Spetex2l2 (Spetex-2 protein like 2) - Rat Genome Database

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Gene: Spetex2l2 (Spetex-2 protein like 2) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Spetex2l2 (Ensembl: LOC134480310)
Name: Spetex-2 protein like 2 (Ensembl:uncharacterized LOC134480310)
RGD ID: 2321302
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07066700.1; hypothetical LOC363433; hypothetical protein LOC100360856; hypothetical protein LOC100360963; LOC100360856; LOC100360963; LOC100361155; LOC363433; LOC501089; LOC690576; LOC691633; rCG43589-like; similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg); similar to hypothetical protein LOC363306; uncharacterized protein LOC100360856; uncharacterized protein Spetex2l2
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr893,183,357 - 3,253,392 (+)NCBIGRCr8
mRatBN7.292,907,664 - 2,916,404 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl92,849,456 - 2,916,360 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.098,624,791 - 8,632,955 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl912,472,372 - 12,588,253 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.097,646,701 - 7,656,630 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.495,502,592 - 5,512,136 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera95,723,613 - 5,733,600 (-)NCBICelera
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Spetex2l2
940 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
631533Iresp3Immunoglobin response QTL316.2blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)927457995857951Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat

Markers in Region
AU048118  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.292,911,827 - 2,912,073 (+)MAPPERmRatBN7.2
Rnor_6.098,628,362 - 8,628,619NCBIRnor6.0
Rnor_5.097,650,778 - 7,651,035UniSTSRnor5.0
RH136957  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.292,907,681 - 2,907,895 (+)MAPPERmRatBN7.2
Rnor_6.01494,598,680 - 94,598,896NCBIRnor6.0
Rnor_6.098,624,303 - 8,624,516NCBIRnor6.0
Rnor_5.01494,393,724 - 94,393,940UniSTSRnor5.0
Rnor_5.097,646,719 - 7,646,932UniSTSRnor5.0
Cytogenetic Map4q22UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000050485   ⟹   ENSRNOP00000039060
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl92,849,465 - 2,886,722 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000072533   ⟹   ENSRNOP00000065132
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl92,907,664 - 2,916,360 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000075578   ⟹   ENSRNOP00000067276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl92,849,456 - 2,916,360 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079703   ⟹   ENSRNOP00000074663
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl92,881,694 - 2,884,702 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095705   ⟹   ENSRNOP00000086580
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl92,881,694 - 2,890,145 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101947   ⟹   ENSRNOP00000084428
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl92,881,694 - 2,886,551 (-)Ensembl
RefSeq Acc Id: XM_006244279   ⟹   XP_006244341
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr893,183,661 - 3,192,713 (+)NCBI
mRatBN7.292,907,664 - 2,916,333 (-)NCBI
Rnor_6.098,624,791 - 8,632,955 (-)NCBI
Rnor_5.097,646,701 - 7,656,630 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039084378   ⟹   XP_038940306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr893,183,663 - 3,192,713 (+)NCBI
mRatBN7.292,907,664 - 2,916,356 (-)NCBI
RefSeq Acc Id: XM_039084380   ⟹   XP_038940308
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr893,183,357 - 3,192,713 (+)NCBI
mRatBN7.292,907,664 - 2,916,404 (-)NCBI
RefSeq Acc Id: XM_063267818   ⟹   XP_063123888
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr893,183,723 - 3,228,790 (+)NCBI
RefSeq Acc Id: XM_063267819   ⟹   XP_063123889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr893,183,672 - 3,253,392 (+)NCBI
RefSeq Acc Id: XM_063267820   ⟹   XP_063123890
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr893,183,662 - 3,228,790 (+)NCBI
RefSeq Acc Id: XM_063267821   ⟹   XP_063123891
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr893,183,664 - 3,228,790 (+)NCBI
RefSeq Acc Id: XM_063267822   ⟹   XP_063123892
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr893,211,272 - 3,228,790 (+)NCBI
RefSeq Acc Id: XM_063267823   ⟹   XP_063123893
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr893,210,984 - 3,228,790 (+)NCBI
RefSeq Acc Id: XR_010054674
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr893,211,272 - 3,215,828 (+)NCBI
