Mir107 (microRNA 107) - Rat Genome Database
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Gene: Mir107 (microRNA 107) Mus musculus
Analyze
Symbol: Mir107
Name: microRNA 107
RGD ID: 1608225
MGI Page MGI
Description: Is expressed in several structures, including branchial arch; central nervous system; embryo mesenchyme; inner ear; and limb bud. Orthologous to human MIR107 (microRNA 107).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-107; Mirn; Mirn107; mmu-mir-1; mmu-mir-107
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391934,798,087 - 34,798,173 (-)NCBIGRCm39mm39
GRCm39 Ensembl1934,798,087 - 34,798,173 (-)Ensembl
GRCm381934,820,687 - 34,820,773 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1934,820,687 - 34,820,773 (-)EnsemblGRCm38mm10GRCm38
MGSCv371934,895,177 - 34,895,263 (-)NCBIGRCm37mm9NCBIm37
Celera1935,597,534 - 35,597,620 (-)NCBICelera
Cytogenetic Map19C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Additional References at PubMed
PMID:11914277   PMID:15634332   PMID:16381832   PMID:16766679   PMID:17369397   PMID:17604727   PMID:17671812   PMID:18452032   PMID:18723672   PMID:18762567   PMID:19559694   PMID:20215419  
PMID:20413612   PMID:20489155   PMID:20548288   PMID:20558326   PMID:20603000   PMID:20668074   PMID:20729113   PMID:21037258   PMID:21179570   PMID:21267068   PMID:21415270   PMID:21628465  
PMID:21654750   PMID:21822254   PMID:21841313   PMID:23074224   PMID:23646144   PMID:23940725   PMID:24205035   PMID:24269082   PMID:24293139   PMID:25639731   PMID:26499439   PMID:29286086  
PMID:30311908   PMID:30543171   PMID:30548623   PMID:33216617  


Genomics

Comparative Map Data
Mir107
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391934,798,087 - 34,798,173 (-)NCBIGRCm39mm39
GRCm39 Ensembl1934,798,087 - 34,798,173 (-)Ensembl
GRCm381934,820,687 - 34,820,773 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1934,820,687 - 34,820,773 (-)EnsemblGRCm38mm10GRCm38
MGSCv371934,895,177 - 34,895,263 (-)NCBIGRCm37mm9NCBIm37
Celera1935,597,534 - 35,597,620 (-)NCBICelera
Cytogenetic Map19C1NCBI
MIR107
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1089,592,747 - 89,592,827 (-)EnsemblGRCh38hg38GRCh38
GRCh381089,592,747 - 89,592,827 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371091,352,504 - 91,352,584 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361091,342,483 - 91,342,563 (-)NCBINCBI36hg18NCBI36
Celera1085,099,321 - 85,099,401 (-)NCBI
Cytogenetic Map10q23.31NCBI
HuRef1084,986,456 - 84,986,536 (-)NCBIHuRef
CHM1_11091,634,601 - 91,634,681 (-)NCBICHM1_1
Mir107
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21232,337,767 - 232,337,853 (-)NCBI
Rnor_6.0 Ensembl1253,128,250 - 253,128,336 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01253,128,250 - 253,128,336 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01260,347,511 - 260,347,597 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1229,451,547 - 229,451,633 (-)NCBICelera
Cytogenetic Map1q53NCBI
MIR107
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl284,484,646 - 4,484,718 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1284,484,653 - 4,484,710 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
MIR107
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14101,420,743 - 101,420,829 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114101,420,743 - 101,420,829 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214110,407,095 - 110,407,181 (-)NCBISscrofa10.2Sscrofa10.2susScr3


