Mir99b (microRNA 99b) - Rat Genome Database

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Pathways
Gene: Mir99b (microRNA 99b) Rattus norvegicus
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Symbol: Mir99b
Name: microRNA 99b
RGD ID: 2325431
Description: Predicted to enable mRNA 3'-UTR binding activity and mRNA base-pairing post-transcriptional repressor activity. Predicted to be involved in miRNA-mediated post-transcriptional gene silencing; positive regulation of angiogenesis; and positive regulation of endothelial cell differentiation. Predicted to act upstream of or within sensory perception of sound. Predicted to be part of RISC complex. Orthologous to human MIR99B (microRNA 99b); INTERACTS WITH bisphenol A; bleomycin A2; cisplatin.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA mir-99b; rno-mir-99b
RGD Orthologs
Human
Mouse
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8167,350,064 - 67,350,133 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl167,350,060 - 67,350,139 (+)EnsemblGRCr8
mRatBN7.2158,677,015 - 58,677,084 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl158,677,011 - 58,677,090 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx163,501,603 - 63,501,672 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0172,194,267 - 72,194,336 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0165,411,649 - 65,411,718 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd166,844,560 - 66,844,629 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive171,113,021 - 71,113,090 (+)NCBILyon_Normotensive
Lyon_Hypertensive168,829,087 - 68,829,156 (+)NCBILyon_Hypertensive
F344_StmMcwi165,600,891 - 65,600,960 (+)NCBIF344_StmMcwi
Rnor_6.0159,704,216 - 59,704,285 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl159,704,216 - 59,704,285 (+)Ensemblrn6Rnor6.0
Rnor_5.0160,623,874 - 60,623,943 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera154,857,973 - 54,858,042 (+)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14691248   PMID:15345052   PMID:16381832   PMID:16766679   PMID:17604727   PMID:20403161   PMID:23646144   PMID:26208845   PMID:37088748   PMID:38061116  


Genomics

Comparative Map Data
Mir99b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8167,350,064 - 67,350,133 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl167,350,060 - 67,350,139 (+)EnsemblGRCr8
mRatBN7.2158,677,015 - 58,677,084 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl158,677,011 - 58,677,090 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx163,501,603 - 63,501,672 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0172,194,267 - 72,194,336 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0165,411,649 - 65,411,718 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd166,844,560 - 66,844,629 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive171,113,021 - 71,113,090 (+)NCBILyon_Normotensive
Lyon_Hypertensive168,829,087 - 68,829,156 (+)NCBILyon_Hypertensive
F344_StmMcwi165,600,891 - 65,600,960 (+)NCBIF344_StmMcwi
Rnor_6.0159,704,216 - 59,704,285 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl159,704,216 - 59,704,285 (+)Ensemblrn6Rnor6.0
Rnor_5.0160,623,874 - 60,623,943 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera154,857,973 - 54,858,042 (+)NCBICelera
Cytogenetic Map1q12NCBI
MIR99B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381951,692,612 - 51,692,681 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1951,692,612 - 51,692,681 (+)Ensemblhg38GRCh38
GRCh371952,195,865 - 52,195,934 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361956,887,676 - 56,887,745 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1949,245,400 - 49,245,469 (+)NCBICelera
Cytogenetic Map19q13.41NCBI
HuRef1948,526,806 - 48,526,875 (+)NCBIHuRef
CHM1_11952,197,662 - 52,197,731 (+)NCBICHM1_1
T2T-CHM13v2.01954,779,775 - 54,779,844 (+)NCBIT2T-CHM13v2.0
Mir99b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391718,050,450 - 18,050,519 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1718,050,450 - 18,050,519 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381717,830,188 - 17,830,257 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1717,830,188 - 17,830,257 (+)Ensemblmm10GRCm38
MGSCv371717,967,152 - 17,967,221 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
Celera1718,770,839 - 18,770,908 (+)NCBICelera
Cytogenetic Map17A3.2NCBI
cM Map1710.5NCBI
MIR99B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11105,400,925 - 105,400,984 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1105,400,925 - 105,400,984 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1104,974,438 - 104,974,497 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01105,910,842 - 105,910,901 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1105,910,842 - 105,910,901 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11105,583,074 - 105,583,133 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01105,224,190 - 105,224,249 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01106,018,965 - 106,019,024 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
MIR99B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl658,332,205 - 58,332,284 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1658,332,211 - 58,332,280 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2651,858,217 - 51,858,286 (+)NCBISscrofa10.2Sscrofa10.2susScr3

miRNA Target Status (No longer updated)

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Aqp4rno-miR-99b-5pMirtarbaseexternal_infoMicroarrayFunctional MTI (Weak)18258830

Predicted Targets
Summary Value
Count of predictions:3573
Count of gene targets:2707
Count of transcripts:2853
Interacting mature miRNAs:rno-miR-99b-3p, rno-miR-99b-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12940927974409279Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
1 4 18 36 13 15 2 10 2 53 36 29 11 27 13

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_031857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000053777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl167,350,060 - 67,350,139 (+)Ensembl
mRatBN7.2 Ensembl158,677,011 - 58,677,090 (+)Ensembl
Rnor_6.0 Ensembl159,704,216 - 59,704,285 (+)Ensembl
RefSeq Acc Id: NR_031857
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8167,350,064 - 67,350,133 (+)NCBI
mRatBN7.2158,677,015 - 58,677,084 (+)NCBI
Dahl_SR_JrHsd166,844,560 - 66,844,629 (+)NCBI
Lyon_Normotensive171,113,021 - 71,113,090 (+)NCBI
Lyon_Hypertensive168,829,087 - 68,829,156 (+)NCBI
F344_StmMcwi165,600,891 - 65,600,960 (+)NCBI
Rnor_6.0159,704,216 - 59,704,285 (+)NCBI
Rnor_5.0160,623,874 - 60,623,943 (+)NCBI
Celera154,857,973 - 54,858,042 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2325431 AgrOrtholog
BioCyc Gene G2FUF-61264 BioCyc
Ensembl Genes ENSRNOG00000035654 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000053777 ENTREZGENE
miRBase MI0000884 ENTREZGENE
NCBI Gene 100314189 ENTREZGENE
PhenoGen Mir99b PhenoGen
RatGTEx ENSRNOG00000035654 RatGTEx
RNAcentral URS00001C308D RNACentral
  URS00002C10B3 RNACentral
  URS000075E904 RNACentral
  URS0000D4F352 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-14 Mir99b  microRNA 99b  Mir99b  microRNA mir-99b  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-06-02 Mir99b  microRNA mir-99b      Symbol and Name status set to provisional 70820 PROVISIONAL