Mir342 (microRNA 342) - Rat Genome Database

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Gene: Mir342 (microRNA 342) Rattus norvegicus
Analyze
Symbol: Mir342
Name: microRNA 342
RGD ID: 2325615
Description: Predicted to enable mRNA base-pairing translational repressor activity. Predicted to be involved in several processes, including miRNA-mediated gene silencing by mRNA destabilization; negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis; and negative regulation of signal transduction. Predicted to act upstream of or within several processes, including cellular response to leukemia inhibitory factor; cellular response to lipid; and long-term synaptic potentiation. Predicted to be located in extracellular exosome. Predicted to be part of RISC complex. Orthologous to human MIR342 (microRNA 342); INTERACTS WITH atrazine; bleomycin A2; cisplatin.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: rno-mir-342
RGD Orthologs
Human
Mouse
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86133,329,655 - 133,329,753 (+)NCBIGRCr8
mRatBN7.26127,565,269 - 127,565,367 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6127,565,269 - 127,565,367 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6127,689,383 - 127,689,481 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06127,984,442 - 127,984,540 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06127,342,548 - 127,342,646 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06132,561,169 - 132,561,267 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6132,561,169 - 132,561,267 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06141,731,245 - 141,731,343 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera6125,120,277 - 125,120,375 (+)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Potentiality of a triple microRNA classifier: miR-193a-3p, miR-23a and miR-338-5p for early detection of colorectal cancer. Yong FL, etal., BMC Cancer. 2013 Jun 8;13:280. doi: 10.1186/1471-2407-13-280.
Additional References at PubMed
PMID:14691248   PMID:15345052   PMID:16381832   PMID:16766679   PMID:17604727   PMID:18762567   PMID:20403161   PMID:20439489   PMID:20548288   PMID:21247879   PMID:21993888   PMID:23185045  
PMID:23646144   PMID:25751060   PMID:25858512   PMID:35364125   PMID:36271980  


Genomics

Comparative Map Data
Mir342
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86133,329,655 - 133,329,753 (+)NCBIGRCr8
mRatBN7.26127,565,269 - 127,565,367 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6127,565,269 - 127,565,367 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6127,689,383 - 127,689,481 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06127,984,442 - 127,984,540 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06127,342,548 - 127,342,646 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06132,561,169 - 132,561,267 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6132,561,169 - 132,561,267 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06141,731,245 - 141,731,343 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera6125,120,277 - 125,120,375 (+)NCBICelera
Cytogenetic Map6q32NCBI
MIR342
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814100,109,655 - 100,109,753 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14100,109,655 - 100,109,753 (+)EnsemblGRCh38hg38GRCh38
GRCh3714100,575,992 - 100,576,090 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361499,645,744 - 99,645,842 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map14q32.2NCBI
HuRef1480,758,182 - 80,758,280 (+)NCBIHuRef
CHM1_114100,513,730 - 100,513,828 (+)NCBICHM1_1
T2T-CHM13v2.01494,342,703 - 94,342,801 (+)NCBIT2T-CHM13v2.0
Mir342
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912108,624,879 - 108,624,977 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12108,624,879 - 108,624,977 (+)EnsemblGRCm39 Ensembl
GRCm3812108,658,620 - 108,658,718 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12108,658,620 - 108,658,718 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712109,896,830 - 109,896,928 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera12109,894,801 - 109,894,899 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1259.46NCBI
MIR342
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1868,424,656 - 68,424,718 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha867,945,921 - 67,945,983 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0868,710,010 - 68,710,072 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl868,710,010 - 68,710,072 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1868,372,074 - 68,372,136 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0868,437,401 - 68,437,463 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0868,835,077 - 68,835,139 (+)NCBIUU_Cfam_GSD_1.0
MIR342
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7121,021,761 - 121,021,840 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17121,021,761 - 121,021,840 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Kcnj16rno-miR-342-3pMirtarbaseexternal_infoMicroarrayFunctional MTI (Weak)18258830

Predicted Targets
Summary Value
Count of predictions:23252
Count of gene targets:11000
Count of transcripts:12078
Interacting mature miRNAs:rno-miR-342-3p, rno-miR-342-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6104085867128713626Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6116506292130245370Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)6122549046137801795Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6125628133137801795Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7 15 2
Low 10 11 4 4 4 3 3 22 9 13 8 3
Below cutoff 1 4 4 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_031786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000053735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6127,565,269 - 127,565,367 (+)Ensembl
Rnor_6.0 Ensembl6132,561,169 - 132,561,267 (+)Ensembl
RefSeq Acc Id: NR_031786
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86133,329,655 - 133,329,753 (+)NCBI
mRatBN7.26127,565,269 - 127,565,367 (+)NCBI
Rnor_6.06132,561,169 - 132,561,267 (+)NCBI
Rnor_5.06141,731,245 - 141,731,343 (+)NCBI
Celera6125,120,277 - 125,120,375 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2325615 AgrOrtholog
BioCyc Gene G2FUF-36288 BioCyc
Ensembl Genes ENSRNOG00000035612 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000053735 ENTREZGENE
miRBase MI0000626 ENTREZGENE
NCBI Gene 100313980 ENTREZGENE
PhenoGen Mir342 PhenoGen
RatGTEx ENSRNOG00000035612 RatGTEx
RNAcentral URS0000148B91 RNACentral
  URS00003345F0 RNACentral
  URS00006D63BB RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-04-09 Mir342  microRNA 342  Mir342  microRNA mir-342  Name updated 61478 APPROVED
2010-06-02 Mir342  microRNA mir-342      Symbol and Name status set to provisional 70820 PROVISIONAL