CA7 (carbonic anhydrase 7) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CA7 (carbonic anhydrase 7) Sus scrofa
Analyze
Symbol: CA7
Name: carbonic anhydrase 7
RGD ID: 14200064
Description: ENCODES a protein that exhibits carbonate dehydratase activity (inferred); zinc ion binding (inferred); INVOLVED IN positive regulation of cellular pH reduction (ortholog); positive regulation of synaptic transmission, GABAergic (ortholog); regulation of chloride transport (ortholog); FOUND IN cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl627,548,706 - 27,563,861 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1627,548,647 - 27,563,966 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
CA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl627,548,706 - 27,563,861 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1627,548,647 - 27,563,966 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1666,844,414 - 66,854,153 (+)EnsemblGRCh38hg38GRCh38
GRCh381666,844,414 - 66,854,149 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371666,878,317 - 66,888,050 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361665,435,783 - 65,445,551 (+)NCBINCBI36hg18NCBI36
Build 341665,435,891 - 65,445,541NCBI
Celera1651,386,593 - 51,396,359 (+)NCBI
Cytogenetic Map16q22.1NCBI
HuRef1652,752,480 - 52,762,235 (+)NCBIHuRef
CHM1_11668,285,378 - 68,295,146 (+)NCBICHM1_1
Car7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398105,261,326 - 105,276,979 (+)NCBIGRCm39mm39
GRCm39 Ensembl8105,261,321 - 105,276,975 (+)Ensembl
GRCm388104,534,694 - 104,550,347 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8104,534,689 - 104,550,343 (+)EnsemblGRCm38mm10GRCm38
MGSCv378107,064,707 - 107,074,243 (+)NCBIGRCm37mm9NCBIm37
MGSCv368107,429,936 - 107,439,472 (+)NCBImm8
Celera8108,773,242 - 108,782,734 (+)NCBICelera
Cytogenetic Map8D3NCBI
Car7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.219429,063 - 438,478 (-)NCBI
Rnor_6.0 Ensembl19636,545 - 645,937 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.019636,545 - 645,935 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.019630,356 - 639,746 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.419365,680 - 375,074 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.119365,695 - 375,513 (-)NCBI
Celera19424,600 - 433,992 (-)NCBICelera
Cytogenetic Map19p14NCBI
Ca7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543323,365,718 - 23,374,548 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543323,365,832 - 23,374,517 (+)NCBIChiLan1.0ChiLan1.0
CA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11666,262,259 - 66,272,316 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1666,262,362 - 66,271,665 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01647,161,021 - 47,170,800 (+)NCBIMhudiblu_PPA_v0panPan3
CA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1582,446,239 - 82,455,445 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl582,446,246 - 82,455,590 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha582,434,936 - 82,444,145 (-)NCBI
ROS_Cfam_1.0582,882,872 - 82,892,083 (-)NCBI
UMICH_Zoey_3.1582,706,026 - 82,715,234 (-)NCBI
UNSW_CanFamBas_1.0582,392,889 - 82,402,094 (-)NCBI
UU_Cfam_GSD_1.0583,031,862 - 83,041,073 (-)NCBI
Ca7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934942,469,000 - 42,477,123 (-)NCBI
SpeTri2.0NW_00493647517,112,004 - 17,120,105 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CA7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1552,541,008 - 52,551,307 (+)NCBI
ChlSab1.1 Ensembl552,541,527 - 52,551,389 (+)Ensembl
Ca7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474619,640,436 - 19,648,708 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system nervous system renal system reproductive system
High
Medium
Low 5 15
Below cutoff 2 5 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000038134   ⟹   ENSSSCP00000059237
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl627,549,167 - 27,558,090 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000039224   ⟹   ENSSSCP00000036890
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl627,548,707 - 27,563,861 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000063096   ⟹   ENSSSCP00000051527
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl627,548,706 - 27,558,090 (+)Ensembl
RefSeq Acc Id: XM_021094019   ⟹   XP_020949678
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1627,548,647 - 27,563,966 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021094020   ⟹   XP_020949679
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1627,548,650 - 27,558,093 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020949678 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949679 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020949678   ⟸   XM_021094019
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020949679   ⟸   XM_021094020
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000036890   ⟸   ENSSSCT00000039224
RefSeq Acc Id: ENSSSCP00000051527   ⟸   ENSSSCT00000063096
RefSeq Acc Id: ENSSSCP00000059237   ⟸   ENSSSCT00000038134
Protein Domains
Alpha-carbonic anhydrase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038785 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070018796 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000036890 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000051527 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000059237 UniProtKB/TrEMBL
  ENSSSCP00070031033 UniProtKB/TrEMBL
  ENSSSCP00070031040 UniProtKB/TrEMBL
  ENSSSCP00070031045 UniProtKB/TrEMBL
  ENSSSCP00070031048 UniProtKB/TrEMBL
  ENSSSCP00070031057 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000038134 UniProtKB/TrEMBL
  ENSSSCT00000039224 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000063096 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070037109 UniProtKB/TrEMBL
  ENSSSCT00070037118 UniProtKB/TrEMBL
  ENSSSCT00070037123 UniProtKB/TrEMBL
  ENSSSCT00070037126 UniProtKB/TrEMBL
  ENSSSCT00070037136 UniProtKB/TrEMBL
Gene3D-CATH 3.10.200.10 UniProtKB/TrEMBL
InterPro Alpha_CA_VII UniProtKB/TrEMBL
  CA_dom UniProtKB/TrEMBL
  CA_dom_sf UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class_CS UniProtKB/TrEMBL
NCBI Gene CA7 ENTREZGENE
PANTHER PTHR18952 UniProtKB/TrEMBL
Pfam Carb_anhydrase UniProtKB/TrEMBL
PROSITE ALPHA_CA_1 UniProtKB/TrEMBL
  ALPHA_CA_2 UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/TrEMBL
Superfamily-SCOP SSF51069 UniProtKB/TrEMBL
UniProt A0A286ZZG4_PIG UniProtKB/TrEMBL
  A0A287B616_PIG UniProtKB/TrEMBL
  A0A287BSW6_PIG UniProtKB/TrEMBL
  A0A4X1ULU5_PIG UniProtKB/TrEMBL
  A0A4X1ULV1_PIG UniProtKB/TrEMBL
  A0A4X1UP14_PIG UniProtKB/TrEMBL
  A0A4X1US07_PIG UniProtKB/TrEMBL
  A0A4X1US22_PIG UniProtKB/TrEMBL
VGNC ID VGNC:86104 ENTREZGENE