Ddx19b (DEAD-box helicase 19B) - Rat Genome Database

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Gene: Ddx19b (DEAD-box helicase 19B) Rattus norvegicus
Analyze
Symbol: Ddx19b
Name: DEAD-box helicase 19B
RGD ID: 1593382
Description: Predicted to enable RNA helicase activity and mRNA binding activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be located in nuclear envelope. Predicted to be active in cytoplasmic stress granule and nucleus. Orthologous to several human genes including DDX19B (DEAD-box helicase 19B); PARTICIPATES IN NXF1-NXT1 export pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ATP-dependent RNA helicase DDX19B; DEAD (Asp-Glu-Ala-As) box polypeptide 19B; DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B; LOC690693; similar to DDX19 homolog; Zd10a; zinc responsive protein Zd10A; zinc responsive protein ZD10B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81955,877,567 - 55,910,134 (-)NCBIGRCr8
mRatBN7.21938,968,215 - 38,998,907 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1938,968,215 - 38,997,259 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1945,772,703 - 45,798,431 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01946,426,046 - 46,451,774 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01948,736,974 - 48,762,706 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01943,217,199 - 43,246,196 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1943,217,161 - 43,275,287 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01954,067,897 - 54,072,633 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01954,045,135 - 54,061,405 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41940,924,875 - 40,947,452 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1938,360,365 - 38,385,589 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Postage for the messenger: designating routes for nuclear mRNA export. Natalizio BJ and Wente SR, Trends Cell Biol. 2013 Aug;23(8):365-73. doi: 10.1016/j.tcb.2013.03.006. Epub 2013 Apr 11.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:15361827   PMID:19056867   PMID:19946888  


Genomics

Comparative Map Data
Ddx19b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81955,877,567 - 55,910,134 (-)NCBIGRCr8
mRatBN7.21938,968,215 - 38,998,907 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1938,968,215 - 38,997,259 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1945,772,703 - 45,798,431 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01946,426,046 - 46,451,774 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01948,736,974 - 48,762,706 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01943,217,199 - 43,246,196 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1943,217,161 - 43,275,287 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01954,067,897 - 54,072,633 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01954,045,135 - 54,061,405 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41940,924,875 - 40,947,452 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1938,360,365 - 38,385,589 (-)NCBICelera
Cytogenetic Map19q12NCBI
DDX19B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381670,289,767 - 70,335,305 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1670,289,663 - 70,335,305 (+)EnsemblGRCh38hg38GRCh38
GRCh371670,323,670 - 70,369,208 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361668,890,573 - 68,925,232 (+)NCBINCBI36Build 36hg18NCBI36
Build 341668,890,598 - 68,925,230NCBI
Celera1655,160,454 - 55,195,108 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1656,156,341 - 56,200,270 (+)NCBIHuRef
CHM1_11671,731,134 - 71,775,217 (+)NCBICHM1_1
T2T-CHM13v2.01676,100,775 - 76,146,326 (+)NCBIT2T-CHM13v2.0
Ddx19b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398111,729,818 - 111,758,383 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8111,729,820 - 111,758,383 (-)EnsemblGRCm39 Ensembl
GRCm388111,003,186 - 111,031,751 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8111,003,188 - 111,031,751 (-)EnsemblGRCm38mm10GRCm38
MGSCv378113,527,088 - 113,551,664 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368113,889,863 - 113,914,439 (-)NCBIMGSCv36mm8
Celera8115,227,150 - 115,251,693 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map857.88NCBI
Ddx19b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554843,120,480 - 3,137,917 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554843,120,480 - 3,137,917 (+)NCBIChiLan1.0ChiLan1.0
LOC100984626
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21883,831,985 - 83,871,412 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11689,760,567 - 89,806,986 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01654,683,291 - 54,718,133 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11670,131,115 - 70,167,548 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1670,126,833 - 70,167,548 (+)Ensemblpanpan1.1panPan2
DDX19B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1576,314,675 - 76,336,318 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl576,314,725 - 76,364,587 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha576,276,509 - 76,298,134 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0576,751,096 - 76,772,739 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl576,725,513 - 76,802,090 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1576,573,320 - 76,594,990 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0576,396,617 - 76,418,072 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0576,888,426 - 76,910,065 (+)NCBIUU_Cfam_GSD_1.0
DDX19B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl613,325,351 - 13,359,459 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1613,328,241 - 13,358,139 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2613,239,713 - 13,271,120 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103233156
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1553,438,552 - 53,480,623 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl553,443,037 - 53,481,987 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604716,225,728 - 16,268,284 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ddx19b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474612,569,331 - 12,587,821 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474612,569,308 - 12,592,168 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ddx19b
134 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat

Markers in Region
RH131624  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21938,971,605 - 38,971,825 (-)MAPPERmRatBN7.2
Rnor_6.01943,242,586 - 43,242,805NCBIRnor6.0
Rnor_5.01954,069,023 - 54,069,242UniSTSRnor5.0
RGSC_v3.41940,924,196 - 40,924,415UniSTSRGSC3.4
Celera1938,363,756 - 38,363,975UniSTS
RH 3.4 Map31367.1UniSTS
Cytogenetic Map19q12UniSTS
RH142652  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21938,972,546 - 38,972,846 (-)MAPPERmRatBN7.2
Rnor_6.01943,241,565 - 43,241,864NCBIRnor6.0
Rnor_5.01954,068,002 - 54,068,301UniSTSRnor5.0
RGSC_v3.41940,925,137 - 40,925,436UniSTSRGSC3.4
Celera1938,364,697 - 38,364,996UniSTS
RH 3.4 Map19476.6UniSTS
Cytogenetic Map19q12UniSTS
AI144819  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21938,943,355 - 38,943,560 (-)MAPPERmRatBN7.2
mRatBN7.21938,972,937 - 38,973,156 (-)MAPPERmRatBN7.2
Rnor_6.01943,241,255 - 43,241,473NCBIRnor6.0
RGSC_v3.41940,925,528 - 40,925,746UniSTSRGSC3.4
Celera1938,365,088 - 38,365,306UniSTS
RH 3.4 Map19475.6UniSTS
Cytogenetic Map19q12UniSTS
RH139434  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21938,968,362 - 38,968,570 (-)MAPPERmRatBN7.2
mRatBN7.21938,968,362 - 38,968,525 (-)MAPPERmRatBN7.2
Rnor_6.01943,245,886 - 43,246,048NCBIRnor6.0
Rnor_6.01943,245,841 - 43,246,048NCBIRnor6.0
Rnor_5.01954,072,323 - 54,072,485UniSTSRnor5.0
Rnor_5.01954,072,278 - 54,072,485UniSTSRnor5.0
RGSC_v3.41940,920,953 - 40,921,115UniSTSRGSC3.4
RGSC_v3.41940,920,953 - 40,921,160UniSTSRGSC3.4
Celera1938,360,513 - 38,360,720UniSTS
Celera1938,360,513 - 38,360,675UniSTS
RH 3.4 Map19482.1UniSTS
Cytogenetic Map19q12UniSTS
SHGC-60774  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21938,944,508 - 38,944,634 (-)MAPPERmRatBN7.2
mRatBN7.21938,974,104 - 38,974,230 (-)MAPPERmRatBN7.2
Rnor_6.01943,240,181 - 43,240,306NCBIRnor6.0
Rnor_6.01943,269,728 - 43,269,853NCBIRnor6.0
Rnor_5.01954,097,981 - 54,098,106UniSTSRnor5.0
Cytogenetic Map19q12UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000024793   ⟹   ENSRNOP00000024793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1938,942,502 - 38,962,854 (-)Ensembl
Rnor_6.0 Ensembl1943,251,539 - 43,271,865 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000082566   ⟹   ENSRNOP00000071135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1943,217,161 - 43,275,287 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000084462   ⟹   ENSRNOP00000069097
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1938,968,215 - 38,993,835 (-)Ensembl
Rnor_6.0 Ensembl1943,220,576 - 43,241,297 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087474   ⟹   ENSRNOP00000074386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1938,942,496 - 38,960,868 (-)Ensembl
Rnor_6.0 Ensembl1943,220,576 - 43,270,841 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091788   ⟹   ENSRNOP00000070488
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1938,943,235 - 38,962,854 (-)Ensembl
Rnor_6.0 Ensembl1943,220,508 - 43,241,536 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094677   ⟹   ENSRNOP00000090537
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1938,968,215 - 38,997,194 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118121   ⟹   ENSRNOP00000083150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1938,968,215 - 38,997,259 (-)Ensembl
RefSeq Acc Id: NM_001005895   ⟹   NP_001005895
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81955,877,567 - 55,903,310 (-)NCBI
mRatBN7.21938,968,215 - 38,993,958 (-)NCBI
Rnor_6.01943,220,445 - 43,246,196 (+)NCBI
Rnor_5.01954,045,135 - 54,061,405 (+)NCBI
Rnor_5.01954,067,897 - 54,072,633 (+)NCBI
Celera1938,360,365 - 38,385,589 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008772534   ⟹   XP_008770756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81955,877,569 - 55,906,651 (-)NCBI
mRatBN7.21938,968,217 - 38,997,234 (-)NCBI
Rnor_6.01943,217,199 - 43,246,194 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098000   ⟹   XP_038953928
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81955,877,569 - 55,908,276 (-)NCBI
mRatBN7.21938,968,217 - 38,998,907 (-)NCBI
RefSeq Acc Id: XM_063278291   ⟹   XP_063134361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81955,877,569 - 55,901,094 (-)NCBI
RefSeq Acc Id: XM_063278292   ⟹   XP_063134362
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81955,877,569 - 55,910,134 (-)NCBI
RefSeq Acc Id: NP_001005895   ⟸   NM_001005895
- UniProtKB: Q5XLP8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770756   ⟸   XM_008772534
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GAE6 (UniProtKB/TrEMBL),   A0A8I6ADW1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069097   ⟸   ENSRNOT00000084462
Ensembl Acc Id: ENSRNOP00000071135   ⟸   ENSRNOT00000082566
Ensembl Acc Id: ENSRNOP00000074386   ⟸   ENSRNOT00000087474
Ensembl Acc Id: ENSRNOP00000024793   ⟸   ENSRNOT00000024793
Ensembl Acc Id: ENSRNOP00000070488   ⟸   ENSRNOT00000091788
RefSeq Acc Id: XP_038953928   ⟸   XM_039098000
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JY21 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000083150   ⟸   ENSRNOT00000118121
Ensembl Acc Id: ENSRNOP00000090537   ⟸   ENSRNOT00000094677
RefSeq Acc Id: XP_063134362   ⟸   XM_063278292
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063134361   ⟸   XM_063278291
- Peptide Label: isoform X2
Protein Domains
DEAD-box RNA helicase Q   Helicase ATP-binding   Helicase C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JZQ1-F1-model_v2 AlphaFold A0A0G2JZQ1 1-492 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701149
Promoter ID:EPDNEW_R11665
Type:multiple initiation site
Name:Ddx19b_3
Description:DEAD-box helicase 19B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11666  EPDNEW_R11667  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01943,217,214 - 43,217,274EPDNEW
RGD ID:13701142
Promoter ID:EPDNEW_R11666
Type:initiation region
Name:Ddx19b_1
Description:DEAD-box helicase 19B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11667  EPDNEW_R11665  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01943,220,453 - 43,220,513EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593382 AgrOrtholog
BioCyc Gene G2FUF-5669 BioCyc
Ensembl Genes ENSRNOG00000018033 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000064019 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000084462.2 UniProtKB/TrEMBL
  ENSRNOT00000087474.2 UniProtKB/TrEMBL
  ENSRNOT00000091788.2 UniProtKB/TrEMBL
  ENSRNOT00000094677.1 UniProtKB/TrEMBL
  ENSRNOT00000118121.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  6.10.250.2170 UniProtKB/TrEMBL
InterPro DEAD-like_N UniProtKB/TrEMBL
  DNA/RNA_helicase_DEAD/DEAH_N UniProtKB/TrEMBL
  helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  RNA_helicase_DEAD_Q_motif UniProtKB/TrEMBL
KEGG Report rno:690693 UniProtKB/TrEMBL
NCBI Gene 690693 ENTREZGENE
PANTHER ATP-DEPENDENT RNA HELICASE DBP3 UniProtKB/TrEMBL
  ATP-DEPENDENT RNA HELICASE DDX19A UniProtKB/TrEMBL
  ATP-DEPENDENT RNA HELICASE DDX19B UniProtKB/TrEMBL
Pfam DEAD UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
PhenoGen Ddx19b PhenoGen
PROSITE HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  Q_MOTIF UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018033 RatGTEx
  ENSRNOG00000064019 RatGTEx
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2JUH2_RAT UniProtKB/TrEMBL
  A0A0G2JY21 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K7X6_RAT UniProtKB/TrEMBL
  A0A8I6ADW1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GAE6 ENTREZGENE, UniProtKB/TrEMBL
  Q5XLP8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-13 Ddx19b  DEAD-box helicase 19B  Ddx19b  DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-01 Ddx19b  DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B  Ddx19b  DEAD (Asp-Glu-Ala-As) box polypeptide 19B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-23 Ddx19b  DEAD (Asp-Glu-Ala-As) box polypeptide 19B  LOC690693  similar to DDX19 homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC690693  similar to DDX19 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL