAGACTTCTACGGCCCAGGGCCTCCAGCTGATCGGCCCCCAA
CGGGCGATGGGGAGGAGGGTGACAGCACCCCAGGGCTGTGGCCTGAGCGGGATGAAGATGCCCC
GCCTGGGGGGCTCTTCCCGCCTCCTACTGCCCCGCCAGCCACTACACAGAACGGCCACTATGGC
CGTGCAGGGGCCAGCACTGGTGAGGAAGAAGCAGTGGCGCTCTCTGAGGCCGCCCCTGAGCCGG
GTGACTCCCCGGGCTTCCTGTCAGGTGCTGCAGAAGGCGAGGATGGGGATGCCGCTGATGTGGA
CGGGCTAGCGGCCAGCACACTGCTACAGCAGATGATGTCGTCCGTGGGCCGGGCAGGGGACAGT
GATGAGGAGTCCCGCCCGGACGACAAGGGTGTCATGGACTACTACCTGAAGTACTTCAGCGGAG
CCCATGAGGGTGATGTGTACCCGGCCTGGTCACAGAAGGGCGAGAAGAAAATCCGGGCCAAGGC
CTTCCAGAAGTGCCCCATTTGCGAGAAGGTGATTCAGGGCGCAGGCAAGCTGCCCCGGCACATC
CGCACGCACACCGGCGAGAAGCCCTATGAGTGCAACATCTGCAAGGTCCGCTTCACCAGACAGG
ACAAGCTGAAGGTGCACATGCGGAAGCACACGGGTGAGAAACCGTACCTGTGCCAGCAGTGCGG
CGCGGCCTTCGCACACAACTACGACCTGAAGAACCACATGCGGGTGCACACAGGGCTGCGACCG
TACCAGTGTGACAGCTGCTGCAAGACCTTCGTGCGCTCCGACCACCTGCACAGACACCTCAAGA
AGGACGGCTGCAATGGAGTCCCCTCGCGCCGTGGCCGCAAGCCCCGCGTGCGGGGTGTGCCACC
TGATGTCCCCTCCGGGGCTGGCGCACCCCCCGGGCTCCCGGATGCTCCACGCAATGGCCAGGAG
AAGCACTTTAAGGACGAGGAGGAGGACGAGGAGGAGGCCAGCCCTGACGGCTTGGGCCGCCTGA
ATGTAGCGGGCAGTGGAGGAGACGATGGTGCGGGTGGCCCCACGGTGGCCGCCACTGAGGGTAA
CTTCGCAACCTGACTCGTATTAAAACAAACCAAAAACAAAACAAAAAACTAAGAACAGAGAGAA
ACCACCACCCACCCCCAGCACCACAAGTAAGCAGTTCTCTGTCCAGACGCCCTCCATCCATCCG
CGCGGACATGTGTGCGTGTATATACCATGGCCGCGGGCGCCTGCCTTTCTCAGATCCTTAGGAT
GTGGCCCCATCTGCTCCTGTGCCCCTCGCCCCGTCCACCCAGAGGTCCCACCCAGGGGCCCAGC
CTGCTCCTGCTAAGGCGAGGGCGATAGGGTCGCCAGGACAGGCGCCCAGCTCCTTGCTGGTTGG
TTTTAGGGGGTCTTAGACAGACCTTAAATGCTCTGTCCACTATGAGTGGACGTTAAAATGGTCC
CCAGCTCCCCACCCTCCTTCCTCAGGGCACTTACTAAAAGAGGGGGGTGTCCCCTCGGGCTCCC
TCCCCGCCTGTGGCCTCACATCTCTGCACATCCACCATGGCCACCACTGACATACAAATCTATT
TATTCCCAAGCCTGGATGGCCAGAGCGGGGATTTGGGGGGCTGCTGGGGTCCCTGCCACCCTCT
