Ca7 (carbonic anhydrase 7) - Rat Genome Database

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Gene: Ca7 (carbonic anhydrase 7) Ictidomys tridecemlineatus
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Symbol: Ca7
Name: carbonic anhydrase 7
RGD ID: 12452522
Description: ENCODES a protein that exhibits carbonate dehydratase activity (ortholog); INVOLVED IN positive regulation of cellular pH reduction (ortholog); positive regulation of synaptic transmission, GABAergic (ortholog); regulation of chloride transport (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934942,469,000 - 42,477,123 (-)NCBI
SpeTri2.0NW_00493647517,112,004 - 17,120,105 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Ca7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934942,469,000 - 42,477,123 (-)NCBI
SpeTri2.0NW_00493647517,112,004 - 17,120,105 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1666,844,414 - 66,854,153 (+)EnsemblGRCh38hg38GRCh38
GRCh381666,844,414 - 66,854,149 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371666,878,317 - 66,888,050 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361665,435,783 - 65,445,551 (+)NCBINCBI36hg18NCBI36
Build 341665,435,891 - 65,445,541NCBI
Celera1651,386,593 - 51,396,359 (+)NCBI
Cytogenetic Map16q22.1NCBI
HuRef1652,752,480 - 52,762,235 (+)NCBIHuRef
CHM1_11668,285,378 - 68,295,146 (+)NCBICHM1_1
Car7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398105,261,326 - 105,276,979 (+)NCBIGRCm39mm39
GRCm39 Ensembl8105,261,321 - 105,276,975 (+)Ensembl
GRCm388104,534,694 - 104,550,347 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8104,534,689 - 104,550,343 (+)EnsemblGRCm38mm10GRCm38
MGSCv378107,064,707 - 107,074,243 (+)NCBIGRCm37mm9NCBIm37
MGSCv368107,429,936 - 107,439,472 (+)NCBImm8
Celera8108,773,242 - 108,782,734 (+)NCBICelera
Cytogenetic Map8D3NCBI
Car7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.219429,063 - 438,478 (-)NCBI
Rnor_6.0 Ensembl19636,545 - 645,937 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.019636,545 - 645,935 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.019630,356 - 639,746 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.419365,680 - 375,074 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.119365,695 - 375,513 (-)NCBI
Celera19424,600 - 433,992 (-)NCBICelera
Cytogenetic Map19p14NCBI
Ca7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543323,365,718 - 23,374,548 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543323,365,832 - 23,374,517 (+)NCBIChiLan1.0ChiLan1.0
CA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11666,262,259 - 66,272,316 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1666,262,362 - 66,271,665 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01647,161,021 - 47,170,800 (+)NCBIMhudiblu_PPA_v0panPan3
CA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1582,446,239 - 82,455,445 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl582,446,246 - 82,455,590 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha582,434,936 - 82,444,145 (-)NCBI
ROS_Cfam_1.0582,882,872 - 82,892,083 (-)NCBI
UMICH_Zoey_3.1582,706,026 - 82,715,234 (-)NCBI
UNSW_CanFamBas_1.0582,392,889 - 82,402,094 (-)NCBI
UU_Cfam_GSD_1.0583,031,862 - 83,041,073 (-)NCBI
CA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl627,548,706 - 27,563,861 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1627,548,647 - 27,563,966 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CA7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1552,541,008 - 52,551,307 (+)NCBI
ChlSab1.1 Ensembl552,541,527 - 52,551,389 (+)Ensembl
Ca7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474619,640,436 - 19,648,708 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005318269   ⟹   XP_005318326
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934942,469,000 - 42,477,123 (-)NCBI
SpeTri2.0NW_00493647517,112,004 - 17,120,105 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040279547   ⟹   XP_040135481
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934942,469,000 - 42,476,944 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005318326 (Get FASTA)   NCBI Sequence Viewer  
  XP_040135481 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005318326   ⟸   XM_005318269
- Peptide Label: isoform X2
- UniProtKB: I3NB03 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040135481   ⟸   XM_040279547
- Peptide Label: isoform X1
Protein Domains
Alpha-carbonic anhydrase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021436 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000021550 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022556 UniProtKB/TrEMBL
Gene3D-CATH 3.10.200.10 UniProtKB/TrEMBL
InterPro alpha_CA_VII UniProtKB/TrEMBL
  Carbonic_anhydrase_a UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class_CS UniProtKB/TrEMBL
  Carbonic_anhydrase_a_sf UniProtKB/TrEMBL
NCBI Gene Ca7 ENTREZGENE
PANTHER PTHR18952 UniProtKB/TrEMBL
Pfam Carb_anhydrase UniProtKB/TrEMBL
PROSITE ALPHA_CA_1 UniProtKB/TrEMBL
  ALPHA_CA_2 UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/TrEMBL
Superfamily-SCOP SSF51069 UniProtKB/TrEMBL
UniProt I3NB03 ENTREZGENE, UniProtKB/TrEMBL