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Gene: Muc15 (mucin 15, cell surface associated) Rattus norvegicus

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Symbol:

Muc15

Name:

mucin 15, cell surface associated

RGD ID:

1589864

Description:

Predicted to be located in membrane. Orthologous to human MUC15 (mucin 15, cell surface associated); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; paracetamol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC690914; mucin 15; mucin-15; similar to mucin 15

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MUC15 (mucin 15, cell surface associated)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Muc15 (mucin 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Muc15 (mucin 15, cell surface associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MUC15 (mucin 15, cell surface associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MUC15 (mucin 15, cell surface associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Muc15 (mucin 15, cell surface associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MUC15 (mucin 15, cell surface associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MUC15 (mucin 15, cell surface associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Muc15 (mucin 15, cell surface associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MUC15 (mucin 15, cell surface associated)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Muc15 (mucin 15)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-98n17.5	Alliance	DIOPT (Hieranoid\|InParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	117,749,161 - 117,761,466 (+)	NCBI		GRCr8
mRatBN7.2	3	97,294,728 - 97,308,641 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	97,294,783 - 97,307,090 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	100,860,095 - 100,872,213 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	109,459,062 - 109,471,184 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	107,217,398 - 107,229,517 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	101,895,363 - 101,912,979 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	101,899,068 - 101,912,919 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	108,497,240 - 108,509,565 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	96,181,642 - 96,193,771 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	96,302,393 - 96,314,524 (+)	NCBI		Celera
Cytogenetic Map	3	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

dystonia (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

avobenzone (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dorsomorphin (ISO)

mercury dibromide (ISO)

nickel atom (ISO)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

paracetamol (EXP)

phenylmercury acetate (ISO)

quercetin (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

troglitazone (EXP)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

membrane (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Muc15
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	117,749,161 - 117,761,466 (+)	NCBI		GRCr8
mRatBN7.2	3	97,294,728 - 97,308,641 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	97,294,783 - 97,307,090 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	100,860,095 - 100,872,213 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	109,459,062 - 109,471,184 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	107,217,398 - 107,229,517 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	101,895,363 - 101,912,979 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	101,899,068 - 101,912,919 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	108,497,240 - 108,509,565 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	96,181,642 - 96,193,771 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	96,302,393 - 96,314,524 (+)	NCBI		Celera
Cytogenetic Map	3	q34	NCBI

MUC15
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	26,559,032 - 26,572,263 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	26,559,032 - 26,572,263 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	26,580,579 - 26,593,810 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	26,538,428 - 26,550,356 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	26,538,427 - 26,550,356	NCBI
Celera	11	26,725,946 - 26,739,174 (-)	NCBI		Celera
Cytogenetic Map	11	p14.2	NCBI
HuRef	11	26,277,438 - 26,290,660 (-)	NCBI		HuRef
CHM1_1	11	26,579,573 - 26,592,788 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	26,699,699 - 26,712,907 (-)	NCBI		T2T-CHM13v2.0

Muc15
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	110,551,839 - 110,569,882 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	110,551,685 - 110,569,872 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	110,721,494 - 110,739,537 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	110,721,340 - 110,739,527 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	110,561,765 - 110,578,120 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	110,522,447 - 110,538,802 (+)	NCBI		MGSCv36	mm8
Celera	2	111,874,743 - 111,898,297 (+)	NCBI		Celera
Cytogenetic Map	2	E3	NCBI
cM Map	2	56.75	NCBI

Muc15
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955476	5,986,725 - 6,000,864 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955476	5,988,557 - 6,000,191 (-)	NCBI	ChiLan1.0	ChiLan1.0

MUC15
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	28,762,326 - 28,767,504 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	28,761,865 - 28,774,285 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	26,514,388 - 26,527,567 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	26,415,525 - 26,428,716 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	26,415,525 - 26,422,409 (-)	Ensembl	panpan1.1		panPan2

MUC15
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	47,349,412 - 47,362,174 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	47,350,825 - 47,362,149 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	46,836,717 - 46,849,474 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	48,485,903 - 48,498,666 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	48,488,020 - 48,498,650 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	47,472,437 - 47,485,196 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	47,639,246 - 47,652,020 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	48,225,363 - 48,238,123 (-)	NCBI		UU_Cfam_GSD_1.0

