RAB11FIP1 (RAB11 family interacting protein 1) - Rat Genome Database

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Gene: RAB11FIP1 (RAB11 family interacting protein 1) Pan paniscus
Analyze
Symbol: RAB11FIP1
Name: RAB11 family interacting protein 1
RGD ID: 11944283
Description: ENCODES a protein that exhibits small GTPase binding (inferred); INVOLVED IN negative regulation of adiponectin secretion (inferred); regulated exocytosis (inferred); ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia 54 (ortholog); hypogonadotropic hypogonadism 2 with or without anosmia (ortholog); FOUND IN cytosol (inferred); intracellular membrane-bounded organelle (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: rab11 family-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2756,421,663 - 56,460,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1832,138,777 - 32,177,730 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0837,159,466 - 37,200,147 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1834,336,553 - 34,356,333 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl834,336,553 - 34,356,333 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RAB11FIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2756,421,663 - 56,460,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1832,138,777 - 32,177,730 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0837,159,466 - 37,200,147 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1834,336,553 - 34,356,333 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl834,336,553 - 34,356,333 (-)Ensemblpanpan1.1panPan2
RAB11FIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38837,858,618 - 37,899,497 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl837,858,618 - 37,899,497 (-)EnsemblGRCh38hg38GRCh38
GRCh37837,716,136 - 37,757,015 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36837,835,628 - 37,876,161 (-)NCBINCBI36Build 36hg18NCBI36
Build 34837,837,342 - 37,876,161NCBI
Celera836,668,048 - 36,708,783 (-)NCBICelera
Cytogenetic Map8p11.23NCBI
HuRef836,250,993 - 36,291,526 (-)NCBIHuRef
CHM1_1837,917,911 - 37,958,467 (-)NCBICHM1_1
T2T-CHM13v2.0838,135,023 - 38,175,900 (-)NCBIT2T-CHM13v2.0
Rab11fip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39827,628,801 - 27,664,707 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl827,628,801 - 27,664,674 (-)EnsemblGRCm39 Ensembl
GRCm38827,138,773 - 27,174,646 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl827,138,773 - 27,174,646 (-)EnsemblGRCm38mm10GRCm38
MGSCv37828,249,245 - 28,285,118 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36828,604,709 - 28,640,584 (-)NCBIMGSCv36mm8
Celera828,628,448 - 28,664,915 (-)NCBICelera
Cytogenetic Map8A2NCBI
cM Map815.91NCBI
Rab11fip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81671,589,753 - 71,620,341 (+)NCBIGRCr8
mRatBN7.21664,886,902 - 64,917,491 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1664,884,676 - 64,917,491 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1670,170,643 - 70,201,300 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01673,576,982 - 73,607,639 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01668,822,278 - 68,852,874 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01669,048,739 - 69,079,332 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1669,046,514 - 69,079,332 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01668,718,377 - 68,753,634 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41669,209,995 - 69,236,520 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1662,807,908 - 62,837,627 (+)NCBICelera
Cytogenetic Map16q12.3NCBI
Rab11fip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546313,565,956 - 13,600,016 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546313,565,956 - 13,600,016 (-)NCBIChiLan1.0ChiLan1.0
RAB11FIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11627,503,051 - 27,534,123 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1627,503,113 - 27,531,935 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1628,019,859 - 28,050,864 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01629,402,031 - 29,432,990 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1629,364,073 - 29,432,982 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11627,623,842 - 27,654,836 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01628,201,363 - 28,232,379 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01628,240,666 - 28,271,624 (+)NCBIUU_Cfam_GSD_1.0
Rab11fip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494350,122,680 - 50,154,051 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367101,306,430 - 1,338,502 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB11FIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11548,527,379 - 48,561,408 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RAB11FIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1835,900,452 - 35,934,116 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl835,900,516 - 35,934,034 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660526,065,880 - 6,109,777 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab11fip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247805,710,078 - 5,742,056 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000057580   ⟹   ENSPPAP00000034697
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl834,336,553 - 34,355,771 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000057583   ⟹   ENSPPAP00000034700
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl834,339,171 - 34,356,333 (-)Ensembl
RefSeq Acc Id: XM_034965943   ⟹   XP_034821834
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2756,421,663 - 56,460,618 (-)NCBI
NHGRI_mPanPan1832,138,777 - 32,177,730 (-)NCBI
Mhudiblu_PPA_v0837,159,466 - 37,200,146 (-)NCBI
RefSeq Acc Id: XM_034965944   ⟹   XP_034821835
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2756,432,293 - 56,460,618 (-)NCBI
NHGRI_mPanPan1832,149,406 - 32,177,730 (-)NCBI
Mhudiblu_PPA_v0837,171,816 - 37,200,147 (-)NCBI
RefSeq Acc Id: XM_034965945   ⟹   XP_034821836
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2756,421,663 - 56,460,612 (-)NCBI
NHGRI_mPanPan1832,138,777 - 32,177,722 (-)NCBI
Mhudiblu_PPA_v0837,159,466 - 37,200,140 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034821834 (Get FASTA)   NCBI Sequence Viewer  
  XP_034821835 (Get FASTA)   NCBI Sequence Viewer  
  XP_034821836 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000034697.1
  ENSPPAP00000034700.1
RefSeq Acc Id: XP_034821834   ⟸   XM_034965943
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034821836   ⟸   XM_034965945
- Peptide Label: isoform X3
- UniProtKB: A0A2R9C1P4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034821835   ⟸   XM_034965944
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000034700   ⟸   ENSPPAT00000057583
RefSeq Acc Id: ENSPPAP00000034697   ⟸   ENSPPAT00000057580
Protein Domains
FIP-RBD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040181 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000057580.1 UniProtKB/TrEMBL
  ENSPPAT00000057583.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.2440 UniProtKB/TrEMBL
InterPro FIP-RBD_C_sf UniProtKB/TrEMBL
  FIP_classI UniProtKB/TrEMBL
  Rab-bd_FIP-RBD UniProtKB/TrEMBL
NCBI Gene RAB11FIP1 ENTREZGENE
PANTHER PTHR15746 UniProtKB/TrEMBL
  RAB11 FAMILY-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
Pfam RBD-FIP UniProtKB/TrEMBL
PROSITE FIP_RBD UniProtKB/TrEMBL
Superfamily-SCOP SSF144270 UniProtKB/TrEMBL
UniProt A0A2R9BYE0_PANPA UniProtKB/TrEMBL
  A0A2R9C1P4 ENTREZGENE, UniProtKB/TrEMBL