Rab11fip1 (RAB11 family interacting protein 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Rab11fip1 (RAB11 family interacting protein 1) Rattus norvegicus
Analyze
Symbol: Rab11fip1
Name: RAB11 family interacting protein 1
RGD ID: 1562965
Description: Predicted to enable small GTPase binding activity. Predicted to be involved in negative regulation of adiponectin secretion and regulated exocytosis. Predicted to be located in cytosol. Predicted to be active in intracellular membrane-bounded organelle. Orthologous to human RAB11FIP1 (RAB11 family interacting protein 1); PARTICIPATES IN endocytosis pathway; INTERACTS WITH alpha-Zearalanol; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC498650; rab-coupling protein; RAB11 family interacting protein 1 (class I); rab11 family-interacting protein 1; Rab11-FIP1; RGD1562965; similar to Rab coupling protein isoform 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81671,589,753 - 71,620,341 (+)NCBIGRCr8
mRatBN7.21664,886,902 - 64,917,491 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1664,884,676 - 64,917,491 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1670,170,643 - 70,201,300 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01673,576,982 - 73,607,639 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01668,822,278 - 68,852,874 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01669,048,739 - 69,079,332 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1669,046,514 - 69,079,332 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01668,718,377 - 68,753,634 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41669,209,995 - 69,236,520 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1662,807,908 - 62,837,627 (+)NCBICelera
Cytogenetic Map16q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
actinomycin D  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
butyric acid  (ISO)
C60 fullerene  (EXP)
caffeine  (ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
Dibutyl phosphate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
ethylbenzene  (ISO)
FR900359  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
lipopolysaccharide  (ISO)
menadione  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
Nutlin-3  (ISO)
panobinostat  (ISO)
perfluorooctanoic acid  (EXP)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
testosterone  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
toluene  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:20810886   PMID:22206666   PMID:24040321  


Genomics

Comparative Map Data
Rab11fip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81671,589,753 - 71,620,341 (+)NCBIGRCr8
mRatBN7.21664,886,902 - 64,917,491 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1664,884,676 - 64,917,491 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1670,170,643 - 70,201,300 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01673,576,982 - 73,607,639 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01668,822,278 - 68,852,874 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01669,048,739 - 69,079,332 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1669,046,514 - 69,079,332 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01668,718,377 - 68,753,634 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41669,209,995 - 69,236,520 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1662,807,908 - 62,837,627 (+)NCBICelera
Cytogenetic Map16q12.3NCBI
RAB11FIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38837,858,618 - 37,899,497 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl837,858,618 - 37,899,497 (-)EnsemblGRCh38hg38GRCh38
GRCh37837,716,136 - 37,757,015 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36837,835,628 - 37,876,161 (-)NCBINCBI36Build 36hg18NCBI36
Build 34837,837,342 - 37,876,161NCBI
Celera836,668,048 - 36,708,783 (-)NCBICelera
Cytogenetic Map8p11.23NCBI
HuRef836,250,993 - 36,291,526 (-)NCBIHuRef
CHM1_1837,917,911 - 37,958,467 (-)NCBICHM1_1
T2T-CHM13v2.0838,135,023 - 38,175,900 (-)NCBIT2T-CHM13v2.0
Rab11fip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39827,628,801 - 27,664,707 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl827,628,801 - 27,664,674 (-)EnsemblGRCm39 Ensembl
GRCm38827,138,773 - 27,174,646 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl827,138,773 - 27,174,646 (-)EnsemblGRCm38mm10GRCm38
MGSCv37828,249,245 - 28,285,118 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36828,604,709 - 28,640,584 (-)NCBIMGSCv36mm8
Celera828,628,448 - 28,664,915 (-)NCBICelera
Cytogenetic Map8A2NCBI
cM Map815.91NCBI
Rab11fip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546313,565,956 - 13,600,016 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546313,565,956 - 13,600,016 (-)NCBIChiLan1.0ChiLan1.0
RAB11FIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2756,421,663 - 56,460,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1832,138,777 - 32,177,730 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0837,159,466 - 37,200,147 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1834,336,553 - 34,356,333 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl834,336,553 - 34,356,333 (-)Ensemblpanpan1.1panPan2
RAB11FIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11627,503,051 - 27,534,123 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1627,503,113 - 27,531,935 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1628,019,859 - 28,050,864 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01629,402,031 - 29,432,990 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1629,364,073 - 29,432,982 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11627,623,842 - 27,654,836 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01628,201,363 - 28,232,379 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01628,240,666 - 28,271,624 (+)NCBIUU_Cfam_GSD_1.0
Rab11fip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494350,122,680 - 50,154,051 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367101,306,430 - 1,338,502 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB11FIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11548,527,379 - 48,561,408 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RAB11FIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1835,900,452 - 35,934,116 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl835,900,516 - 35,934,034 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660526,065,880 - 6,109,777 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab11fip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247805,710,078 - 5,742,056 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rab11fip1
159 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:557
Count of miRNA genes:268
Interacting mature miRNAs:356
Transcripts:ENSRNOT00000070993
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat

Markers in Region
D16Rat58  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21664,896,259 - 64,896,432 (+)MAPPERmRatBN7.2
Rnor_6.01669,058,102 - 69,058,274NCBIRnor6.0
Rnor_5.01668,734,116 - 68,734,288UniSTSRnor5.0
RGSC_v3.41669,218,407 - 69,218,766RGDRGSC3.4
RGSC_v3.41669,218,593 - 69,218,765UniSTSRGSC3.4
RGSC_v3.11669,218,613 - 69,218,972RGD
Celera1662,816,493 - 62,816,665UniSTS
SHRSP x BN Map1630.54UniSTS
SHRSP x BN Map1630.54RGD
Cytogenetic Map16q12.3-q12.4UniSTS
D16Rat59  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21664,904,774 - 64,904,907 (+)MAPPERmRatBN7.2
Rnor_6.01669,066,617 - 69,066,749NCBIRnor6.0
RGSC_v3.41669,226,980 - 69,227,428RGDRGSC3.4
RGSC_v3.41669,227,077 - 69,227,209UniSTSRGSC3.4
RGSC_v3.11669,227,283 - 69,227,415RGD
RH 3.4 Map16594.7UniSTS
RH 3.4 Map16594.7RGD
RH 2.0 Map16695.5RGD
SHRSP x BN Map1630.54RGD
Cytogenetic Map16q12.3-q12.4UniSTS
BI290060  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21664,914,693 - 64,914,786 (+)MAPPERmRatBN7.2
Rnor_6.01669,076,535 - 69,076,627NCBIRnor6.0
Rnor_5.01668,750,837 - 68,750,929UniSTSRnor5.0
RGSC_v3.41669,236,994 - 69,237,086UniSTSRGSC3.4
Celera1662,834,848 - 62,834,940UniSTS
RH 3.4 Map16594.5UniSTS
Cytogenetic Map16q12.3-q12.4UniSTS
RH140285  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21664,914,165 - 64,914,383 (+)MAPPERmRatBN7.2
Rnor_6.01669,076,007 - 69,076,224NCBIRnor6.0
Rnor_5.01668,750,309 - 68,750,526UniSTSRnor5.0
RGSC_v3.41669,236,466 - 69,236,683UniSTSRGSC3.4
Celera1662,834,320 - 62,834,537UniSTS
RH 3.4 Map16594.5UniSTS
Cytogenetic Map16q12.3-q12.4UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000078128   ⟹   ENSRNOP00000070687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1664,886,902 - 64,917,491 (+)Ensembl
Rnor_6.0 Ensembl1669,048,739 - 69,079,332 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086082   ⟹   ENSRNOP00000073557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1664,886,902 - 64,917,491 (+)Ensembl
Rnor_6.0 Ensembl1669,048,730 - 69,076,456 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1669,069,497 - 69,075,217 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092344   ⟹   ENSRNOP00000075889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1664,884,676 - 64,887,038 (+)Ensembl