Muc15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	37,349,342 - 37,359,668 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936540	6,501,796 - 6,513,849 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MUC15
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	33,686,036 - 33,699,489 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	33,685,075 - 33,699,492 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	36,290,247 - 36,302,929 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MUC15
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	38,511,694 - 38,527,520 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	38,514,141 - 38,527,461 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	135,835,536 - 135,848,639 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Muc15
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624766	16,531,845 - 16,544,246 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624766	16,531,981 - 16,544,488 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Muc15
131 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	58
Count of miRNA genes:	49
Interacting mature miRNAs:	57
Transcripts:	ENSRNOT00000006256
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	115665732	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582219	Bw63	Body weight QTL 63	3.8	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	3	96127817	115665732	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	64655305	115665732	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	64655305	115665732	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	84091273	129091273	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	50437504	115638231	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	73376539	118376539	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	91797474	136797474	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	80800231	114297550	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	97084464	142084464	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	89772419	134772419	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	30356773	98535386	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	41874578	104104347	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
1582252	Sual1	Serum uric acid level QTL 1	3.4	0.0123	blood uric acid amount (VT:0010302)	blood uric acid level (CMO:0000501)	3	96127817	102200699	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	104104347	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	95735366	140735366	Rat

Markers in Region

D3Mco33

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	97,298,165 - 97,298,391 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	101,902,509 - 101,902,734	NCBI	Rnor6.0
Rnor_5.0	3	108,500,649 - 108,500,874	UniSTS	Rnor5.0
RGSC_v3.4	3	96,185,024 - 96,185,250	RGD	RGSC3.4
RGSC_v3.4	3	96,185,025 - 96,185,250	UniSTS	RGSC3.4
RGSC_v3.1	3	96,081,452 - 96,081,678	RGD
Celera	3	96,305,776 - 96,306,001	UniSTS
Cytogenetic Map	3	q33-q34	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
8	10	16	61	54	53	22	24	22	6	141	62	41	41	52	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001044301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006256 ⟹ ENSRNOP00000006256

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	97,294,783 - 97,307,090 (+)	Ensembl
Rnor_6.0 Ensembl	3	101,899,126 - 101,911,247 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079600 ⟹ ENSRNOP00000070909

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	101,899,068 - 101,912,919 (+)	Ensembl

RefSeq Acc Id:

NM_001044301 ⟹ NP_001037766

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	117,749,339 - 117,761,466 (+)	NCBI
mRatBN7.2	3	97,294,783 - 97,306,915 (+)	NCBI
Rnor_6.0	3	101,899,126 - 101,911,253 (+)	NCBI
Rnor_5.0	3	108,497,240 - 108,509,565 (+)	NCBI
RGSC_v3.4	3	96,181,642 - 96,193,771 (+)	RGD
Celera	3	96,302,393 - 96,314,524 (+)	RGD

Sequence:

show sequence

TGCAAAGACTACTCAAAGTACTCAAGTACTCAAGTTTTGCCTGGAATATTAGCTACATGAATGA
CTGAGCTTTAATTGACAAAAGTAAACAAATAAACCCATCTACATTCGGAAGATTCCTCATATTA
AAACCAATATCAACGAAGGCTACCATGTTGACCTTAGCCAAAATTGCATTGATTTCAAGTCTGT
TCATTTCATTACCATTTGGGAGACCTCAGAAACAAAATCTAAGAAGAAATGTAACTCAGCACAC
TATAGAAGATGTGAAAACAATGAGAAACAAATCGATTCATTTGGAAAGAAGAATAAATGCAACT
TCAGAAAACAGAAGTGATATCTCCAATCTCATGGTGACGGCTCCTTCTCTTTTGGATTTATCCA
CAACCTTCAAAGCAACAAATTCCAGCAGAAACTTTCCAACAGCTAGTTCAACTGAGAGTCCAAA
ACCTCCCTCCACACATTCCATTCCTCCCTTGGTTCAGGGCTTTGTTTCCAAGTTGCCTTTGAAC
TCATCCGTAGCCGATGTAAATCCTTTACAGGTCTCAGAACATTCCAATTCTACACATTCTCCAT
TGTCGGGAAATTTTACTTGGTCTTTGGACAATGACACAATGAACAGTCCTAAAGATATGTCCAG
TACAGTTAGCCTCTTCCCTCCTCCTCCAAAGACCACACCCGTGACTCCTTTCACAGCTGAACCT
AATGGATGGTTTGGCACAAATGACAACTTTGCTGGTTTTACCCCATATCAAGAAAAAACAACTT
TACAGCCTACCTTAAAATTCACCAATAATTCAAAACTTTTCCCCAATGCATCAGACACCCCAAA
AGAGACTAAGAACACAGGGATAGTATTTGGAGCCATTTTAGGAGCTATCCTGGGTGCTTCTCTG
CTTAGCCTTGTTGGCTACTTATTGTGTGGACAACGGAAAACAGATTCATTTTCCCATCAGCGAC
TTTATGATGACAGAAACGAACCAGTTCTGCGATTAGACAATGCACCAGAACCTTATGATGTCAA
TTTTGGAAATTCTAGTTACTACAACCGAGCTGTGAGTGATTCATCCATGCCTGAAGGGGGAGAA
AGTGCGCATGATAGCATTCCCATGGATGCCATACCTCCACTTCGCACCTCCATGTAAAGCTAGG
AGAGAAGGAGGGCTGCAGAGGGGAAGAGTTCATCTCCATTTCGACCTTTCATCATGCAAGAGGT
CCTGCAAGGTCACTGCCATGCTGCTTGCACAGAGAATACTGCAGAGGCAGGAGTTGTGCAGGAA
AAAGCAGGGTGGATCCGTCATCTAGAAGCATTCTTTCCTTACAGTCCTCAGCTGAGCTGAAGCA
TGTGTTATATAACCATAATTTGTATTTTGGTTTATTTTCCAAGGAAACCTTTGTGAAATACGGT
AAAATTAATGCAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006234695 ⟹ XP_006234757

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	117,749,285 - 117,761,466 (+)	NCBI
mRatBN7.2	3	97,294,728 - 97,308,641 (+)	NCBI
Rnor_6.0	3	101,898,984 - 101,912,979 (+)	NCBI
Rnor_5.0	3	108,497,240 - 108,509,565 (+)	NCBI

Sequence:

show sequence

GAGAGAGTGTGTGTTTGAGTACAAATAGAATTTCTAACTTCTCATGCTTCTAAACCTTTATATA
ATAAGAGAGTTCTAGAACATAATTTCTTATATTCTCATTAATGTGGCTTTAGAGAAGATACTCA
GTGCTGACCAAAATTGCAAAGACTACTCAAAGTACTCAAGTACTCAAGTTTTGCCTGGAATATT
AGCTACATGAATGACTGAGCTTTAATTGACAAAAGTAAACAAATAAACCCATCTACATTCGGAA
GGCCACCCCTGGAAAGGGTCATTTGATCCTCAAAGAGGTCATGACCAACACTGCATTGCAGGGA
TAATGTGACATTTAATTGATACCAAATGGAGATTCCTCATATTAAAACCAATATCAACGAAGGC
TACCATGTTGACCTTAGCCAAAATTGCATTGATTTCAAGTCTGTTCATTTCATTACCATTTGGG
AGACCTCAGAAACAAAATCTAAGAAGAAATGTAACTCAGCACACTATAGAAGATGTGAAAACAA
TGAGAAACAAATCGATTCATTTGGAAAGAAGAATAAATGCAACTTCAGAAAACAGAAGTGATAT
CTCCAATCTCATGGTGACGGCTCCTTCTCTTTTGGATTTATCCACAACCTTCAAAGCAACAAAT
TCCAGCAGAAACTTTCCAACAGCTAGTTCAACTGAGAGTCCAAAACCTCCCTCCACACATTCCA
TTCCTCCCTTGGTTCAGGGCTTTGTTTCCAAGTTGCCTTTGAACTCATCCGTAGCCGATGTAAA
TCCTTTACAGGTCTCAGAACATTCCAATTCTACACATTCTCCATTGTCGGGAAATTTTACTTGG
TCTTTGGACAATGACACAATGAACAGTCCTAAAGATATGTCCAGTACAGTTAGCCTCTTCCCTC
CTCCTCCAAAGACCACACCCGTGACTCCTTTCACAGCTGAACCTAATGGATGGTTTGGCACAAA
TGACAACTTTGCTGGTTTTACCCCATATCAAGAAAAAACAACTTTACAGCCTACCTTAAAATTC
ACCAATAATTCAAAACTTTTCCCCAATGCATCAGACACCCCAAAAGAGACTAAGAACACAGGGA
TAGTATTTGGAGCCATTTTAGGAGCTATCCTGGGTGCTTCTCTGCTTAGCCTTGTTGGCTACTT
ATTGTGTGGACAACGGAAAACAGATTCATTTTCCCATCAGCGACTTTATGATGACAGAAACGAA
CCAGTTCTGCGATTAGACAATGCACCAGAACCTTATGATGTCAATTTTGGAAATTCTAGTTACT
ACAACCGAGCTGTGAGTGATTCATCCATGCCTGAAGGGGGAGAAAGTGCGCATGATAGCATTCC
CATGGATGCCATACCTCCACTTCGCACCTCCATGTAAAGCTAGGAGAGAAGGAGGGCTGCAGAG
GGGAAGAGTTCATCTCCATTTCGACCTTTCATCATGCAAGAGGTCCTGCAAGGTCACTGCCATG
CTGCTTGCACAGAGAATACTGCAGAGGCAGGAGTTGTGCAGGAAAAAGCAGGGTGGATCCGTCA
TCTAGAAGCATTCTTTCCTTACAGTCCTCAGCTGAGCTGAAGCATGTGTTATATAACCATAATT
TGTATTTTGGTTTATTTTCCAAGGAAACCTTTGTGAAATACGGTAAAATTAATGCAAATCACCA
TGGTAGCACTGACTGATAACTTAACAATAACCCTTCTTCACACAAAATCTGGGAACCCAAACTA
GATTTTCTTTAAATAGTTTGTTTTTAAACAGGAAACTGGAGTTAACTCTTCTTTCCTCTTGTCT
ATAATCCAGGACCACAGAATAAAACAGGCATTTTCATGGGAGCAAATTTTTTGCTGGTTTGTTT
CAAAGCCAGGAATATGATATGGCAGAATTCCTGGTCCTGAGAAATTAAGGCAATAAGAACGAAA
AGCTTGTCTTCTAATACATTTCATTCTTCTGCAATAGCACACATGGTCAGTCCCTTCCGCCGGC
AAGTTGACAATGGGGGCATTTAACAGGGCCACAGGAAGAAAACTGACTCTACTAGGAAAGTGAT
ATCTTCCCTGAAAGTCCTCAAAGTTTTAAGCAACTTCAGCTTGCATGAGTACACATCAGGTTTC
AGTTAATTAGGCACGTTAGAATCTCAACTGGAAACATGAGGACAAGACTGAGGAATATACTTGT
ACATAGTATGAATTTAACTTGTTAGCTAGAAATAGAATTTGCAGTACATTGTAAATGTACAGTC
ATATGTGAAATAGCTGTCCCTCCAAAGGTTTGAATGAAGCACAGAGCAAAATAGCAAAGAGAGT
TAATAAGCAAATGCATCATCACTTGAACAAGTAAAGATTCAAGAGACTTAATTCTGGTTTTAGT
TTGTTTCCCATCAATACTTGTCTTTGAGCCTCCAAGGTTAGAGGATTAAATAGAGCTAAATACC
CAAGGAGTGAATTTATGAACAAAGTAAGTATTATCTTAAAGGTTTTATTATTGAATCAATACCT
GGTATGAGTGGCACTTACATGTGCACTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGCATGTGTGCATGTGTGTAGCACAGAAACCACTGTTAGAAAGACAGTTGTAAAATGAG
TAAAGAAAGAAAATACTCACCCCATATTGCCATAAAAATAGCGAAGAAGACTGTCCCTCCATTA
TCAAACAAATATGTTACCTTAATAAAAGAAATAGAAACATTAATCATAGTAATGGTTGTACTAA
AAGAGAAGTTATTATTTGCATTAGGTACTGTGGTTTCTCCCCAGGTTCCATCACATTTTTTCAT
AGTCTATTGACCTGGAACCTTCACAGTCTTCCAGTAGCTTATATAATTTCCTCACAGGATGAGT
TGAGGAAACAACAGGTTTTTCTTCTCTCTTCCCTCTGATTCCTTTGTATCCCACTTTCATCTTG
GCTTTTAAGTTGTTCTAGATTCCCAAAAAAGCCATTTTGCATTACAGTTGAACACACAAAGACT
GAAATGTAAGATGTTAGTGTGTAAGTTAAAACATAACAAGTTTTGTTTCGTGTTGTTTCCAGTT
AGAGAAAGTTCCCAGAACAGGGAAGTTCTAAAACAGAACTCTGATAGTGAGCTACCTTTTAAAA
TTGAAAGCTGTCATAGTAATTCCTGATCTTTTATGTTTTGCAAAATGTGCCATGGGTCCAGTTG
TGATTTATTTAATGTAATTAGTTTCATTTTAAGTTGTTTCAAGATGTTTTATAAATCATTAAGC
ATATTTTAATCAGTTGTTACTTTATGTAAAGCTTGATAAAGGATGTAAAGTTATTCAATGTTGT
ACAATATAATTTTAGAATTACAAGTATTGATAGATAGATTTTAATAAAATTCAAATTTA

hide sequence

RefSeq Acc Id:

XM_039105889 ⟹ XP_038961817

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	117,749,161 - 117,761,466 (+)	NCBI
mRatBN7.2	3	97,294,728 - 97,306,701 (+)	NCBI

RefSeq Acc Id:

XM_063284587 ⟹ XP_063140657

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	117,749,284 - 117,761,466 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001037766	(Get FASTA)	NCBI Sequence Viewer
	XP_006234757	(Get FASTA)	NCBI Sequence Viewer
	XP_038961817	(Get FASTA)	NCBI Sequence Viewer
	XP_063140657	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83925	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006256.5

RefSeq Acc Id:	NP_001037766 ⟸ NM_001044301
- Peptide Label:	precursor
- UniProtKB:	Q5XHX5 (UniProtKB/TrEMBL), A6HP19 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLTLAKIALISSLFISLPFGRPQKQNLRRNVTQHTIEDVKTMRNKSIHLERRINATSENRSDIS NLMVTAPSLLDLSTTFKATNSSRNFPTASSTESPKPPSTHSIPPLVQGFVSKLPLNSSVADVNP LQVSEHSNSTHSPLSGNFTWSLDNDTMNSPKDMSSTVSLFPPPPKTTPVTPFTAEPNGWFGTND NFAGFTPYQEKTTLQPTLKFTNNSKLFPNASDTPKETKNTGIVFGAILGAILGASLLSLVGYLL CGQRKTDSFSHQRLYDDRNEPVLRLDNAPEPYDVNFGNSSYYNRAVSDSSMPEGGESAHDSIPM DAIPPLRTSM hide sequence

RefSeq Acc Id:	XP_006234757 ⟸ XM_006234695
- Peptide Label:	isoform X1
- UniProtKB:	Q5XHX5 (UniProtKB/TrEMBL), A6HP19 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLTLAKIALISSLFISLPFGRPQKQNLRRNVTQHTIEDVKTMRNKSIHLERRINATSENRSDIS NLMVTAPSLLDLSTTFKATNSSRNFPTASSTESPKPPSTHSIPPLVQGFVSKLPLNSSVADVNP LQVSEHSNSTHSPLSGNFTWSLDNDTMNSPKDMSSTVSLFPPPPKTTPVTPFTAEPNGWFGTND NFAGFTPYQEKTTLQPTLKFTNNSKLFPNASDTPKETKNTGIVFGAILGAILGASLLSLVGYLL CGQRKTDSFSHQRLYDDRNEPVLRLDNAPEPYDVNFGNSSYYNRAVSDSSMPEGGESAHDSIPM DAIPPLRTSM hide sequence

Ensembl Acc Id:

ENSRNOP00000006256 ⟸ ENSRNOT00000006256

Ensembl Acc Id:

ENSRNOP00000070909 ⟸ ENSRNOT00000079600

RefSeq Acc Id:	XP_038961817 ⟸ XM_039105889
- Peptide Label:	isoform X2
- UniProtKB:	F7EK02 (UniProtKB/TrEMBL), A6HP19 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140657 ⟸ XM_063284587
- Peptide Label:	isoform X2
- UniProtKB:	F7EK02 (UniProtKB/TrEMBL), A6HP19 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XHX5-F1-model_v2	AlphaFold	Q5XHX5	1-330	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692289

Promoter ID:

EPDNEW_R2810

Type:

single initiation site

Name:

Muc15_1

Description:

mucin 15, cell surface associated

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	101,899,111 - 101,899,171	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1589864	AgrOrtholog
BioCyc Gene	G2FUF-48461	BioCyc
Ensembl Genes	ENSRNOG00000004703	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000006256.6	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7135360	IMAGE-MGC_LOAD
InterPro	Mucin-15	UniProtKB/TrEMBL
KEGG Report	rno:690914	UniProtKB/TrEMBL
MGC_CLONE	MGC:95326	IMAGE-MGC_LOAD
NCBI Gene	690914	ENTREZGENE
PANTHER	MUCIN-15	UniProtKB/TrEMBL
	PTHR45427	UniProtKB/TrEMBL
Pfam	Mucin15	UniProtKB/TrEMBL
PhenoGen	Muc15	PhenoGen
RatGTEx	ENSRNOG00000004703	RatGTEx
UniProt	A6HP19	ENTREZGENE, UniProtKB/TrEMBL
	F7EK02	ENTREZGENE, UniProtKB/TrEMBL
	Q5XHX5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-08-29	Muc15	mucin 15, cell surface associated	Muc15	mucin 15	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Muc15	mucin 15	LOC690914	similar to mucin 15	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC690914	similar to mucin 15	LOC687476	similar to mucin 15	Data merged from RGD:1585329	1643240	APPROVED
2006-11-20	LOC690914	similar to mucin 15			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC687476	similar to mucin 15			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar