Ca7 (carbonic anhydrase 7) - Rat Genome Database

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Gene: Ca7 (carbonic anhydrase 7) Heterocephalus glaber
Analyze
Symbol: Ca7
Name: carbonic anhydrase 7
RGD ID: 18916986
Description: ENCODES a protein that exhibits carbonate dehydratase activity (inferred); lyase activity (inferred); metal ion binding (inferred); INVOLVED IN regulation of intracellular pH (inferred); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474619,640,463 - 19,648,615 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474619,640,436 - 19,648,708 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ca7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474619,640,463 - 19,648,615 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474619,640,436 - 19,648,708 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
CA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381666,844,414 - 66,854,147 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1666,844,414 - 66,854,153 (+)Ensemblhg38GRCh38
GRCh371666,878,317 - 66,888,050 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361665,435,783 - 65,445,551 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341665,435,891 - 65,445,541NCBI
Celera1651,386,593 - 51,396,359 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1652,752,480 - 52,762,235 (+)NCBIHuRef
CHM1_11668,285,378 - 68,295,146 (+)NCBICHM1_1
T2T-CHM13v2.01672,638,709 - 72,648,442 (+)NCBIT2T-CHM13v2.0
Car7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398105,261,326 - 105,276,979 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8105,261,321 - 105,276,975 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm388104,534,694 - 104,550,347 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8104,534,689 - 104,550,343 (+)Ensemblmm10GRCm38
MGSCv378107,064,707 - 107,074,243 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368107,429,936 - 107,439,472 (+)NCBIMGSCv36mm8
Celera8108,773,242 - 108,782,734 (+)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Car7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr819435,520 - 444,927 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl19435,522 - 452,384 (-)EnsemblGRCr8
mRatBN7.219429,063 - 438,478 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl19429,075 - 438,467 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx19424,817 - 434,251 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01951,853 - 61,284 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.019466,826 - 476,258 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd19442,327 - 451,720 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive194,250,346 - 4,259,739 (-)NCBILyon_Normotensive
Lyon_Hypertensive194,743,163 - 4,752,556 (-)NCBILyon_Hypertensive
F344_StmMcwi19290,595 - 300,029 (-)NCBIF344_StmMcwi
Rnor_6.019636,545 - 645,935 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl19636,545 - 645,937 (-)Ensemblrn6Rnor6.0
Rnor_5.019630,356 - 639,746 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.419365,680 - 375,074 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera19424,600 - 433,992 (-)NCBICelera
RGSC_v3.119365,695 - 375,513 (-)NCBI
Cytogenetic Map19p14NCBI
Ca7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543323,365,718 - 23,374,548 (+)Ensembl
ChiLan1.0NW_00495543323,365,832 - 23,374,517 (+)NCBIChiLan1.0ChiLan1.0
CA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21876,345,564 - 76,355,356 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11682,258,074 - 82,267,859 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01647,161,021 - 47,170,800 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11666,262,259 - 66,272,316 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1666,262,362 - 66,271,665 (+)EnsemblpanPan2panpan1.1
CA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1582,446,239 - 82,455,445 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl582,446,246 - 82,455,590 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha582,434,936 - 82,444,145 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0582,882,872 - 82,892,083 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,882,877 - 82,892,233 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,706,026 - 82,715,234 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0582,392,889 - 82,402,094 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0583,031,862 - 83,041,073 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ca7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934942,469,000 - 42,477,123 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647517,112,004 - 17,120,105 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647517,112,004 - 17,120,105 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl627,548,706 - 27,563,861 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1627,548,647 - 27,563,966 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CA7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1552,541,008 - 52,551,307 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl552,541,527 - 52,551,389 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604723,360,443 - 23,370,286 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ca7
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11712,818,146 - 12,826,890 (+)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000023927   ⟹   ENSHGLP00000023709
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474619,640,463 - 19,648,615 (-)Ensembl
RefSeq Acc Id: XM_004843097   ⟹   XP_004843154
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,640,437 - 19,648,704 (-)NCBI
RefSeq Acc Id: XM_004843098   ⟹   XP_004843155
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,640,436 - 19,648,708 (-)NCBI
RefSeq Acc Id: XM_021256936   ⟹   XP_021112595
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,640,436 - 19,648,041 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004843154 (Get FASTA)   NCBI Sequence Viewer  
  XP_004843155 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112595 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000023709
RefSeq Acc Id: XP_004843155   ⟸   XM_004843098
- Peptide Label: isoform X2
- UniProtKB: G5BDH3 (UniProtKB/TrEMBL),   A0AAX6P3W3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112595   ⟸   XM_021256936
- Peptide Label: isoform X3
- UniProtKB: A0AAX6SVU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004843154   ⟸   XM_004843097
- Peptide Label: isoform X1
- UniProtKB: G5BDH3 (UniProtKB/TrEMBL),   A0AAX6P408 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000023709   ⟸   ENSHGLT00000023927


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016917 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000023927 ENTREZGENE
Gene3D-CATH Alpha carbonic anhydrase UniProtKB/TrEMBL
InterPro Alpha_CA_VII UniProtKB/TrEMBL
  CA_dom UniProtKB/TrEMBL
  CA_dom_sf UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class_CS UniProtKB/TrEMBL
KEGG Report hgl:101701928 UniProtKB/TrEMBL
NCBI Gene Ca7 ENTREZGENE
PANTHER CARBONIC ANHYDRASE UniProtKB/TrEMBL
  CARBONIC ANHYDRASE 7 UniProtKB/TrEMBL
Pfam Carb_anhydrase UniProtKB/TrEMBL
PROSITE ALPHA_CA_1 UniProtKB/TrEMBL
  ALPHA_CA_2 UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/TrEMBL
Superfamily-SCOP Carbonic anhydrase UniProtKB/TrEMBL
UniProt A0AAX6P3W3 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6P408 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SVU1 ENTREZGENE, UniProtKB/TrEMBL
  G5BDH3 ENTREZGENE, UniProtKB/TrEMBL