Ccdc40 (coiled-coil domain 40 molecular ruler complex subunit) - Rat Genome Database

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Gene: Ccdc40 (coiled-coil domain 40 molecular ruler complex subunit) Rattus norvegicus
Analyze
Symbol: Ccdc40
Name: coiled-coil domain 40 molecular ruler complex subunit
RGD ID: 1592118
Description: Predicted to be involved in several processes, including axonemal dynein complex assembly; determination of left/right symmetry; and protein localization to cilium. Predicted to act upstream of or within several processes, including cilium assembly; flagellated sperm motility; and regulation of cilium beat frequency. Predicted to be located in axoneme. Predicted to be active in cytoplasm and motile cilium. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 15. Orthologous to human CCDC40 (coiled-coil domain 40 molecular ruler complex subunit); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; alpha-Zearalanol; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: coiled-coil domain containing 40; coiled-coil domain-containing protein 40; LOC287867; similar to myosin, heavy polypeptide 9, non-muscle
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810104,985,283 - 105,025,813 (+)NCBIGRCr8
mRatBN7.210104,486,748 - 104,527,284 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10104,486,748 - 104,527,243 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10109,589,799 - 109,630,004 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010109,052,821 - 109,093,030 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010104,407,383 - 104,447,874 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010108,055,270 - 108,393,408 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10108,340,240 - 108,372,862 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010107,952,498 - 108,005,242 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10103,034,282 - 103,075,071 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axoneme  (ISO)
cilium  (IBA,ISO)
cytoplasm  (IBA,ISO)
extracellular region  (IEA)
motile cilium  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15632090   PMID:21131974   PMID:22499950   PMID:22693285   PMID:23255504   PMID:26387594   PMID:27120127   PMID:28182636  


Genomics

Comparative Map Data
Ccdc40
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810104,985,283 - 105,025,813 (+)NCBIGRCr8
mRatBN7.210104,486,748 - 104,527,284 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10104,486,748 - 104,527,243 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10109,589,799 - 109,630,004 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010109,052,821 - 109,093,030 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010104,407,383 - 104,447,874 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010108,055,270 - 108,393,408 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10108,340,240 - 108,372,862 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010107,952,498 - 108,005,242 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10103,034,282 - 103,075,071 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
CCDC40
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381780,036,642 - 80,100,613 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1780,036,632 - 80,100,613 (+)EnsemblGRCh38hg38GRCh38
GRCh371778,010,441 - 78,074,412 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361775,625,030 - 75,689,007 (+)NCBINCBI36Build 36hg18NCBI36
Celera1774,636,488 - 74,703,213 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1773,449,820 - 73,515,509 (+)NCBIHuRef
CHM1_11778,096,772 - 78,160,740 (+)NCBICHM1_1
T2T-CHM13v2.01780,935,298 - 81,001,052 (+)NCBIT2T-CHM13v2.0
Ccdc40
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911119,119,328 - 119,156,074 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11119,119,398 - 119,156,064 (+)EnsemblGRCm39 Ensembl
GRCm3811119,228,490 - 119,265,248 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11119,228,572 - 119,265,238 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711119,089,886 - 119,126,526 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611119,044,662 - 119,081,302 (+)NCBIMGSCv36mm8
Celera11130,973,426 - 131,010,143 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1183.35NCBI
Ccdc40
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555062,784,548 - 2,838,026 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555062,783,837 - 2,840,248 (-)NCBIChiLan1.0ChiLan1.0
CCDC40
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21996,095,461 - 96,162,320 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117100,923,838 - 100,990,612 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01774,120,483 - 74,187,323 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11779,656,287 - 79,722,565 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1779,656,287 - 79,722,565 (+)Ensemblpanpan1.1panPan2
CCDC40
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.191,616,029 - 1,656,043 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl91,601,121 - 1,656,597 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha92,255,872 - 2,295,889 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.092,248,199 - 2,288,210 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl92,248,126 - 2,288,772 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.192,271,699 - 2,311,715 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.092,397,017 - 2,437,019 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.092,478,324 - 2,518,346 (-)NCBIUU_Cfam_GSD_1.0
Ccdc40
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056022,287,072 - 2,324,087 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365944,089,214 - 4,124,153 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365944,075,105 - 4,124,850 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC40
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl122,341,957 - 2,384,025 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1122,341,953 - 2,384,066 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2122,412,095 - 2,453,627 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC40
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11672,004,087 - 72,061,889 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607743,303,242 - 43,367,106 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc40
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248019,160,805 - 9,217,756 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248019,160,852 - 9,217,033 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccdc40
449 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:50
Interacting mature miRNAs:53
Transcripts:ENSRNOT00000071618
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1064890616107211142Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)90404397107211142Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)90404397107211142Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1090404397107211142Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1090404397107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1090404397107211142Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090404397107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1088539139107211142Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1096703043107057807Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087307617107211142Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090627439107211142Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1090627439107057807Rat
631539Oia6Oil induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1097010147104670812Rat
631538Oia5Oil induced arthritis QTL 5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087055121107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1096703043107057807Rat

Markers in Region
D10Rat1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera10103,065,114 - 103,065,263UniSTS
SHRSP x BN Map1092.8099RGD
SHRSP x BN Map1092.8099UniSTS
FHH x ACI Map1092.4099RGD
Cytogenetic Map10q32.3UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 2 36 107 44 49 18 24 18 6 147 74 93 44 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000077535   ⟹   ENSRNOP00000069245
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10104,487,998 - 104,527,243 (+)Ensembl
Rnor_6.0 Ensembl10108,340,240 - 108,372,862 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000084845   ⟹   ENSRNOP00000070213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10104,486,811 - 104,527,243 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104773   ⟹   ENSRNOP00000095356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10104,486,748 - 104,527,243 (+)Ensembl
RefSeq Acc Id: NM_001134688   ⟹   NP_001128160
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810104,985,283 - 105,025,774 (+)NCBI
mRatBN7.210104,486,748 - 104,527,243 (+)NCBI
Rnor_6.010108,055,270 - 108,393,408 (+)NCBI
Rnor_5.010107,952,498 - 108,005,242 (+)NCBI
Celera10103,034,282 - 103,075,071 (+)RGD
Sequence:
RefSeq Acc Id: XM_039085685   ⟹   XP_038941613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810104,985,302 - 105,025,813 (+)NCBI
mRatBN7.210104,486,782 - 104,527,284 (+)NCBI
RefSeq Acc Id: XM_039085686   ⟹   XP_038941614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810104,985,302 - 105,025,813 (+)NCBI
mRatBN7.210104,486,782 - 104,526,476 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001128160 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941613 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941614 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM06779 (Get FASTA)   NCBI Sequence Viewer  
  EDM06780 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000069245.2
  ENSRNOP00000070213.2
  ENSRNOP00000095356.1
RefSeq Acc Id: NP_001128160   ⟸   NM_001134688
- UniProtKB: A6HL74 (UniProtKB/TrEMBL),   A0A0G2JUV5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069245   ⟸   ENSRNOT00000077535
RefSeq Acc Id: XP_038941613   ⟸   XM_039085685
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXB9 (UniProtKB/TrEMBL),   A0A0G2JUV5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038941614   ⟸   XM_039085686
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANF0 (UniProtKB/TrEMBL),   A0A0G2JUV5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000070213   ⟸   ENSRNOT00000084845
Ensembl Acc Id: ENSRNOP00000095356   ⟸   ENSRNOT00000104773

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JXB9-F1-model_v2 AlphaFold A0A0G2JXB9 1-186 view protein structure
AF-A0A0G2JUV5-F1-model_v2 AlphaFold A0A0G2JUV5 1-1025 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1592118 AgrOrtholog
BioCyc Gene G2FUF-22497 BioCyc
Ensembl Genes ENSRNOG00000059401 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000077535.2 UniProtKB/TrEMBL
  ENSRNOT00000084845.2 UniProtKB/TrEMBL
  ENSRNOT00000104773.1 UniProtKB/TrEMBL
InterPro CCDC40 UniProtKB/TrEMBL
KEGG Report rno:287867 UniProtKB/TrEMBL
NCBI Gene 287867 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 40 UniProtKB/TrEMBL
  PTHR16275 UniProtKB/TrEMBL
Pfam BRE1 UniProtKB/TrEMBL
PhenoGen Ccdc40 PhenoGen
RatGTEx ENSRNOG00000059401 RatGTEx
UniProt A0A0G2JUV5 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JXB9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ANF0 ENTREZGENE, UniProtKB/TrEMBL
  A6HL74 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-01-08 Ccdc40  coiled-coil domain 40 molecular ruler complex subunit  Ccdc40  coiled-coil domain containing 40  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Ccdc40  coiled-coil domain containing 40  LOC287867  similar to myosin, heavy polypeptide 9, non-muscle  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC287867  similar to myosin, heavy polypeptide 9, non-muscle      Symbol and Name status set to provisional 70820 PROVISIONAL