RefSeq Acc Id: XR_010054675
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr893,211,272 - 3,228,790 (+)NCBI
RefSeq Acc Id: XP_006244341   ⟸   XM_006244279
- Peptide Label: isoform X6
- UniProtKB: M0RCF8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038940308   ⟸   XM_039084380
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038940306   ⟸   XM_039084378
- Peptide Label: isoform X2
- UniProtKB: M0R6S6 (UniProtKB/TrEMBL),   M0RCF8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000039060   ⟸   ENSRNOT00000050485
Ensembl Acc Id: ENSRNOP00000086580   ⟸   ENSRNOT00000095705
Ensembl Acc Id: ENSRNOP00000074663   ⟸   ENSRNOT00000079703
Ensembl Acc Id: ENSRNOP00000067276   ⟸   ENSRNOT00000075578
Ensembl Acc Id: ENSRNOP00000065132   ⟸   ENSRNOT00000072533
Ensembl Acc Id: ENSRNOP00000084428   ⟸   ENSRNOT00000101947
RefSeq Acc Id: XP_063123890   ⟸   XM_063267820
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063123891   ⟸   XM_063267821
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063123889   ⟸   XM_063267819
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063123888   ⟸   XM_063267818
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063123893   ⟸   XM_063267823
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063123892   ⟸   XM_063267822
- Peptide Label: isoform X8
Protein Domains
Disks large homolog 5 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R6S6-F1-model_v2 AlphaFold M0R6S6 1-169 view protein structure
AF-A0A0G2K8M4-F1-model_v2 AlphaFold A0A0G2K8M4 1-235 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2321302 AgrOrtholog
BioCyc Gene G2FUF-28457 BioCyc
Ensembl Genes ENSRNOG00000047581 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050485.7 UniProtKB/TrEMBL
  ENSRNOT00000072533.2 UniProtKB/TrEMBL
  ENSRNOT00000075578.3 UniProtKB/TrEMBL
  ENSRNOT00000079703.2 UniProtKB/TrEMBL
  ENSRNOT00000095705.1 UniProtKB/TrEMBL
  ENSRNOT00000101947.1 UniProtKB/TrEMBL
InterPro DUF622 UniProtKB/TrEMBL
NCBI Gene 100360856 ENTREZGENE
PANTHER 2610042L04RIK PROTEIN-RELATED UniProtKB/TrEMBL
  SPEER/SPETEX UniProtKB/TrEMBL
Pfam Takusan UniProtKB/TrEMBL
PhenoGen Spetex2l2 PhenoGen
RatGTEx ENSRNOG00000047581 RatGTEx
UniProt A0A0G2K8M4_RAT UniProtKB/TrEMBL
  A0A8I5ZZJ1_RAT UniProtKB/TrEMBL
  A0A8I6A2H0_RAT UniProtKB/TrEMBL
  F1LWG9_RAT UniProtKB/TrEMBL
  M0R6S6 ENTREZGENE, UniProtKB/TrEMBL
  M0RCF8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Spetex2l2  Spetex-2 protein like 2  LOC100360856  hypothetical protein LOC100360856  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC100360856  hypothetical protein LOC100360856  AABR07066700.1    Data merged from RGD:15005289 737654 PROVISIONAL
2019-11-08 AABR07066700.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2015-07-29 LOC100360856  hypothetical protein LOC100360856  LOC100361155  rCG43589-like  Data merged from RGD:2320706 737654 PROVISIONAL
2015-07-29 LOC100360856  hypothetical protein LOC100360856  LOC100360963  hypothetical protein LOC100360963  Data merged from RGD:2321097 737654 PROVISIONAL
2015-07-29 LOC100360856  hypothetical protein LOC100360856  LOC691633  similar to hypothetical protein LOC363306  Data merged from RGD:1597260 737654 PROVISIONAL
2015-07-29 LOC100360856  hypothetical protein LOC100360856  LOC690576  similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)  Data merged from RGD:1594685 737654 PROVISIONAL
2015-07-29 LOC100360856  hypothetical protein LOC100360856  LOC501089  similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)  Data merged from RGD:1591923 737654 PROVISIONAL
2015-07-29 LOC100360856  hypothetical protein LOC100360856  LOC363433  hypothetical LOC363433  Data merged from RGD:1589727 737654 PROVISIONAL
2010-05-05 LOC100360856  hypothetical protein LOC100360856      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-05 LOC100360963  hypothetical protein LOC100360963      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-05 LOC100361155  rCG43589-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC501089  similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)  LOC501248  similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)  Data merged from RGD:1589619 1643240 APPROVED
2006-11-20 LOC691633  similar to hypothetical protein LOC363306      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC690576  similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC501089  similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC363433  hypothetical LOC363433      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC501248  similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)      Symbol and Name status set to provisional 70820 PROVISIONAL