Spic-ps2 (Spi-C transcription factor, pseudogene 2) - Rat Genome Database

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Gene: Spic-ps2 (Spi-C transcription factor, pseudogene 2) Rattus norvegicus
Analyze
Symbol: Spic-ps2
Name: Spi-C transcription factor, pseudogene 2
RGD ID: 2320932
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC100361028; Spi-C transcription factor (Spi-1/PU.1 related)-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81582,237,624 - 82,239,736 (-)NCBIGRCr8
mRatBN7.21575,829,781 - 75,831,885 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01583,472,923 - 83,474,228 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01586,984,214 - 86,985,524 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41582,861,665 - 82,862,526 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1575,070,129 - 75,071,434 (-)NCBICelera
Cytogenetic Map15q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Spic-ps2
12 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)157369065795018120Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)157369051895018228Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XR_086033
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.01586,984,790 - 86,985,651 (-)NCBI
RGSC_v3.41582,861,665 - 82,862,526 (-)RGD
RefSeq Acc Id: XR_146629
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1575,070,710 - 75,071,571 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-12787 BioCyc
NCBI Gene 100361028 ENTREZGENE
PhenoGen Spic-ps2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Spic-ps2  Spi-C transcription factor, pseudogene 2  LOC100361028  Spi-C transcription factor (Spi-1/PU.1 related)-like  Symbol and Name Changed 1299863 APPROVED
2010-05-05 LOC100361028  Spi-C transcription factor (Spi-1/PU.1 related)-like      Symbol and Name status set to provisional 70820 PROVISIONAL