MIR107 (microRNA mir-107) - Rat Genome Database

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Gene: MIR107 (microRNA mir-107) Sus scrofa
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Symbol: MIR107 (Ensembl: ssc-mir-107)
Name: microRNA mir-107 (Ensembl:ssc-mir-107)
RGD ID: 14284241
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA 107; MIRN107; ssc-mir-107
RGD Orthologs
Human
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14101,420,743 - 101,420,829 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.114101,420,743 - 101,420,829 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214110,407,095 - 110,407,181 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




References
Additional References at PubMed
PMID:15885146   PMID:16381832   PMID:18548309   PMID:19196471   PMID:19917043   PMID:21312241   PMID:24499489  


Genomics

Comparative Map Data
MIR107
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14101,420,743 - 101,420,829 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.114101,420,743 - 101,420,829 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214110,407,095 - 110,407,181 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MIR107
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381089,592,747 - 89,592,827 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1089,592,747 - 89,592,827 (-)Ensemblhg38GRCh38
GRCh371091,352,504 - 91,352,584 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361091,342,483 - 91,342,563 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1085,099,321 - 85,099,401 (-)NCBICelera
Cytogenetic Map10q23.31NCBI
HuRef1084,986,456 - 84,986,536 (-)NCBIHuRef
CHM1_11091,634,601 - 91,634,681 (-)NCBICHM1_1
T2T-CHM13v2.01090,476,644 - 90,476,724 (-)NCBIT2T-CHM13v2.0
Mir107
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391934,798,087 - 34,798,173 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1934,798,087 - 34,798,173 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381934,820,687 - 34,820,773 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1934,820,687 - 34,820,773 (-)Ensemblmm10GRCm38
MGSCv371934,895,177 - 34,895,263 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
Celera1935,597,534 - 35,597,620 (-)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1929.79NCBI
Mir107
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81241,750,418 - 241,750,504 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21232,337,767 - 232,337,853 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,337,767 - 232,337,853 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1240,733,793 - 240,733,879 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01247,646,828 - 247,646,914 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01240,485,014 - 240,485,100 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01253,128,250 - 253,128,336 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1253,128,250 - 253,128,336 (-)Ensemblrn6Rnor6.0
Rnor_5.01260,347,511 - 260,347,597 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera1229,451,547 - 229,451,633 (-)NCBICelera
Cytogenetic Map1q53NCBI
MIR107
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1284,484,653 - 4,484,710 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl284,484,646 - 4,484,718 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha284,719,130 - 4,719,187 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0284,706,547 - 4,706,604 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1284,456,978 - 4,457,035 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0284,499,421 - 4,499,478 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0284,635,242 - 4,635,299 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
7 2 7 3 2 7 4 7 2 3 1

Sequence


Ensembl Acc Id: ENSSSCT00000021335
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14101,420,743 - 101,420,829 (-)Ensembl
RefSeq Acc Id: NR_031539
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114101,420,743 - 101,420,829 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000019740 Ensembl, ENTREZGENE
Ensembl Transcript ENSSSCT00000021335 ENTREZGENE
miRBase MI0002449 ENTREZGENE
NCBI Gene MIR107 ENTREZGENE
RNAcentral URS00005743AE RNACentral
  URS000075EC99 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR107  microRNA mir-107    microRNA 107  Symbol and/or name change 5135510 APPROVED