Rnu6-826 (RNA, U6 small nuclear 826) - Rat Genome Database

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Gene: Rnu6-826 (RNA, U6 small nuclear 826) Rattus norvegicus
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Symbol: Rnu6-826 (Ensembl: U6)
Name: RNA, U6 small nuclear 826 (Ensembl:U6 spliceosomal RNA)
RGD ID: 40980061
Description: Predicted to enable U4 snRNA binding activity. Predicted to be involved in formation of quadruple SL/U4/U5/U6 snRNP and spliceosomal tri-snRNP complex assembly. Predicted to be part of U4/U6 x U5 tri-snRNP complex and U6 snRNP. Orthologous to human RNU6-826P (RNA, U6 small nuclear 826, pseudogene).
Type: snrna
RefSeq Status: MODEL
Previously known as: LOC120100141; U6 spliceosomal RNA
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,595,792 - 94,595,898 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl194,595,792 - 94,595,898 (-)EnsemblGRCr8
mRatBN7.2185,468,325 - 85,468,431 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,468,325 - 85,468,431 (-)EnsemblmRatBN7.2
Cytogenetic Map1q21NCBI
JBrowse:




References

Genomics

Comparative Map Data
Rnu6-826
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,595,792 - 94,595,898 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl194,595,792 - 94,595,898 (-)EnsemblGRCr8
mRatBN7.2185,468,325 - 85,468,431 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,468,325 - 85,468,431 (-)EnsemblmRatBN7.2
Cytogenetic Map1q21NCBI
RNU6-826P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381749,036,352 - 49,036,449 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1749,036,352 - 49,036,455 (+)Ensemblhg38GRCh38
GRCh371747,113,714 - 47,113,811 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17q21.32NCBI
CHM1_11747,178,925 - 47,179,022 (+)NCBICHM1_1
T2T-CHM13v2.01749,899,708 - 49,899,805 (+)NCBIT2T-CHM13v2.0


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)192963855109494029Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat


Expression

RNA-SEQ Expression

mesenchyme
renal system
6 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005499934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000109542
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl185,468,325 - 85,468,431 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000157688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl194,595,792 - 94,595,898 (-)Ensembl
RefSeq Acc Id: XR_005499934
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8194,595,792 - 94,595,898 (-)NCBI
mRatBN7.2185,468,325 - 85,468,431 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:40980061 AgrOrtholog
BioCyc Gene G2FUF-60137 BioCyc
Ensembl Genes ENSRNOG00000063644 Ensembl
  ENSRNOG00000078502 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000157688 ENTREZGENE
NCBI Gene LOC120100141 ENTREZGENE
PhenoGen Rnu6-826 PhenoGen
RatGTEx ENSRNOG00000063644 RatGTEx
  ENSRNOG00000078502 RatGTEx
RNAcentral URS00006C7CF4 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-08 Rnu6-826  RNA, U6 small nuclear 826  LOC120100141  U6 spliceosomal RNA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2021-01-26 LOC120100141  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL