Tpd52l1 (TPD52 like 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Tpd52l1 (TPD52 like 1) Rattus norvegicus
Analyze
Symbol: Tpd52l1
Name: TPD52 like 1
RGD ID: 1594796
Description: Predicted to enable protein homodimerization activity. Predicted to be involved in G2/M transition of mitotic cell cycle and positive regulation of signal transduction. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in cytoplasm. Orthologous to human TPD52L1 (TPD52 like 1); INTERACTS WITH (S)-colchicine; 1,3-dinitrobenzene; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC689256; similar to Tumor protein D53 (mD53) (Tumor protein D52-like 1); tumor protein D52-like 1; tumor protein D53
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8127,991,114 - 28,109,767 (+)NCBIGRCr8
mRatBN7.2126,172,038 - 26,290,704 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl126,172,170 - 26,291,109 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx125,926,100 - 26,044,645 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0131,925,924 - 32,044,471 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0126,126,704 - 26,245,258 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0128,454,949 - 28,578,736 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl128,454,966 - 28,576,553 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0129,910,205 - 30,031,364 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4126,788,964 - 26,951,930 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera124,866,465 - 24,984,680 (+)NCBICelera
Cytogenetic Map1p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(S)-colchicine  (EXP)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (EXP,ISO)
amitrole  (EXP)
arsenous acid  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butan-1-ol  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
carmustine  (ISO)
chlorohydrocarbon  (EXP)
choline  (ISO)
cidofovir anhydrous  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
corticosterone  (EXP)
coumarin  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
daidzein  (ISO)
DDE  (ISO)
desferrioxamine B  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ferric ammonium citrate  (ISO)
folic acid  (ISO)
genistein  (ISO)
glycidyl methacrylate  (ISO)
ibuprofen  (ISO)
indometacin  (ISO)
isobutanol  (ISO)
isotretinoin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
lithium chloride  (ISO)
mercury dibromide  (ISO)
methimazole  (EXP)
methylmercury chloride  (EXP,ISO)
N-acetyl-1,4-benzoquinone imine  (ISO)
nickel atom  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
scopolamine  (EXP)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (EXP,ISO)
vincristine  (EXP)
vorinostat  (ISO)
XL147  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9484778   PMID:12477932   PMID:12963375   PMID:14761963   PMID:16112108  


Genomics

Comparative Map Data
Tpd52l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8127,991,114 - 28,109,767 (+)NCBIGRCr8
mRatBN7.2126,172,038 - 26,290,704 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl126,172,170 - 26,291,109 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx125,926,100 - 26,044,645 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0131,925,924 - 32,044,471 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0126,126,704 - 26,245,258 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0128,454,949 - 28,578,736 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl128,454,966 - 28,576,553 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0129,910,205 - 30,031,364 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4126,788,964 - 26,951,930 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera124,866,465 - 24,984,680 (+)NCBICelera
Cytogenetic Map1p11NCBI
TPD52L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386125,153,773 - 125,264,407 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6125,119,049 - 125,264,407 (+)EnsemblGRCh38hg38GRCh38
GRCh376125,474,919 - 125,585,553 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366125,516,578 - 125,626,343 (+)NCBINCBI36Build 36hg18NCBI36
Build 346125,516,577 - 125,626,343NCBI
Celera6126,219,917 - 126,329,682 (+)NCBICelera
Cytogenetic Map6q22.31NCBI
HuRef6123,051,499 - 123,161,419 (+)NCBIHuRef
CHM1_16125,738,369 - 125,848,402 (+)NCBICHM1_1
T2T-CHM13v2.06126,342,146 - 126,452,806 (+)NCBIT2T-CHM13v2.0
Tpd52l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391031,208,369 - 31,321,989 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1031,208,372 - 31,321,954 (-)EnsemblGRCm39 Ensembl
GRCm381031,332,373 - 31,445,987 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1031,332,376 - 31,445,958 (-)EnsemblGRCm38mm10GRCm38
MGSCv371031,052,186 - 31,165,727 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361031,021,796 - 31,135,337 (-)NCBIMGSCv36mm8
Celera1032,258,878 - 32,370,418 (-)NCBICelera
Cytogenetic Map10A4NCBI
cM Map1017.36NCBI
Tpd52l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554366,602,051 - 6,671,978 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554366,648,140 - 6,672,474 (+)NCBIChiLan1.0ChiLan1.0
TPD52L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25145,149,691 - 145,259,099 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16143,053,193 - 143,162,916 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06122,943,780 - 123,053,201 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16127,062,800 - 127,172,174 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6127,062,573 - 127,172,174 (+)Ensemblpanpan1.1panPan2
TPD52L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1164,165,833 - 64,216,851 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl164,125,934 - 64,216,787 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha164,930,142 - 65,027,093 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0164,327,601 - 64,424,695 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl164,327,490 - 64,425,075 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1164,259,124 - 64,356,043 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0164,045,704 - 64,142,576 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0164,697,325 - 64,794,111 (+)NCBIUU_Cfam_GSD_1.0
Tpd52l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946114,174,715 - 114,265,718 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366394,152,240 - 4,244,463 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366394,153,418 - 4,244,427 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TPD52L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl137,667,150 - 37,761,760 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1137,667,476 - 37,761,670 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2141,422,463 - 41,470,262 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TPD52L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11348,450,068 - 48,559,488 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1348,450,058 - 48,559,504 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604020,761,404 - 20,869,804 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tpd52l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247986,282,025 - 6,309,243 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247986,281,542 - 6,359,480 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tpd52l1
546 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:70
Interacting mature miRNAs:75
Transcripts:ENSRNOT00000030327
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11620621049268520Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)11543162149361612Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)11543162149361612Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)11148148232355910Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)12076315844095856Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat

Markers in Region
D1Got363  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2126,246,780 - 26,246,927 (+)MAPPERmRatBN7.2
Rnor_6.0128,532,247 - 28,532,393NCBIRnor6.0
Rnor_5.0129,987,507 - 29,987,653UniSTSRnor5.0
RGSC_v3.4126,907,538 - 26,907,684UniSTSRGSC3.4
Cytogenetic Map1p11UniSTS
AW524699  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2126,263,078 - 26,263,271 (+)MAPPERmRatBN7.2
Rnor_6.0128,548,908 - 28,549,100NCBIRnor6.0
Rnor_5.0130,003,872 - 30,004,064UniSTSRnor5.0
RGSC_v3.4126,923,724 - 26,923,916UniSTSRGSC3.4
Celera124,957,447 - 24,957,639UniSTS
Cytogenetic Map1p11UniSTS
BF404401  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2126,281,873 - 26,282,070 (+)MAPPERmRatBN7.2
Rnor_6.0128,567,708 - 28,567,904NCBIRnor6.0
Rnor_5.0130,022,486 - 30,022,682UniSTSRnor5.0
RGSC_v3.4126,942,284 - 26,942,480UniSTSRGSC3.4
Celera124,975,930 - 24,976,126UniSTS
RH 3.4 Map1275.4UniSTS
Cytogenetic Map1p11UniSTS
BF412420  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2126,192,099 - 26,192,219 (+)MAPPERmRatBN7.2
Rnor_6.0128,478,845 - 28,478,964NCBIRnor6.0
Rnor_5.0129,934,105 - 29,934,224UniSTSRnor5.0
RGSC_v3.4126,808,998 - 26,809,117UniSTSRGSC3.4
Celera124,886,517 - 24,886,636UniSTS
RH 3.4 Map1306.49UniSTS
Cytogenetic Map1p11UniSTS
AU047402  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2126,270,757 - 26,270,990 (+)MAPPERmRatBN7.2
Rnor_6.0128,556,592 - 28,556,824NCBIRnor6.0
Rnor_5.0130,011,370 - 30,011,602UniSTSRnor5.0
RGSC_v3.4126,931,168 - 26,931,400UniSTSRGSC3.4
Celera124,964,813 - 24,965,045UniSTS
Cytogenetic Map1p11UniSTS
RH136796  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2126,290,426 - 26,290,601 (+)MAPPERmRatBN7.2
Rnor_6.0128,576,277 - 28,576,451NCBIRnor6.0
Rnor_5.0130,031,087 - 30,031,261UniSTSRnor5.0
RGSC_v3.4126,951,653 - 26,951,827UniSTSRGSC3.4
Celera124,984,403 - 24,984,577UniSTS
RH 3.4 Map1273.0UniSTS
Cytogenetic Map1p11UniSTS
RH140170  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2126,290,193 - 26,290,373 (+)MAPPERmRatBN7.2
Rnor_6.0128,576,044 - 28,576,223NCBIRnor6.0
Rnor_5.0130,030,854 - 30,031,033UniSTSRnor5.0
RGSC_v3.4126,951,420 - 26,951,599UniSTSRGSC3.4
Celera124,984,170 - 24,984,349UniSTS
Cytogenetic Map1p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000030327   ⟹   ENSRNOP00000035722
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl126,172,170 - 26,291,109 (+)Ensembl
Rnor_6.0 Ensembl128,455,051 - 28,576,553 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000078841   ⟹   ENSRNOP00000074667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl126,172,170 - 26,290,094 (+)Ensembl
Rnor_6.0 Ensembl128,454,966 - 28,576,261 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094990   ⟹   ENSRNOP00000087430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl126,172,170 - 26,279,946 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096217   ⟹   ENSRNOP00000076601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl126,172,170 - 26,291,109 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107523   ⟹   ENSRNOP00000082009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl126,172,170 - 26,291,109 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114799   ⟹   ENSRNOP00000093458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl126,257,794 - 26,286,507 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116457   ⟹   ENSRNOP00000090569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl126,172,170 - 26,291,109 (+)Ensembl
RefSeq Acc Id: NM_001044295   ⟹   NP_001037760
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8127,991,235 - 28,109,767 (+)NCBI
mRatBN7.2126,172,170 - 26,290,704 (+)NCBI
Rnor_6.0128,455,051 - 28,576,554 (+)NCBI
Rnor_5.0129,910,205 - 30,031,364 (+)NCBI
RGSC_v3.4126,788,964 - 26,951,930 (+)RGD
Celera124,866,465 - 24,984,680 (+)RGD
Sequence:
RefSeq Acc Id: XM_006227737   ⟹   XP_006227799
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8127,991,114 - 28,109,763 (+)NCBI
mRatBN7.2126,172,059 - 26,290,700 (+)NCBI
Rnor_6.0128,454,950 - 28,578,736 (+)NCBI
Rnor_5.0129,910,205 - 30,031,364 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006227739   ⟹   XP_006227801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8127,991,133 - 28,109,763 (+)NCBI
mRatBN7.2126,172,038 - 26,290,700 (+)NCBI
Rnor_6.0128,454,949 - 28,578,736 (+)NCBI
Rnor_5.0129,910,205 - 30,031,364 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008758674   ⟹   XP_008756896
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8127,991,114 - 28,109,763 (+)NCBI
mRatBN7.2126,172,060 - 26,290,700 (+)NCBI
Rnor_6.0128,454,951 - 28,578,736 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039091345   ⟹   XP_038947273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8127,991,131 - 28,109,286 (+)NCBI
mRatBN7.2126,172,056 - 26,290,223 (+)NCBI
RefSeq Acc Id: XM_063274594   ⟹   XP_063130664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8127,991,133 - 28,109,286 (+)NCBI
RefSeq Acc Id: XM_063274598   ⟹   XP_063130668
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8127,991,135 - 28,109,763 (+)NCBI
RefSeq Acc Id: NP_001037760   ⟸   NM_001044295
- UniProtKB: Q499Q2 (UniProtKB/TrEMBL),   A0A0G2K8M7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006227801   ⟸   XM_006227739
- Peptide Label: isoform X1
- UniProtKB: F7FE56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006227799   ⟸   XM_006227737
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008756896   ⟸   XM_008758674
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AAC3 (UniProtKB/TrEMBL),   A6JUR6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000035722   ⟸   ENSRNOT00000030327
Ensembl Acc Id: ENSRNOP00000074667   ⟸   ENSRNOT00000078841
RefSeq Acc Id: XP_038947273   ⟸   XM_039091345
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K8M7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000093458   ⟸   ENSRNOT00000114799
Ensembl Acc Id: ENSRNOP00000090569   ⟸   ENSRNOT00000116457
Ensembl Acc Id: ENSRNOP00000082009   ⟸   ENSRNOT00000107523
Ensembl Acc Id: ENSRNOP00000087430   ⟸   ENSRNOT00000094990
Ensembl Acc Id: ENSRNOP00000076601   ⟸   ENSRNOT00000096217
RefSeq Acc Id: XP_063130664   ⟸   XM_063274594
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063130668   ⟸   XM_063274598
- Peptide Label: isoform X6
- UniProtKB: A0A8I5XV74 (UniProtKB/TrEMBL),   A6JUR7 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K8M7-F1-model_v2 AlphaFold A0A0G2K8M7 1-209 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689541
Promoter ID:EPDNEW_R65
Type:single initiation site
Name:Tpd52l1_1
Description:tumor protein D52-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0128,455,066 - 28,455,126EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1594796 AgrOrtholog
BioCyc Gene G2FUF-61985 BioCyc
Ensembl Genes ENSRNOG00000021478 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030327.4 UniProtKB/TrEMBL
  ENSRNOT00000078841.2 UniProtKB/TrEMBL
  ENSRNOT00000094990.1 UniProtKB/TrEMBL
  ENSRNOT00000096217.1 UniProtKB/TrEMBL
  ENSRNOT00000107523.1 UniProtKB/TrEMBL
  ENSRNOT00000114799.1 UniProtKB/TrEMBL
  ENSRNOT00000116457.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5621894 IMAGE-MGC_LOAD
InterPro TPD52 UniProtKB/TrEMBL
KEGG Report rno:689256 UniProtKB/TrEMBL
MGC_CLONE MGC:124774 IMAGE-MGC_LOAD
NCBI Gene 689256 ENTREZGENE
PANTHER TPD52 UniProtKB/TrEMBL
  TUMOR PROTEIN D53 UniProtKB/TrEMBL
Pfam TPD52 UniProtKB/TrEMBL
PhenoGen Tpd52l1 PhenoGen
RatGTEx ENSRNOG00000021478 RatGTEx
UniProt A0A0G2K8M7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5XV74 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A5U0_RAT UniProtKB/TrEMBL
  A0A8I6AAC3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AJ07_RAT UniProtKB/TrEMBL
  A6JUR6 ENTREZGENE, UniProtKB/TrEMBL
  A6JUR7 ENTREZGENE, UniProtKB/TrEMBL
  F7FE56 ENTREZGENE, UniProtKB/TrEMBL
  Q499Q2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-08-21 Tpd52l1  TPD52 like 1  Tpd52l1  tumor protein D52-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Tpd52l1  tumor protein D52-like 1  LOC689256  similar to Tumor protein D53 (mD53) (Tumor protein D52-like 1)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC689256  similar to Tumor protein D53 (mD53) (Tumor protein D52-like 1)      Symbol and Name status set to provisional 70820 PROVISIONAL