TTCACGGCACTTAGACCTGACGGGGTCCTTGGGGCCACTGCTCAGGGCGACCCCCCCCAACCTT
CCCATCTCTGCTTGGCCATGCCCCACCCTGTGTTCAGAGATTGAAAATTCGTCGTTACCCCGCG
CCCCACTTTTTAAGGCACTTTTTAGATCTATTTCCCCTTTTCTCCTTAAAGACAGTTTATATAG
AGATATATATAGAGAGAGATATATAAAATATTCTTTTCCTCAGAGGAGCCGGCAGCAGTTGTGG
GTGGACGTAGCCAAGATCAGAGGTAACCCCAGGAACTCAGGCAGAGACAGGCGAGGGAGCGAGA
GAAAGGCCACAGCTTAATGTCACAAAACAGCAATAAAACCCCAAGACTTTAGAAACACGAAAAC
AGAACATTAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCAAAAGCGGCGACGGCCATGTGGGGAT
CTTGGCACTTTGTAACTGAACGGGTACTTTTCATTCTTAACTTAAGAAATGTTTACAAGTTGCA
CCCAGCTTCTATGAAAAATTGGAGAGAGGGAGAGCAGTGGGAAGTAACTAAGTCAATTTATTTT
TGTATAAAATAAAAGAACCCCAACCCATTGCTCCGGTAGAATCCGCTTGCGTTCCCAAGACTCA
GGGCGGGGCGTCCAGGGCGCCACGGGAAGGGACCCGGGTCCGCTTGGCCTGCCTCCGGGGCTCC
CTGAGTCTGCCAGGGGCCCCTGTTTCCCAGGTTATTTTAATTTTCTCTCTGTAGGAGACCACAG
GCCTGGGAGCCGCAGGCCACCTGTCCTGTCCTTCCCAGCTCAGGGATGTCCCCGAGAGAGGGCT
GGTCCTCGGCTAGCCAGACCCCGTGCCCCCGTGTGGTTCCCCCTCCCCGTGTGGTGGTCCCCTT
CCTAGGCACCCCCTCTTTTTATTCAAAGGCACTGACTGTAACCCAGGGGCTAGCACCTGAGCCC
CCCACACTCTAAACTCTGGCTTCCCCAAAAGGCTCGGTGTTGACTGAGCCACAGGCCACGGACA
GGGGTTGGGGTTGGGGGACATGGGTGCCAGCACACCCCCATGTCAAACCTTGTGGCCAAGGTAG
AACCAAACTTGGGACCTTGTCCATGTATACTCTGCCGAGCCCTTTCCAGTGCATGCCGGCGGGG
TAGAGGGTCCTGTGTCCCCATCTGACAAATGTTTCTTTGGTTTTAAAGGGAAGCTCTTTCAGAA
GGCCTCTTTCCAGTTTCTAGCAGAGGGGTTTTCCTTTCTAACCCCGTCTACTGCGCGACACCCC
CCCCCCCCCGATGTCTCAGGATCCCCCCTTGGGGCCAGCAGAATGGGCCCAGGGGCGGGGTGGT
GCTGGCCTCCCCTTGCACCCTACTTTCGCACTGAGCTGTCCTGGGAACTGCTGTGGAGGCCAAG
TTGGTCCCCAGTCCCCCATTCTCAGACAGGTCAGCCCCTCCATCCTCTCGCAATAAAACCAACT
TTAATCACATGTCATCCTGGCCAGCGGCCACTAGTCTTGGGGTGGATGGAGCCCTTGGGGACTA
TGGTAGGGCGTCCCGTAGCCCGCCAGCGACACCGCAGATCCCTTAGGGATTGCACTAAACCCTT
