Rnf123 (ring finger protein 123) - Rat Genome Database

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Gene: Rnf123 (ring finger protein 123) Chinchilla lanigera
Analyze
Symbol: Rnf123
Name: ring finger protein 123
RGD ID: 8979349
Description: ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN protein maturation (ortholog); protein polyubiquitination (ortholog); ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase RNF123
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,596,080 - 1,625,672 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,595,970 - 1,622,633 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rnf123
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,596,080 - 1,625,672 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,595,970 - 1,622,633 (+)NCBIChiLan1.0ChiLan1.0
RNF123
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38349,689,557 - 49,721,529 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl349,689,538 - 49,721,529 (+)EnsemblGRCh38hg38GRCh38
GRCh37349,726,990 - 49,758,962 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,701,994 - 49,733,966 (+)NCBINCBI36Build 36hg18NCBI36
Build 34349,701,993 - 49,733,965NCBI
Celera349,691,681 - 49,723,653 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef349,785,929 - 49,817,938 (+)NCBIHuRef
CHM1_1349,679,005 - 49,711,020 (+)NCBICHM1_1
T2T-CHM13v2.0349,718,842 - 49,750,815 (+)NCBIT2T-CHM13v2.0
Rnf123
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,928,869 - 107,957,183 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9107,928,733 - 107,960,545 (-)EnsemblGRCm39 Ensembl
GRCm389108,051,672 - 108,080,352 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,051,534 - 108,083,346 (-)EnsemblGRCm38mm10GRCm38
MGSCv379107,954,171 - 107,980,134 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369107,909,941 - 107,935,904 (-)NCBIMGSCv36mm8
Celera9107,661,690 - 107,687,572 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map959.07NCBI
Rnf123
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,618,776 - 117,646,400 (-)NCBIGRCr8
mRatBN7.28108,740,176 - 108,768,177 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,739,620 - 108,767,675 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8114,366,459 - 114,393,891 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,565,783 - 112,593,215 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,408,423 - 110,435,855 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08116,829,050 - 116,857,050 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,829,050 - 116,856,548 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,183,372 - 116,211,131 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48113,319,535 - 113,347,035 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8108,044,888 - 108,071,888 (-)NCBICelera
Cytogenetic Map8q32NCBI
RNF123
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2249,676,350 - 49,708,128 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1349,681,127 - 49,712,902 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0349,621,909 - 49,653,668 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1350,865,324 - 50,889,509 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,865,022 - 50,889,509 (+)Ensemblpanpan1.1panPan2
RNF123
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,553,016 - 39,582,127 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,553,059 - 39,579,844 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2039,473,940 - 39,502,846 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02039,910,535 - 39,939,453 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2039,910,538 - 39,939,014 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12039,277,607 - 39,306,522 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02039,680,977 - 39,709,891 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02039,960,807 - 39,989,722 (-)NCBIUU_Cfam_GSD_1.0
Rnf123
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,546,366 - 64,575,535 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,306,968 - 1,336,032 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,306,849 - 1,336,032 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF123
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,218,384 - 32,250,739 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,216,761 - 32,250,742 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,397,754 - 35,429,943 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF123
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,084,216 - 11,116,527 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2211,085,808 - 11,116,287 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041155,883,929 - 155,916,356 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf123
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247303,618,269 - 3,645,797 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247303,617,488 - 3,645,797 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000012177   ⟹   ENSCLAP00000012036
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555321,596,080 - 1,625,672 (+)Ensembl
RefSeq Acc Id: XM_005410209   ⟹   XP_005410266
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555321,595,970 - 1,622,633 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005410211   ⟹   XP_005410268
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555321,596,080 - 1,622,633 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005410266 (Get FASTA)   NCBI Sequence Viewer  
  XP_005410268 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000012036
  ENSCLAP00000012036.1
Reference Protein Sequences
RefSeq Acc Id: XP_005410266   ⟸   XM_005410209
- UniProtKB: A0A8C2YNP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005410268   ⟸   XM_005410211
- UniProtKB: A0A8C2YNP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000012036   ⟸   ENSCLAT00000012177
Protein Domains
B30.2/SPRY   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008303 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012177 ENTREZGENE
  ENSCLAT00000012177.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  RNF123/RSPRY1-like UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  SPRY_RNF123 UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene Rnf123 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF123 UniProtKB/TrEMBL
  PTHR13363 UniProtKB/TrEMBL
Pfam SPRY UniProtKB/TrEMBL
  zf-C3HC4_3 UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A8C2YNP3 ENTREZGENE, UniProtKB/TrEMBL