LOC120099053 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120099053 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120099053
Name: U6 spliceosomal RNA
RGD ID: 41206442
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: U6
RGD Orthologs
Human
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82013,044,233 - 13,044,331 (+)NCBIGRCr8
mRatBN7.22013,044,794 - 13,044,892 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2013,044,794 - 13,044,892 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl2013,044,794 - 13,044,892 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl2013,989,983 - 13,990,081 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120099053
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82013,044,233 - 13,044,331 (+)NCBIGRCr8
mRatBN7.22013,044,794 - 13,044,892 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2013,044,794 - 13,044,892 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl2013,044,794 - 13,044,892 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl2013,989,983 - 13,990,081 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map20p12NCBI
RNU6-79P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381372,881,108 - 72,881,214 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1372,881,108 - 72,881,214 (-)EnsemblGRCh38hg38GRCh38
GRCh371373,455,246 - 73,455,352 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map13q22.1NCBI
HuRef1354,152,502 - 54,152,608 (-)NCBIHuRef
CHM1_11373,422,901 - 73,423,007 (-)NCBICHM1_1
T2T-CHM13v2.01372,102,596 - 72,102,702 (-)NCBIT2T-CHM13v2.0
LOC119873061
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha843,090,604 - 43,090,711 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0843,631,303 - 43,631,410 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl843,631,303 - 43,631,410 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1843,245,869 - 43,245,976 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0843,319,578 - 43,319,685 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0843,679,320 - 43,679,427 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in LOC120099053
6 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20460660717617956Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20669170617489458Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
1581577Pur15Proteinuria QTL 154.380.0002urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)20804241017617956Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126123605Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat
631265Iresp1Immunoglobin response QTL18.3blood anti-double stranded DNA antibody amount (VT:0004762)serum anti-DNA antibody level (CMO:0001533)20903971913461775Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000085676
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2013,044,794 - 13,044,892 (+)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-4151 BioCyc
Ensembl Genes ENSRNOG00000053255 Ensembl
NCBI Gene LOC120099053 ENTREZGENE
PhenoGen LOC120099053 PhenoGen
RatGTEx ENSRNOG00000053255 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120099053  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15007775 737654 PROVISIONAL
2021-01-27 LOC120099053  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL