Rps3-ps5 (ribosomal protein S3, pseudogene 5) - Rat Genome Database

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Gene: Rps3-ps5 (ribosomal protein S3, pseudogene 5) Rattus norvegicus
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Symbol: Rps3-ps5
Name: ribosomal protein S3, pseudogene 5
RGD ID: 1590854
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: ENSRNOG00000067165; LOC364602; similar to 40S ribosomal protein S3
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81659,345,355 - 59,346,068 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.21652,641,885 - 52,642,629 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1652,641,885 - 52,642,322 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1652,641,885 - 52,642,322 (+)NCBImRatBN7.2
Rnor_6.01655,834,404 - 55,835,117 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01655,538,530 - 55,539,243 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41656,186,803 - 56,187,516 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1650,530,252 - 50,530,965 (+)NCBICelera
Cytogenetic Map16q12.1NCBI
JBrowse:




References

Genomics

Variants

.
Variants in Rps3-ps5
6 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164445512389455123Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)163692878281928782Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)164199206486992064Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421266955197Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162846870173468701Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164909919691442908Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)163236104377361043Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)163105803976058039Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)163439829479398294Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)163188527176885271Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164445512389455123Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161773081872536785Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)161590580260905802Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000116519
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1652,641,885 - 52,642,322 (+)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-11237 BioCyc
Ensembl Genes ENSRNOG00000067165 Ensembl
NCBI Gene 364602 ENTREZGENE
PhenoGen Rps3-ps5 PhenoGen
RatGTEx ENSRNOG00000067165 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Rps3-ps5  ribosomal protein S3, pseudogene 5  LOC364602  similar to 40S ribosomal protein S3  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC364602  similar to 40S ribosomal protein S3  ENSRNOG00000067165    Data merged from RGD:150343486 737654 PROVISIONAL
2021-08-31 ENSRNOG00000067165        Symbol and Name status set to provisional 45752 PROVISIONAL
2006-11-20 LOC364602  similar to 40S ribosomal protein S3      Symbol and Name status set to provisional 70820 PROVISIONAL