Rnor_6.0 Ensembl1669,046,514 - 69,048,876 (+)Ensembl
RefSeq Acc Id: NM_001191555   ⟹   NP_001178484
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81671,589,753 - 71,620,341 (+)NCBI
mRatBN7.21664,886,902 - 64,917,491 (+)NCBI
Rnor_6.01669,048,739 - 69,079,332 (+)NCBI
Rnor_5.01668,718,377 - 68,753,634 (+)NCBI
Celera1662,807,908 - 62,837,627 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001197241   ⟹   NP_001184170
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81671,589,753 - 71,620,341 (+)NCBI
mRatBN7.21664,886,902 - 64,917,491 (+)NCBI
Rnor_6.01669,048,739 - 69,079,332 (+)NCBI
Rnor_5.01668,718,377 - 68,753,634 (+)NCBI
Celera1662,807,908 - 62,837,627 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094778   ⟹   XP_038950706
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81671,590,217 - 71,620,341 (+)NCBI
mRatBN7.21664,887,365 - 64,917,491 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001178484 (Get FASTA)   NCBI Sequence Viewer  
  NP_001184170 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950706 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI07470 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000070687.1
  ENSRNOP00000073557.1
  ENSRNOP00000075889.1
  ENSRNOP00065002531
GenBank Protein Q3B7T9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001178484   ⟸   NM_001191555
- Peptide Label: isoform 1
- UniProtKB: A0A0G2JYK2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001184170   ⟸   NM_001197241
- Peptide Label: isoform 2
- UniProtKB: Q3B7T9 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075889   ⟸   ENSRNOT00000092344
Ensembl Acc Id: ENSRNOP00000070687   ⟸   ENSRNOT00000078128
Ensembl Acc Id: ENSRNOP00000073557   ⟸   ENSRNOT00000086082
RefSeq Acc Id: XP_038950706   ⟸   XM_039094778
- Peptide Label: isoform X1
Protein Domains
C2   FIP-RBD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3B7T9-F1-model_v2 AlphaFold Q3B7T9 1-648 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700152
Promoter ID:EPDNEW_R10676
Type:single initiation site
Name:Rab11fip1_1
Description:RAB11 family interacting protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01669,048,728 - 69,048,788EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562965 AgrOrtholog
BioCyc Gene G2FUF-11034 BioCyc
Ensembl Genes ENSRNOG00000058940 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00065002694 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000078128.2 UniProtKB/TrEMBL
  ENSRNOT00000086082.3 UniProtKB/Swiss-Prot
  ENSRNOT00000092344.2 UniProtKB/TrEMBL
  ENSRNOT00065003648 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.5.2440 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7458514 IMAGE-MGC_LOAD
InterPro C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FIP-RBD_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FIP_classI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab-bd_FIP-RBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:498650 UniProtKB/Swiss-Prot
MGC_CLONE MGC:125251 IMAGE-MGC_LOAD
NCBI Gene 498650 ENTREZGENE
PANTHER PTHR15746 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAB11 FAMILY-INTERACTING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD-FIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rab11fip1 PhenoGen
PROSITE FIP_RBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000058940 RatGTEx
  ENSRNOG00065002694 RatGTEx
SMART SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF144270 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JYK2 ENTREZGENE, UniProtKB/TrEMBL
  A0A0U1RS10_RAT UniProtKB/TrEMBL
  Q3B7T9 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-04 Rab11fip1  RAB11 family interacting protein 1  Rab11fip1  RAB11 family interacting protein 1 (class I)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-16 Rab11fip1   RAB11 family interacting protein 1 (class I)   RGD1562965  similar to Rab coupling protein isoform 3   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562965  similar to Rab coupling protein isoform 3   RGD1562965_predicted  similar to Rab coupling protein isoform 3 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562965_predicted  similar to Rab coupling protein isoform 3 (predicted)  LOC498650  similar to Rab coupling protein isoform 3  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498650  similar to Rab coupling protein isoform 3      Symbol and Name status set to provisional 70820 PROVISIONAL