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19167640035676563Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19320000035900000Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19334585237345984Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19334585237345984Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19334585237345984Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19334585237345984Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19533596239336106Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19932831543328421Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19981005343810202Mouse
14928311Manh85_mmandible shape 85 (mouse)191193738945937389Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191494561648945738Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191593520749935319Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191593520749935319Mouse
1302004Lfp2_mlong free running period 2 (mouse)Not determined191831776252317981Mouse
1302063Eae19_mexperimental allergic encephalomyelitis 19 (mouse)Not determined191831776252317981Mouse
4142343Moen2_mmodifier of engrailed QTL 2 (mouse)Not determined192025691554257062Mouse
10412251Mnp_mmodifier of Niemann Pick type C1 (mouse)Not determined192025691554257062Mouse
4141659Pbwg20_mpostnatal body weight growth 20 (mouse)Not determined192139025755390480Mouse
1558876W3q14_mweight 3 weeks QTL 14 (mouse)Not determined192233596253923073Mouse
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192500000059000000Mouse
1302123Tlsr8_mthymic lymphoma suppressor region 8 (mouse)Not determined192515863842400477Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192543847859438566Mouse
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192739715561397266Mouse
1357568Tgct4_mtesticular germ cell tumor 4 (mouse)Not determined192779458535317981Mouse
4141138Femwf11_mfemur work to failure 11 (mouse)Not determined2815190961431566Mouse
4141562Pas3b_mpulmonary adenoma susceptibility 3b (mouse)Not determined2977296261431566Mouse
1300683Fembm7_mfemoral bone morphometry 7 (mouse)Not determined193015278561431566Mouse
1301410Cd8mts6_mCD8 memory T cell subset 6 (mouse)Not determined193015279261431566Mouse
1301942Pas13_mpulmonary adenoma susceptibility 13 (mouse)Not determined193015279261431566Mouse
1300856Nobq2_mNew Zealand obese QTL 2 (mouse)Not determined193090944161431566Mouse
1301741Lith2_mlithogenic gene 2 (mouse)Not determined193300371961431566Mouse
1301639Stnn_mstriatal neuron number (mouse)Not determined193396351461431566Mouse
4141019Tgq29_mtriglyceride QTL 29 (mouse)Not determined3460834861431566Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Hif1ammu-miR-107-3pMirtarbaseexternal_infoWestern blotFunctional MTI23074224
Suz12mmu-miR-107-3pOncomiRDBexternal_infoNANA22908280
Aurkaip1mmu-miR-107-3pOncomiRDBexternal_infoNANA22811466
Dapk1mmu-miR-107-3pOncomiRDBexternal_infoNANA22593189
Prkcemmu-miR-107-3pOncomiRDBexternal_infoNANA22158047
Cdk6mmu-miR-107-3pOncomiRDBexternal_infoNANA21264532
Dicer1mmu-miR-107-3pOncomiRDBexternal_infoNANA21029372
Dicer1mmu-miR-107-3pOncomiRDBexternal_infoNANA20603000
Arntmmu-miR-107-3pOncomiRDBexternal_infoNANA20308559
Plag1mmu-miR-107-3pOncomiRDBexternal_infoNANA19692702
Nfiammu-miR-107-3pOncomiRDBexternal_infoNANA17260024

Predicted Targets
Summary Value
Count of predictions:32301
Count of gene targets:11709
Count of transcripts:20547
Interacting mature miRNAs:mmu-miR-107-3p, mmu-miR-107-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083660
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1934,820,687 - 34,820,773 (-)Ensembl
RefSeq Acc Id: NR_029783
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391934,798,087 - 34,798,173 (-)NCBI
GRCm381934,820,687 - 34,820,773 (-)ENTREZGENE
MGSCv371934,895,177 - 34,895,263 (-)RGD
Celera1935,597,534 - 35,597,620 (-)RGD
cM Map19 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3619063 AgrOrtholog
Ensembl Genes ENSMUSG00000065594 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083660 ENTREZGENE
MGD MGI:3619063 ENTREZGENE
miRBase MI0000684 ENTREZGENE
NCBI Gene 723826 ENTREZGENE
PhenoGen Mir107 PhenoGen
RNAcentral URS0000035FEE RNACentral
  URS00005743AE RNACentral
  URS000075DC2E RNACentral