RAB11FIP1 (RAB11 family interacting protein 1) - Rat Genome Database

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Gene: RAB11FIP1 (RAB11 family interacting protein 1) Chlorocebus sabaeus
Analyze
Symbol: RAB11FIP1
Name: RAB11 family interacting protein 1
RGD ID: 18372407
Description: ENCODES a protein that exhibits small GTPase binding (inferred); INVOLVED IN negative regulation of adiponectin secretion (inferred); regulated exocytosis (inferred); ASSOCIATED WITH hereditary spastic paraplegia 54 (ortholog); hypogonadotropic hypogonadism 2 with or without anosmia (ortholog); paraplegia (ortholog); FOUND IN cytosol (inferred); endosome (inferred); intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: rab11 family-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1835,900,452 - 35,934,116 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl835,900,516 - 35,934,034 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660526,065,880 - 6,109,777 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RAB11FIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1835,900,452 - 35,934,116 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl835,900,516 - 35,934,034 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660526,065,880 - 6,109,777 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RAB11FIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38837,858,618 - 37,899,497 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl837,858,618 - 37,899,497 (-)EnsemblGRCh38hg38GRCh38
GRCh37837,716,136 - 37,757,015 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36837,835,628 - 37,876,161 (-)NCBINCBI36Build 36hg18NCBI36
Build 34837,837,342 - 37,876,161NCBI
Celera836,668,048 - 36,708,783 (-)NCBICelera
Cytogenetic Map8p11.23NCBI
HuRef836,250,993 - 36,291,526 (-)NCBIHuRef
CHM1_1837,917,911 - 37,958,467 (-)NCBICHM1_1
T2T-CHM13v2.0838,135,023 - 38,175,900 (-)NCBIT2T-CHM13v2.0
Rab11fip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39827,628,801 - 27,664,707 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl827,628,801 - 27,664,674 (-)EnsemblGRCm39 Ensembl
GRCm38827,138,773 - 27,174,646 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl827,138,773 - 27,174,646 (-)EnsemblGRCm38mm10GRCm38
MGSCv37828,249,245 - 28,285,118 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36828,604,709 - 28,640,584 (-)NCBIMGSCv36mm8
Celera828,628,448 - 28,664,915 (-)NCBICelera
Cytogenetic Map8A2NCBI
cM Map815.91NCBI
Rab11fip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81671,589,753 - 71,620,341 (+)NCBIGRCr8
mRatBN7.21664,886,902 - 64,917,491 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1664,884,676 - 64,917,491 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1670,170,643 - 70,201,300 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01673,576,982 - 73,607,639 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01668,822,278 - 68,852,874 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01669,048,739 - 69,079,332 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1669,046,514 - 69,079,332 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01668,718,377 - 68,753,634 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41669,209,995 - 69,236,520 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1662,807,908 - 62,837,627 (+)NCBICelera
Cytogenetic Map16q12.3NCBI
Rab11fip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546313,565,956 - 13,600,016 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546313,565,956 - 13,600,016 (-)NCBIChiLan1.0ChiLan1.0
RAB11FIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2756,421,663 - 56,460,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1832,138,777 - 32,177,730 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0837,159,466 - 37,200,147 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1834,336,553 - 34,356,333 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl834,336,553 - 34,356,333 (-)Ensemblpanpan1.1panPan2
RAB11FIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11627,503,051 - 27,534,123 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1627,503,113 - 27,531,935 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1628,019,859 - 28,050,864 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01629,402,031 - 29,432,990 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1629,364,073 - 29,432,982 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11627,623,842 - 27,654,836 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01628,201,363 - 28,232,379 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01628,240,666 - 28,271,624 (+)NCBIUU_Cfam_GSD_1.0
Rab11fip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494350,122,680 - 50,154,051 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367101,306,430 - 1,338,502 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB11FIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11548,527,379 - 48,561,408 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Rab11fip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247805,710,078 - 5,742,056 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000013621   ⟹   ENSCSAP00000011615
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl835,900,516 - 35,934,034 (-)Ensembl
RefSeq Acc Id: XM_037983603   ⟹   XP_037839531
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660526,065,880 - 6,109,767 (+)NCBI
RefSeq Acc Id: XM_037983604   ⟹   XP_037839532
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660526,065,886 - 6,109,777 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037839531 (Get FASTA)   NCBI Sequence Viewer  
  XP_037839532 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000011615.1
Ensembl Acc Id: ENSCSAP00000011615   ⟸   ENSCSAT00000013621
RefSeq Acc Id: XP_037839531   ⟸   XM_037983603
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RSM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839532   ⟸   XM_037983604
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015528 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013621.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  FIP_classI UniProtKB/TrEMBL
KEGG Report csab:103215633 UniProtKB/TrEMBL
NCBI Gene RAB11FIP1 ENTREZGENE
PANTHER PTHR15746 UniProtKB/TrEMBL
  RAB11 FAMILY-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/TrEMBL
SMART SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt A0A0D9RSM6 ENTREZGENE, UniProtKB/TrEMBL