Rnf123 (ring finger protein 123) - Rat Genome Database
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Gene: Rnf123 (ring finger protein 123) Mus musculus
Analyze
Symbol: Rnf123
Name: ring finger protein 123
RGD ID: 1623878
MGI Page MGI
Description: Is expressed in liver. Orthologous to human RNF123 (ring finger protein 123); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: BC003945; E3 ubiquitin-protein ligase RNF123; kip1 ubiquitination-promoting complex protein 1; KPC; Kpc1; RING-type E3 ubiquitin transferase RNF123; ubiquitin ligase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,928,869 - 107,957,183 (-)NCBIGRCm39mm39
GRCm39 Ensembl9107,928,733 - 107,960,545 (-)Ensembl
GRCm389108,051,672 - 108,080,352 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,051,534 - 108,083,346 (-)EnsemblGRCm38mm10GRCm38
MGSCv379107,954,171 - 107,980,134 (-)NCBIGRCm37mm9NCBIm37
MGSCv369107,909,941 - 107,935,904 (-)NCBImm8
Celera9107,661,690 - 107,687,572 (-)NCBICelera
Cytogenetic Map9F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,ISO)
cytosol  (ISO)
nuclear membrane  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15489334   PMID:15531880   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:19015242   PMID:19276117   PMID:21267068   PMID:21873635   PMID:28190767   PMID:29617656   PMID:32325033  


Genomics

Comparative Map Data
Rnf123
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,928,869 - 107,957,183 (-)NCBIGRCm39mm39
GRCm39 Ensembl9107,928,733 - 107,960,545 (-)Ensembl
GRCm389108,051,672 - 108,080,352 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,051,534 - 108,083,346 (-)EnsemblGRCm38mm10GRCm38
MGSCv379107,954,171 - 107,980,134 (-)NCBIGRCm37mm9NCBIm37
MGSCv369107,909,941 - 107,935,904 (-)NCBImm8
Celera9107,661,690 - 107,687,572 (-)NCBICelera
Cytogenetic Map9F1NCBI
RNF123
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl349,689,538 - 49,721,529 (+)EnsemblGRCh38hg38GRCh38
GRCh38349,688,753 - 49,721,529 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37349,726,990 - 49,758,962 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,701,994 - 49,733,966 (+)NCBINCBI36hg18NCBI36
Build 34349,701,993 - 49,733,965NCBI
Celera349,691,681 - 49,723,653 (+)NCBI
Cytogenetic Map3p21.31NCBI
HuRef349,785,929 - 49,817,938 (+)NCBIHuRef
CHM1_1349,678,987 - 49,711,020 (+)NCBICHM1_1
Rnf123
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28108,740,176 - 108,768,177 (-)NCBI
Rnor_6.0 Ensembl8116,829,050 - 116,856,548 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08116,829,050 - 116,857,050 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08116,183,372 - 116,211,131 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48113,319,535 - 113,347,035 (-)NCBIRGSC3.4rn4RGSC3.4
Celera8108,044,888 - 108,071,888 (-)NCBICelera
Cytogenetic Map8q32NCBI
Rnf123
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,596,080 - 1,625,672 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,595,970 - 1,622,633 (+)NCBIChiLan1.0ChiLan1.0
RNF123
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,865,324 - 50,889,509 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,865,022 - 50,889,509 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,621,909 - 49,653,668 (+)NCBIMhudiblu_PPA_v0panPan3
RNF123
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2039,553,059 - 39,579,844 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12039,553,016 - 39,582,127 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rnf123
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365291,306,849 - 1,336,032 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF123
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,208,342 - 32,250,745 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,216,761 - 32,250,742 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,397,754 - 35,429,943 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF123
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,084,216 - 11,116,527 (+)NCBI
ChlSab1.1 Ensembl2211,085,808 - 11,116,287 (+)Ensembl
Rnf123
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247303,617,488 - 3,645,797 (+)NCBI

Position Markers
RH136162  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,052,530 - 108,052,731UniSTSGRCm38
MGSCv379107,954,861 - 107,955,062UniSTSGRCm37
Celera9107,662,380 - 107,662,581UniSTS
Cytogenetic Map9F2UniSTS
D9Dcr105  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,059,509 - 108,059,604UniSTSGRCm38
MGSCv379107,961,840 - 107,961,935UniSTSGRCm37
Celera9107,669,359 - 107,669,464UniSTS
Cytogenetic Map9F2UniSTS
cM Map9 UniSTS
D9Dcr106  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,078,300 - 108,078,401UniSTSGRCm38
MGSCv379107,980,631 - 107,980,732UniSTSGRCm37
Celera9107,688,069 - 107,688,170UniSTS
Cytogenetic Map9F2UniSTS
cM Map9 UniSTS
Amigo3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,053,811 - 108,054,802UniSTSGRCm38
MGSCv379107,956,142 - 107,957,133UniSTSGRCm37
Celera9107,663,661 - 107,664,652UniSTS
Cytogenetic Map9F2UniSTS
cM Map9 UniSTS
MARC_17265-17266:1024683815:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,069,210 - 108,069,716UniSTSGRCm38
MGSCv379107,971,541 - 107,972,047UniSTSGRCm37
Celera9107,679,072 - 107,679,578UniSTS
Cytogenetic Map9F2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3541
Count of miRNA genes:737
Interacting mature miRNAs:964
Transcripts:ENSMUST00000047746, ENSMUST00000159136, ENSMUST00000159306, ENSMUST00000159372, ENSMUST00000159523, ENSMUST00000159526, ENSMUST00000160249, ENSMUST00000160649, ENSMUST00000160841, ENSMUST00000161673, ENSMUST00000161828, ENSMUST00000162123, ENSMUST00000162152, ENSMUST00000162355, ENSMUST00000162516, ENSMUST00000162753, ENSMUST00000174504, ENSMUST00000178267
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001311152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_032543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC137678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY744153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY286344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LXEJ02005665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000047746   ⟹   ENSMUSP00000040803
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,051,677 - 108,079,301 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159136
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,055,899 - 108,079,728 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159306   ⟹   ENSMUSP00000125695
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,052,225 - 108,059,730 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159372   ⟹   ENSMUSP00000123933
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,077,722 - 108,083,344 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159523
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,051,693 - 108,052,230 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159526
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,052,242 - 108,052,699 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160249   ⟹   ENSMUSP00000124548
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,051,534 - 108,083,346 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160649   ⟹   ENSMUSP00000125495
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,052,234 - 108,079,375 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160841
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,058,168 - 108,061,989 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161673
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,051,677 - 108,079,740 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161828   ⟹   ENSMUSP00000125213
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,071,160 - 108,078,269 (-)Ensembl
RefSeq Acc Id: ENSMUST00000162123
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,056,066 - 108,057,039 (-)Ensembl
RefSeq Acc Id: ENSMUST00000162152
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,071,382 - 108,073,121 (-)Ensembl
RefSeq Acc Id: ENSMUST00000162355   ⟹   ENSMUSP00000125745
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,051,672 - 108,079,301 (-)Ensembl
RefSeq Acc Id: ENSMUST00000162516   ⟹   ENSMUSP00000124986
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,071,446 - 108,079,266 (-)Ensembl
RefSeq Acc Id: ENSMUST00000162753   ⟹   ENSMUSP00000124824
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,056,560 - 108,059,765 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174504   ⟹   ENSMUSP00000134087
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,071,219 - 108,079,305 (-)Ensembl
RefSeq Acc Id: ENSMUST00000178267   ⟹   ENSMUSP00000136953
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,051,677 - 108,079,375 (-)Ensembl
RefSeq Acc Id: NM_001311152   ⟹   NP_001298081
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,928,871 - 107,956,500 (-)NCBI
GRCm389108,051,672 - 108,079,301 (-)NCBI
Sequence:
RefSeq Acc Id: NM_032543   ⟹   NP_115932
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,928,871 - 107,956,574 (-)NCBI
GRCm389108,051,672 - 108,079,375 (-)NCBI
MGSCv379107,954,171 - 107,980,134 (-)RGD
Celera9107,661,522 - 107,689,144 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511877   ⟹   XP_006511940
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,928,869 - 107,956,684 (-)NCBI
GRCm389108,051,672 - 108,079,494 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511878   ⟹   XP_006511941
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,928,869 - 107,957,183 (-)NCBI
GRCm389108,051,672 - 108,080,352 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511879   ⟹   XP_006511942
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,928,869 - 107,957,183 (-)NCBI
GRCm389108,051,672 - 108,080,352 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313707   ⟹   XP_017169196
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,928,869 - 107,956,683 (-)NCBI
GRCm389108,051,672 - 108,079,494 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244744   ⟹   XP_030100604
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,928,869 - 107,956,671 (-)NCBI
GRCm389108,051,672 - 108,079,485 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244745   ⟹   XP_030100605
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,928,869 - 107,948,441 (-)NCBI
GRCm389108,051,672 - 108,071,242 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155418   ⟹   XP_036011311
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,928,869 - 107,956,686 (-)NCBI
RefSeq Acc Id: XM_036155419   ⟹   XP_036011312
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,931,731 - 107,956,697 (-)NCBI
RefSeq Acc Id: XR_004935614
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,928,871 - 107,956,702 (-)NCBI
RefSeq Acc Id: XR_004935615
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,928,871 - 107,956,707 (-)NCBI
RefSeq Acc Id: XR_004935616
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,929,120 - 107,956,706 (-)NCBI
RefSeq Acc Id: XR_004935617
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,929,120 - 107,956,706 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_115932   ⟸   NM_032543
- Peptide Label: isoform 2
- UniProtKB: Q5XPI3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511942   ⟸   XM_006511879
- Peptide Label: isoform X1
- UniProtKB: Q5XPI3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511941   ⟸   XM_006511878
- Peptide Label: isoform X1
- UniProtKB: Q5XPI3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511940   ⟸   XM_006511877
- Peptide Label: isoform X1
- UniProtKB: Q5XPI3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169196   ⟸   XM_017313707
- Peptide Label: isoform X3
- UniProtKB: Q5XPI3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001298081   ⟸   NM_001311152
- Peptide Label: isoform 1
- UniProtKB: Q5XPI3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030100604   ⟸   XM_030244744
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030100605   ⟸   XM_030244745
- Peptide Label: isoform X6
RefSeq Acc Id: ENSMUSP00000125695   ⟸   ENSMUST00000159306
RefSeq Acc Id: ENSMUSP00000123933   ⟸   ENSMUST00000159372
RefSeq Acc Id: ENSMUSP00000136953   ⟸   ENSMUST00000178267
RefSeq Acc Id: ENSMUSP00000040803   ⟸   ENSMUST00000047746
RefSeq Acc Id: ENSMUSP00000124548   ⟸   ENSMUST00000160249
RefSeq Acc Id: ENSMUSP00000134087   ⟸   ENSMUST00000174504
RefSeq Acc Id: ENSMUSP00000125495   ⟸   ENSMUST00000160649
RefSeq Acc Id: ENSMUSP00000124824   ⟸   ENSMUST00000162753
RefSeq Acc Id: ENSMUSP00000125745   ⟸   ENSMUST00000162355
RefSeq Acc Id: ENSMUSP00000124986   ⟸   ENSMUST00000162516
RefSeq Acc Id: ENSMUSP00000125213   ⟸   ENSMUST00000161828
RefSeq Acc Id: XP_036011311   ⟸   XM_036155418
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036011312   ⟸   XM_036155419
- Peptide Label: isoform X4
Protein Domains
B30.2/SPRY

Promoters
RGD ID:6845047
Promoter ID:MM_KWN:58763
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_177275,   OTTMUST00000084993,   OTTMUST00000084994
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,953,591 - 107,958,497 (-)MPROMDB
RGD ID:6845042
Promoter ID:MM_KWN:58764
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000084998
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,958,956 - 107,959,622 (-)MPROMDB
RGD ID:6845045
Promoter ID:MM_KWN:58766
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000085000
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,964,026 - 107,964,526 (-)MPROMDB
RGD ID:6844738
Promoter ID:MM_KWN:58767
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver,   Lung
Transcripts:UC009ROI.1,   UC009RON.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,972,306 - 107,973,117 (-)MPROMDB
RGD ID:6845043
Promoter ID:MM_KWN:58769
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:OTTMUST00000084999
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,974,976 - 107,975,777 (-)MPROMDB
RGD ID:6844739
Promoter ID:MM_KWN:58771
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4
Transcripts:UC009ROO.1,   UC009ROP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,981,566 - 107,982,602 (-)MPROMDB
RGD ID:6845044
Promoter ID:MM_KWN:58772
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   Liver,   MEF_B6,   Spleen
Transcripts:ENSMUST00000047746,   OTTMUST00000084954,   OTTMUST00000084955,   OTTMUST00000084957,   OTTMUST00000084961,   OTTMUST00000084962,   OTTMUST00000084995
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,981,686 - 107,982,697 (-)MPROMDB
RGD ID:6845041
Promoter ID:MM_KWN:58774
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000084951,   OTTMUST00000084953
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,985,241 - 107,985,741 (-)MPROMDB
RGD ID:8670924
Promoter ID:EPDNEW_M13461
Type:initiation region
Name:Rnf123_1
Description:Mus musculus ring finger protein 123 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389108,079,296 - 108,079,356EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2148796 AgrOrtholog
Ensembl Genes ENSMUSG00000041528 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000040803 UniProtKB/Swiss-Prot
  ENSMUSP00000123933 UniProtKB/TrEMBL
  ENSMUSP00000124548 UniProtKB/Swiss-Prot
  ENSMUSP00000124824 UniProtKB/TrEMBL
  ENSMUSP00000124986 UniProtKB/TrEMBL
  ENSMUSP00000125213 UniProtKB/TrEMBL
  ENSMUSP00000125495 UniProtKB/TrEMBL
  ENSMUSP00000125695 UniProtKB/TrEMBL
  ENSMUSP00000125745 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000134087 UniProtKB/TrEMBL
  ENSMUSP00000136953 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000047746 UniProtKB/Swiss-Prot
  ENSMUST00000159306 UniProtKB/TrEMBL
  ENSMUST00000159372 UniProtKB/TrEMBL
  ENSMUST00000160249 UniProtKB/Swiss-Prot
  ENSMUST00000160649 UniProtKB/TrEMBL
  ENSMUST00000161673 ENTREZGENE
  ENSMUST00000161828 UniProtKB/TrEMBL
  ENSMUST00000162355 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000162516 UniProtKB/TrEMBL
  ENSMUST00000162753 UniProtKB/TrEMBL
  ENSMUST00000174504 UniProtKB/TrEMBL
  ENSMUST00000178267 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.920 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot
InterPro B30.2/SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY_RNF123 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot
KEGG Report mmu:84585 UniProtKB/Swiss-Prot
MGD MGI:2148796 ENTREZGENE
NCBI Gene 84585 ENTREZGENE
Pfam SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rnf123 PhenoGen
PROSITE B302_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot
SMART RING UniProtKB/Swiss-Prot
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E0CX26_MOUSE UniProtKB/TrEMBL
  E0CXL3_MOUSE UniProtKB/TrEMBL
  E0CYS5_MOUSE UniProtKB/TrEMBL
  F6U715_MOUSE UniProtKB/TrEMBL
  F7B5Z3_MOUSE UniProtKB/TrEMBL
  G3UYH5_MOUSE UniProtKB/TrEMBL
  Q05CH9_MOUSE UniProtKB/TrEMBL
  Q5XPI3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q6PGE0 UniProtKB/Swiss-Prot