GCCCCTCACTCTGCACCCAGCTTCTGCCCACCCACACCCACCTTGCCTTAACCGCCAGCCCGTC
CCTAGGGGGCCGCAGCCACAGCATGGGCCCAGCGCCGGGACATCCCCAGCCCCCTAAAGGCCCT
CCCCAAACCCCCCCCATATACTGCAATCACATACTGTATATAGAATGTGGATCGATTTTTACAA
ATTTTTATTCTTTAAATTAAGGCCGTGATAAAAGTTGCCAAAGAGAATTGTGGAATTCACTAGA
GGTTTGAGCAGAGGGTGCTATAGAAAGGTTTTATTTGGTTGTTTGGGGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTCCCCTTTTTTTTTTTTTTTAAACTGCCTGGTACCAATAA
CAAAAAGAAAAAGAAGAGAAATTTGTTACTTCCATTATGGTGAATTTGCGTGTGTGTGAGTGTG
TGAGACAGAAGGGCCCAGGCTGTGGGGTTCTGGGGACCCCAGTGCTGGGGAGGTGACCAGCCTG
CAGCTGGCACCAGCCTGTGACCTGAACAAGGCCACCCCTGCTGAGTAGTTGCTGCTCTTTGCCT
TCCTGTCCCTACAGGCCTTTGGAGATTAAGAAAAAAAAAAAAAAAAAGGCAAAAAAATAAAAAA
ATATAAAAATAAAAATAAAAAGCAAAACCCTATATATCTACAGAAACCAATGAATGTAAACGGC
AGAGCAGGCCCCGCCATGCTGGGCTCCAGTGGTAGAACCAAAGTGGGTGCCCTGGGGTGCTCAT
TTAGGAGGACCCCCGAGTGGCCACCACCCTGTCACCCTTTTGAGCACAGCTGACCCGAGGGTGC
TCTGGTGGGTCCCCTTGGGTAGCCAGGGAATGCTGCCGCTGTGGCAGGCACAATGGCAGCCTGG
AAGTCCAGGCGGAAACTGGGCTGGTCGTTCAGGGGAAGGCAGTGTGAGTAGCAGGGTGTGTAGG
AGGGACACAGGCTGAAAGGAAAAATAGAAAAAAACAAAAAAACCACAAAAACCAACAAAAAAAG
AAAAAGCAAAATCCTATTTTTTGAGAAAGAAAGATATTTATATTTGCAGTTTTATTTTAAAAAG
TTATTTAAGCTGAGGAAACAGCCTTCCCGGAGGTGGGGGTGGCTGGCACCGGACGGGTCAGGGG
TCTTGGGGGGCTCCTCACCCCAGAAATGATTATCTCAGTTCAGAACTAGCTCGCACTAAATATA
TACTGATTTACCTTTGTGGGGGGGCAGGGAGGCCAAGAGACAGAGGGCCAGGGGAATCCCACCC
CAAGCCCAGAACGAGGTGCCTTGGAATTTGGGGCCCCAGGCCTGGTGCATGGGGGTCCAGAGCA
CAGAACAGACATTCCACTGACCGGATGTAAGAATCTTTATAAAAAGTGTGGGAGGCAGAACGAA
AACAAATCAACTGATTAAAGAAAAATGCACTTTTTGGGGGTGGGGGGACAAGCTTTAAAAGTAA
TTAAAAAACAACAAAAGATTATGAAAAATCCGAAAAAATAGAATTCATTTTTCTTGTACATAAA
AGAGAAAAACCCAACCACTAAATGCAGCCTGTTACGATA

