D10Rat1 Marker Search Result - Rat Genome Database

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Marker: D10Rat1

Symbol: D10Rat1
Previously known as: R0045-C09; oxsts5894; R045-C09; 
RGD ID: 36986
Expected Size: 161 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera10103,065,114 - 103,065,263UniSTS
SHRSP x BN Map1092.8099UniSTS
SHRSP x BN Map1092.8099RGD
FHH x ACI Map1092.4099RGD
Cytogenetic Map10q32.3UniSTS
Is Marker For: Strains:   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BUF/Pit   DA/PitN   IS/Kyo   MHS/Gib   WKY/OlaHsd   WTC/Kyo   LOU/CHan   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   OKA/Wsl   P5C   PVG/Pit   SHR/OlaHsd   SHRSP/Riv   GK/KyoSwe   ACI/N   BN-Lx/Cub   GH/Omr   COP/OlaHsd  
Genes:   Ccdc40  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CCTGGACTTTGGTATGTGCA
Reverse Primer CTGGTGTCTTCGGAGGTAGG
 
Template 
CNGCAGGTTCGANTCCNAGAGGATCCCCCCTCCTGGTTTCAGAGAGAATACATGGAGAATGTAT
CCAGCAGGAGCCCAGTGTCTCCTGGACTTTGGTATGTGCACAAGGGCATGCTGAGCCCTGGGCA
GAGGTGGGGTTTCTGTCACACACACACACACACACACACACACACACACACACACACACACACA
CACAACTAAAACTGCTGTGCCTCTGACACTGCCTCTCCTACCTCCGAAGACACCAGATCATGCT
CTGGGAGAAAAAAATCCAACTGGCCAAGGAGATGCGCAGGGGTACCGAGCTCGAATTCGTAATC
ATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATNCGCTCACAATTCCACACAACATNTGNNCG
GANC

Region

Nucleotide Sequences
GenBank Nucleotide CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 287867 UniSTS
UniSTS 226270 UniSTS