Rnf123 (ring finger protein 123) - Rat Genome Database

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Gene: Rnf123 (ring finger protein 123) Rattus norvegicus
Analyze
Symbol: Rnf123
Name: ring finger protein 123
RGD ID: 2301394
Description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein maturation; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol and nuclear membrane. Predicted to be active in cytoplasm. Orthologous to human RNF123 (ring finger protein 123); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: E3 ubiquitin-protein ligase RNF123; hypothetical protein LOC100190936; kip1 ubiquitination-promoting complex protein 1; RING-type E3 ubiquitin transferase RNF123
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,618,776 - 117,646,400 (-)NCBIGRCr8
mRatBN7.28108,740,176 - 108,768,177 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,739,620 - 108,767,675 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8114,366,459 - 114,393,891 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,565,783 - 112,593,215 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,408,423 - 110,435,855 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08116,829,050 - 116,857,050 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,829,050 - 116,856,548 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,183,372 - 116,211,131 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48113,319,535 - 113,347,035 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8108,044,888 - 108,071,888 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,ISO,ISS)
cytosol  (IEA,ISO)
nuclear membrane  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:21229311   PMID:26514267   PMID:31148189  


Genomics

Comparative Map Data
Rnf123
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,618,776 - 117,646,400 (-)NCBIGRCr8
mRatBN7.28108,740,176 - 108,768,177 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,739,620 - 108,767,675 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8114,366,459 - 114,393,891 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,565,783 - 112,593,215 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,408,423 - 110,435,855 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08116,829,050 - 116,857,050 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,829,050 - 116,856,548 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,183,372 - 116,211,131 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48113,319,535 - 113,347,035 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8108,044,888 - 108,071,888 (-)NCBICelera
Cytogenetic Map8q32NCBI
RNF123
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38349,689,557 - 49,721,529 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl349,689,538 - 49,721,529 (+)EnsemblGRCh38hg38GRCh38
GRCh37349,726,990 - 49,758,962 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,701,994 - 49,733,966 (+)NCBINCBI36Build 36hg18NCBI36
Build 34349,701,993 - 49,733,965NCBI
Celera349,691,681 - 49,723,653 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef349,785,929 - 49,817,938 (+)NCBIHuRef
CHM1_1349,679,005 - 49,711,020 (+)NCBICHM1_1
T2T-CHM13v2.0349,718,842 - 49,750,815 (+)NCBIT2T-CHM13v2.0
Rnf123
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,928,869 - 107,957,183 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9107,928,733 - 107,960,545 (-)EnsemblGRCm39 Ensembl
GRCm389108,051,672 - 108,080,352 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,051,534 - 108,083,346 (-)EnsemblGRCm38mm10GRCm38
MGSCv379107,954,171 - 107,980,134 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369107,909,941 - 107,935,904 (-)NCBIMGSCv36mm8
Celera9107,661,690 - 107,687,572 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map959.07NCBI
Rnf123
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,596,080 - 1,625,672 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,595,970 - 1,622,633 (+)NCBIChiLan1.0ChiLan1.0
RNF123
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2249,676,350 - 49,708,128 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1349,681,127 - 49,712,902 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0349,621,909 - 49,653,668 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1350,865,324 - 50,889,509 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,865,022 - 50,889,509 (+)Ensemblpanpan1.1panPan2
RNF123
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,553,016 - 39,582,127 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,553,059 - 39,579,844 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2039,473,940 - 39,502,846 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02039,910,535 - 39,939,453 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2039,910,538 - 39,939,014 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12039,277,607 - 39,306,522 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02039,680,977 - 39,709,891 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02039,960,807 - 39,989,722 (-)NCBIUU_Cfam_GSD_1.0
Rnf123
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,546,366 - 64,575,535 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,306,968 - 1,336,032 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,306,849 - 1,336,032 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF123
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,218,384 - 32,250,739 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,216,761 - 32,250,742 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,397,754 - 35,429,943 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF123
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,084,216 - 11,116,527 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2211,085,808 - 11,116,287 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041155,883,929 - 155,916,356 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf123
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247303,618,269 - 3,645,797 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247303,617,488 - 3,645,797 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rnf123
97 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:120
Count of miRNA genes:64
Interacting mature miRNAs:69
Transcripts:ENSRNOT00000043825, ENSRNOT00000050344
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8102370617108923645Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat

Markers in Region
RH129768  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28108,744,055 - 108,744,231 (+)MAPPERmRatBN7.2
Rnor_6.08116,832,930 - 116,833,105NCBIRnor6.0
Rnor_5.08116,187,252 - 116,187,427UniSTSRnor5.0
RGSC_v3.48113,323,415 - 113,323,590UniSTSRGSC3.4
Celera8108,048,768 - 108,048,943UniSTS
Cytogenetic Map8q32UniSTS
RH139593  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28108,741,840 - 108,742,025 (+)MAPPERmRatBN7.2
Rnor_6.08116,830,715 - 116,830,899NCBIRnor6.0
Rnor_5.08116,185,037 - 116,185,221UniSTSRnor5.0
RGSC_v3.48113,321,200 - 113,321,384UniSTSRGSC3.4
Celera8108,046,553 - 108,046,737UniSTS
RH 3.4 Map81118.6UniSTS
Cytogenetic Map8q32UniSTS
BE119447  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28108,742,655 - 108,742,810 (+)MAPPERmRatBN7.2
Rnor_6.08116,831,530 - 116,831,684NCBIRnor6.0
Rnor_5.08116,185,852 - 116,186,006UniSTSRnor5.0
RGSC_v3.48113,322,015 - 113,322,169UniSTSRGSC3.4
Celera8108,047,368 - 108,047,522UniSTS
RH 3.4 Map81119.2UniSTS
Cytogenetic Map8q32UniSTS
MARC_17265-17266:1024683815:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28108,758,229 - 108,758,740 (+)MAPPERmRatBN7.2
Rnor_6.08116,847,103 - 116,847,613NCBIRnor6.0
Rnor_5.08116,201,425 - 116,201,935UniSTSRnor5.0
RGSC_v3.48113,337,588 - 113,338,098UniSTSRGSC3.4
Celera8108,062,960 - 108,063,470UniSTS
Cytogenetic Map8q32UniSTS
Amigo3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28108,742,329 - 108,743,321 (+)MAPPERmRatBN7.2
Rnor_6.08116,831,204 - 116,832,195NCBIRnor6.0
Rnor_5.08116,185,526 - 116,186,517UniSTSRnor5.0
RGSC_v3.48113,321,689 - 113,322,680UniSTSRGSC3.4
Celera8108,047,042 - 108,048,033UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000043825   ⟹   ENSRNOP00000041545
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8108,739,620 - 108,767,675 (-)Ensembl
Rnor_6.0 Ensembl8116,829,050 - 116,856,548 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000050344   ⟹   ENSRNOP00000049507
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl8116,829,234 - 116,855,062 (-)Ensembl
RefSeq Acc Id: NM_001191580   ⟹   NP_001178509
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,618,776 - 117,646,274 (-)NCBI
mRatBN7.28108,740,176 - 108,767,675 (-)NCBI
Rnor_6.08116,829,050 - 116,856,548 (-)NCBI
Rnor_5.08116,183,372 - 116,211,131 (-)NCBI
Celera8108,044,888 - 108,071,888 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243691   ⟹   XP_006243753
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,618,776 - 117,646,394 (-)NCBI
mRatBN7.28108,740,176 - 108,767,794 (-)NCBI
Rnor_6.08116,829,050 - 116,856,682 (-)NCBI
Rnor_5.08116,183,372 - 116,211,131 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243693   ⟹   XP_006243755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,618,776 - 117,646,275 (-)NCBI
mRatBN7.28108,740,176 - 108,767,686 (-)NCBI
Rnor_6.08116,829,050 - 116,856,682 (-)NCBI
Rnor_5.08116,183,372 - 116,211,131 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243695   ⟹   XP_006243757
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,618,776 - 117,646,400 (-)NCBI
mRatBN7.28108,740,176 - 108,767,815 (-)NCBI
Rnor_6.08116,829,050 - 116,856,682 (-)NCBI
Rnor_5.08116,183,372 - 116,211,131 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063264705   ⟹   XP_063120775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,618,776 - 117,646,322 (-)NCBI
RefSeq Acc Id: XM_063264706   ⟹   XP_063120776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,623,194 - 117,646,278 (-)NCBI
RefSeq Acc Id: NP_001178509   ⟸   NM_001191580
- UniProtKB: D3ZXK7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006243753   ⟸   XM_006243691
- Peptide Label: isoform X1
- UniProtKB: D3ZXK7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006243757   ⟸   XM_006243695
- Peptide Label: isoform X1
- UniProtKB: D3ZXK7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006243755   ⟸   XM_006243693
- Peptide Label: isoform X1
- UniProtKB: D3ZXK7 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000041545   ⟸   ENSRNOT00000043825
Ensembl Acc Id: ENSRNOP00000049507   ⟸   ENSRNOT00000050344
RefSeq Acc Id: XP_063120775   ⟸   XM_063264705
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063120776   ⟸   XM_063264706
- Peptide Label: isoform X3
Protein Domains
B30.2/SPRY

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZXK7-F1-model_v2 AlphaFold D3ZXK7 1-1318 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696288
Promoter ID:EPDNEW_R6813
Type:initiation region
Name:Rnf123_1
Description:ring finger protein 123
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08116,856,547 - 116,856,607EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2301394 AgrOrtholog
BioCyc Gene G2FUF-29160 BioCyc
Ensembl Genes ENSRNOG00000033378 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000043825.5 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot
InterPro B30.2/SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNF123/RSPRY1-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY_RNF123 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot
NCBI Gene 100190936 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF123 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13363 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C3HC4_3 UniProtKB/Swiss-Prot
PhenoGen Rnf123 PhenoGen
PROSITE B302_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000033378 RatGTEx
SMART RING UniProtKB/Swiss-Prot
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot
  SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3ZXK7 ENTREZGENE
  F1LMI7_RAT UniProtKB/TrEMBL
  RN123_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-11 Rnf123  ring finger protein 123      Symbol and Name status set to provisional 70820 PROVISIONAL