Gene: RNU6-826P (RNA, U6 small nuclear 826, pseudogene) Homo sapiens |
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Analyze |
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Symbol: |
RNU6-826P |
Name: |
RNA, U6 small nuclear 826, pseudogene |
RGD ID: |
10413140 |
HGNC Page |
HGNC:47789 |
Description: |
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Type: |
pseudo (Ensembl: snRNA)
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RefSeq Status: |
INFERRED |
RGD Orthologs |
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Alliance Orthologs |
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More Info |
more info ...
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More Info |
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Related Functional Gene: |
RNU6-1
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Latest Assembly: |
GRCh38 - Human Genome Assembly GRCh38 |
Position: |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 17 | 49,036,352 - 49,036,449 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 17 | 49,036,352 - 49,036,455 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 17 | 47,113,714 - 47,113,811 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 17 | q21.32 | NCBI | | | | | CHM1_1 | 17 | 47,178,925 - 47,179,022 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 17 | 49,899,708 - 49,899,805 (+) | NCBI | | T2T-CHM13v2.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
Comparative Map Data
RNU6-826P (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 17 | 49,036,352 - 49,036,449 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 17 | 49,036,352 - 49,036,455 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 17 | 47,113,714 - 47,113,811 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 17 | q21.32 | NCBI | | | | | CHM1_1 | 17 | 47,178,925 - 47,179,022 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 17 | 49,899,708 - 49,899,805 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Gm23941 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 3 | 159,621,892 - 159,621,998 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 3 | 159,621,892 - 159,621,998 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 3 | 159,916,255 - 159,916,361 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 3 | 159,916,255 - 159,916,361 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | Cytogenetic Map | 3 | H4 | NCBI | | | | |
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Rnu6-826 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 1 | 94,595,792 - 94,595,898 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 1 | 85,468,325 - 85,468,431 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 1 | 85,468,325 - 85,468,431 (-) | Ensembl | | mRatBN7.2 Ensembl | | | Cytogenetic Map | 1 | q21 | NCBI | | | | |
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LOC119865515 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Dog10K_Boxer_Tasha | 13 | 8,084,712 - 8,084,818 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 13 | 8,404,687 - 8,404,793 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 13 | 8,404,687 - 8,404,793 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 13 | 8,161,365 - 8,161,471 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 13 | 8,279,224 - 8,279,330 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 13 | 8,356,510 - 8,356,616 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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miRNA Target Status
Predicted Target Of
Count of predictions: | 109 | Count of miRNA genes: | 109 | Interacting mature miRNAs: | 109 | Transcripts: | ENST00000516827 | Prediction methods: | Miranda, Rnahybrid | Result types: | miRGate_prediction | |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
hepatobiliary system |
integumental system |
musculoskeletal system |
nervous system |
renal system |
reproductive system |
respiratory system |
sensory system |
adipose tissue |
appendage |
entire extraembryonic component |
High |
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Medium |
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3
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13
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6
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1
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Low |
35
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15
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47
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35
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99
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38
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137
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20
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40
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35
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98
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57
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3
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2
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4
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3
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Below cutoff |
28
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31
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12
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5
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15
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6
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47
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38
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19
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11
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48
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11
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12
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28
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Sequence
RefSeq Acc Id: |
ENST00000516827 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38.p14 Ensembl | 17 | 49,036,352 - 49,036,455 (+) | Ensembl |
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Additional Information
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