hide sequence

RefSeq Acc Id:

XM_063262898 ⟹ XP_063118968

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,211,733 - 9,226,898 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_446454	(Get FASTA)	NCBI Sequence Viewer
	XP_006240898	(Get FASTA)	NCBI Sequence Viewer
	XP_006240899	(Get FASTA)	NCBI Sequence Viewer
	XP_006240900	(Get FASTA)	NCBI Sequence Viewer
	XP_063118968	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAA86393	(Get FASTA)	NCBI Sequence Viewer
	EDL89190	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000027323
	ENSRNOP00000027323.3
	ENSRNOP00000073998
	ENSRNOP00000073998.2
GenBank Protein	Q9QZ48	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_446454 ⟸ NM_054002

- UniProtKB:

Q9QZ48 (UniProtKB/Swiss-Prot), G3V8P6 (UniProtKB/TrEMBL), A6K8C0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGGVDGPIGIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFT
SGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSRVCTDLLE
RQILAADDVGDAGQPDGAGPTDQRNLLRAKEYLEFFRSNPMNSLPPTAFQWPGFSAPDDDLDAT
KEAVAAAVAAVAAGDCNGLDFYGPGPPADRPPTGDGEEGDSTPGLWPERDEDAPPGGLFPPPTA
PPATTQNGHYGRAGASTGEEEAVALSEAAPEPGDSPGFLSGAAEGEDGDAADVDGLAASTLLQQ
MMSSVGRAGDSDEESRPDDKGVMDYYLKYFSGAHEGDVYPAWSQKGEKKIRAKAFQKCPICEKV
IQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQCGAAFAHNYDLK
NHMRVHTGLRPYQCDSCCKTFVRSDHLHRHLKKDGCNGVPSRRGRKPRVRGVPPDVPSGAGAPP
GLPDAPRNGQEKHFKDEEDDEEEASLDGLGRLNVAGSGGDDGAGGPTVAATEGNFAT

hide sequence

RefSeq Acc Id:	XP_006240900 ⟸ XM_006240838
- Peptide Label:	isoform X2
- UniProtKB:	Q9QZ48 (UniProtKB/Swiss-Prot), G3V8P6 (UniProtKB/TrEMBL), A6K8C0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGGVDGPIGIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFT SGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSRVCTDLLE RQILAADDVGDAGQPDGAGPTDQRNLLRAKEYLEFFRSNPMNSLPPTAFQWPGFSAPDDDLDAT KEAVAAAVAAVAAGDCNGLDFYGPGPPADRPPTGDGEEGDSTPGLWPERDEDAPPGGLFPPPTA PPATTQNGHYGRAGASTGEEEAVALSEAAPEPGDSPGFLSGAAEGEDGDAADVDGLAASTLLQQ MMSSVGRAGDSDEESRPDDKGVMDYYLKYFSGAHEGDVYPAWSQKGEKKIRAKAFQKCPICEKV IQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQCGAAFAHNYDLK NHMRVHTGLRPYQCDSCCKTFVRSDHLHRHLKKDGCNGVPSRRGRKPRVRGVPPDVPSGAGAPP GLPDAPRNGQEKHFKDEEEDEEEASPDGLGRLNVAGSGGDDGAGGPTVAATEGNFAT hide sequence

RefSeq Acc Id:	XP_006240899 ⟸ XM_006240837
- Peptide Label:	isoform X2
- UniProtKB:	Q9QZ48 (UniProtKB/Swiss-Prot), G3V8P6 (UniProtKB/TrEMBL), A6K8C0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGGVDGPIGIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFT SGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSRVCTDLLE RQILAADDVGDAGQPDGAGPTDQRNLLRAKEYLEFFRSNPMNSLPPTAFQWPGFSAPDDDLDAT KEAVAAAVAAVAAGDCNGLDFYGPGPPADRPPTGDGEEGDSTPGLWPERDEDAPPGGLFPPPTA PPATTQNGHYGRAGASTGEEEAVALSEAAPEPGDSPGFLSGAAEGEDGDAADVDGLAASTLLQQ MMSSVGRAGDSDEESRPDDKGVMDYYLKYFSGAHEGDVYPAWSQKGEKKIRAKAFQKCPICEKV IQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYLCQQCGAAFAHNYDLK NHMRVHTGLRPYQCDSCCKTFVRSDHLHRHLKKDGCNGVPSRRGRKPRVRGVPPDVPSGAGAPP GLPDAPRNGQEKHFKDEEEDEEEASPDGLGRLNVAGSGGDDGAGGPTVAATEGNFAT hide sequence

RefSeq Acc Id:	XP_006240898 ⟸ XM_006240836
- Peptide Label:	isoform X1
- UniProtKB:	Q9QZ48 (UniProtKB/Swiss-Prot), A0A0G2K6Z3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRGLARAGPGAGEVTGGPRSGVICIALPPARVGIGRAAAEGGAGPGSASPAGARSHQPAAAIVP VAGARAPPAKEVSRKMAGGVDGPIGIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHR SVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARL LEIPAVSRVCTDLLERQILAADDVGDAGQPDGAGPTDQRNLLRAKEYLEFFRSNPMNSLPPTAF QWPGFSAPDDDLDATKEAVAAAVAAVAAGDCNGLDFYGPGPPADRPPTGDGEEGDSTPGLWPER DEDAPPGGLFPPPTAPPATTQNGHYGRAGASTGEEEAVALSEAAPEPGDSPGFLSGAAEGEDGD AADVDGLAASTLLQQMMSSVGRAGDSDEESRPDDKGVMDYYLKYFSGAHEGDVYPAWSQKGEKK IRAKAFQKCPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTRQDKLKVHMRKHTGEKPYL CQQCGAAFAHNYDLKNHMRVHTGLRPYQCDSCCKTFVRSDHLHRHLKKDGCNGVPSRRGRKPRV RGVPPDVPSGAGAPPGLPDAPRNGQEKHFKDEEEDEEEASPDGLGRLNVAGSGGDDGAGGPTVA ATEGNFAT hide sequence

RefSeq Acc Id:

ENSRNOP00000073998 ⟸ ENSRNOT00000082126

RefSeq Acc Id:

ENSRNOP00000027323 ⟸ ENSRNOT00000027323

RefSeq Acc Id:	XP_063118968 ⟸ XM_063262898
- Peptide Label:	isoform X2
- UniProtKB:	A6K8C0 (UniProtKB/TrEMBL), G3V8P6 (UniProtKB/TrEMBL)

Protein Domains

BTB C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9QZ48-F1-model_v2	AlphaFold	Q9QZ48	1-569	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694997

Promoter ID:

EPDNEW_R5512

Type:

single initiation site

Name:

Zbtb7a_2

Description:

zinc finger and BTB domain containing 7a

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R5513

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	11,443,373 - 11,443,433	EPDNEW

RGD ID:

13694988

Promoter ID:

EPDNEW_R5513

Type:

initiation region

Name:

Zbtb7a_1

Description:

zinc finger and BTB domain containing 7a

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R5512

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	11,444,798 - 11,444,858	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620946	AgrOrtholog
BioCyc Gene	G2FUF-34997	BioCyc
Ensembl Genes	ENSRNOG00000020161	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000027323	ENTREZGENE
	ENSRNOT00000027323.6	UniProtKB/TrEMBL
	ENSRNOT00000082126.2	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	BTB/POZ_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SKP1/BTB/POZ_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:117107	UniProtKB/Swiss-Prot
NCBI Gene	117107	ENTREZGENE
PANTHER	AGAP004733-PA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 7A	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	BTB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Zbtb7a	PhenoGen
PROSITE	BTB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000020161	RatGTEx
SMART	BTB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF54695	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF57667	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K6Z3	ENTREZGENE, UniProtKB/TrEMBL
	A6K8C0	ENTREZGENE, UniProtKB/TrEMBL
	G3V8P6	ENTREZGENE, UniProtKB/TrEMBL
	Q9QZ48	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Description	Reference	Status
2005-11-17	Zbtb7a	zinc finger and BTB domain containing 7a		Symbol and Name updated	1299863	APPROVED
2004-09-10	Zbtb7	leukemia/lymphoma related factor	Lrf	Symbol and Name updated	1299863	APPROVED
2002-08-07	Lrf	leukemia/lymphoma related factor		Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains an N-terminal POZ domain and C-terminal Kruppel-like zinc fingers	633299
gene_expression	expressed in osteoclasts and kidney cells	633299

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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