Mir342 (microRNA 342) - Rat Genome Database
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Gene: Mir342 (microRNA 342) Mus musculus
Analyze
Symbol: Mir342
Name: microRNA 342
RGD ID: 1607612
MGI Page MGI
Description: Involved in several processes, including cellular response to leukemia inhibitory factor; cellular response to lipid; and long-term synaptic potentiation. Localizes to RISC complex. Is expressed in gut; lung; and pancreas. Orthologous to human MIR342 (microRNA 342).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: Mirn; Mirn342; mmu-mir-3; mmu-mir-342
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912108,624,879 - 108,624,977 (+)NCBIGRCm39mm39
GRCm39 Ensembl12108,624,879 - 108,624,977 (+)Ensembl
GRCm3812108,658,620 - 108,658,718 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12108,658,620 - 108,658,718 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712109,896,830 - 109,896,928 (+)NCBIGRCm37mm9NCBIm37
Celera12109,894,801 - 109,894,899 (+)NCBICelera
Cytogenetic Map12F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
RISC complex  (IDA)

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14691248   PMID:15310658   PMID:16381832   PMID:17369397   PMID:17604727   PMID:17936263   PMID:18452032   PMID:18762567   PMID:19559694   PMID:20215419   PMID:20413612   PMID:20439489  
PMID:20548288   PMID:20589883   PMID:21247879   PMID:21267068   PMID:21822254   PMID:21993888   PMID:23185045   PMID:23513069   PMID:23646144   PMID:24440716   PMID:25751060   PMID:25858512  
PMID:26857067   PMID:26938778   PMID:27623927   PMID:28344005   PMID:28990109   PMID:29398686   PMID:29852165   PMID:30347114   PMID:30362546   PMID:30638935   PMID:32488063  


Genomics

Comparative Map Data
Mir342
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912108,624,879 - 108,624,977 (+)NCBIGRCm39mm39
GRCm39 Ensembl12108,624,879 - 108,624,977 (+)Ensembl
GRCm3812108,658,620 - 108,658,718 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12108,658,620 - 108,658,718 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712109,896,830 - 109,896,928 (+)NCBIGRCm37mm9NCBIm37
Celera12109,894,801 - 109,894,899 (+)NCBICelera
Cytogenetic Map12F1NCBI
MIR342
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl14100,109,655 - 100,109,753 (+)EnsemblGRCh38hg38GRCh38
GRCh3814100,109,655 - 100,109,753 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3714100,575,992 - 100,576,090 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361499,645,744 - 99,645,842 (+)NCBINCBI36hg18NCBI36
Cytogenetic Map14q32.2NCBI
HuRef1480,758,182 - 80,758,280 (+)NCBIHuRef
CHM1_114100,513,730 - 100,513,828 (+)NCBICHM1_1
Mir342
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26127,565,269 - 127,565,367 (+)NCBI
Rnor_6.0 Ensembl6132,561,169 - 132,561,267 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.06132,561,169 - 132,561,267 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06141,731,245 - 141,731,343 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera6125,120,277 - 125,120,375 (+)NCBICelera
Cytogenetic Map6q32NCBI
MIR342
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1868,424,656 - 68,424,718 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha867,945,921 - 67,945,983 (+)NCBI
ROS_Cfam_1.0868,710,010 - 68,710,072 (+)NCBI
UMICH_Zoey_3.1868,372,074 - 68,372,136 (+)NCBI
UNSW_CanFamBas_1.0868,437,401 - 68,437,463 (+)NCBI
UU_Cfam_GSD_1.0868,835,077 - 68,835,139 (+)NCBI
MIR342
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7121,021,761 - 121,021,840 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17121,021,761 - 121,021,840 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235235497109969809Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268300000113400000Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277545446111545446Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80909934113419913Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80909934113419913Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80909934113419913Mouse
1357701Lvrq10_mliver weight QTL 10 (mouse)Not determined1280909934113419913Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280909934113419913Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1281022884115022884Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282700137116700137Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283565816117565965Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283565816117565965Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285995320119995424Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286349301114868033Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288086615120129022Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288086615120129022Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288342095120129022Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289697812120129022Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289972772120129022Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290342009120129022Mouse
12910790Pwgrq7_mpre-weaning growth rate QTL 7 (mouse)1290970593108679049Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291256256120129022Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292783591120129022Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292783591120129022Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292969663120129022Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293298027120129022Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294179630120129022Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296896717120129022Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296896717120129022Mouse
10412075Nils1_mneointima lesion size 1 (mouse)Not determined12102060930120129022Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Dnmt1mmu-miR-342-3pOncomiRDBexternal_infoNANA21565830

Predicted Targets
Summary Value
Count of predictions:37414
Count of gene targets:14993
Count of transcripts:28120
Interacting mature miRNAs:mmu-miR-342-3p, mmu-miR-342-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_029771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC139568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000083502
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl12108,658,620 - 108,658,718 (+)Ensembl
RefSeq Acc Id: NR_029771
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912108,624,879 - 108,624,977 (+)NCBI
GRCm3812108,658,620 - 108,658,718 (+)ENTREZGENE
MGSCv3712109,896,830 - 109,896,928 (+)RGD
Celera12109,894,801 - 109,894,899 (+)RGD
cM Map12 ENTREZGENE
Sequence:
Promoters
RGD ID:8679210
Promoter ID:EPDNEW_M17636
Type:multiple initiation site
Name:Mir342_1
Description:Mus musculus microRNA 342 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3812108,658,706 - 108,658,766EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3619358 AgrOrtholog
Ensembl Genes ENSMUSG00000065436 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083502 ENTREZGENE
MGD MGI:3619358 ENTREZGENE
miRBase MI0000627 ENTREZGENE
NCBI Gene 723909 ENTREZGENE
PhenoGen Mir342 PhenoGen
RNAcentral URS0000148B91 RNACentral
  URS00003345F0 RNACentral
  URS00006D63BB RNACentral