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Gene: RRN3 (RRN3 homolog, RNA polymerase I transcription factor) Sus scrofa

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Symbol:

RRN3

Name:

RRN3 homolog, RNA polymerase I transcription factor

RGD ID:

14274886

Description:

ENCODES a protein that exhibits RNA polymerase binding (inferred); RNA polymerase I core promoter sequence-specific DNA binding (inferred); RNA polymerase I general transcription initiation factor activity (inferred); INVOLVED IN cell population proliferation (ortholog); cytoplasm organization (ortholog); DNA-templated transcription initiation (ortholog); PARTICIPATES IN mTOR signaling pathway; RNA polymerase I transcription pathway; ASSOCIATED WITH Parkinson's disease (ortholog); FOUND IN nucleolus (ortholog); INTERACTS WITH deoxynivalenol

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

RNA polymerase I-specific transcription initiation factor RRN3; RRN3 RNA polymerase I transcription factor homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	7,537,133 - 7,571,992 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	7,537,131 - 7,571,990 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Parkinson's disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell population proliferation (ISO)

cytoplasm organization (ISO)

DNA-templated transcription initiation (ISO)

homeostasis of number of cells (ISO)

in utero embryonic development (ISO)

negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator (ISO)

nucleolus organization (ISO)

positive regulation of DNA-templated transcription (ISO)

positive regulation of neuron projection development (ISO)

regulation of DNA-templated transcription initiation (ISO)

ribosome biogenesis (ISO)

RNA polymerase I preinitiation complex assembly (IEA)

transcription initiation at RNA polymerase I promoter (IBA,IEA,ISO)

translational initiation (IEA)

Cellular Component

nucleolus (IEA,ISO)

nucleus (IBA)

Molecular Function

protein binding (ISO)

RNA polymerase binding (IEA)

RNA polymerase I core binding (IBA)

RNA polymerase I core promoter sequence-specific DNA binding (IEA)

RNA polymerase I general transcription initiation factor activity (IBA,IEA)

translation initiation factor activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

mTOR signaling pathway (ISO)

RNA polymerase I transcription pathway (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

RRN3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	7,537,133 - 7,571,992 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	7,537,131 - 7,571,990 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

RRN3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	15,060,022 - 15,094,335 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	15,060,022 - 15,094,311 (-)	Ensembl			hg38	GRCh38
GRCh37	16	15,153,879 - 15,188,192 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	15,061,380 - 15,095,659 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	15,061,379 - 15,095,613	NCBI
Celera	16	16,150,521 - 16,184,795 (+)	NCBI		Celera
Cytogenetic Map	16	p13.11	NCBI
HuRef	16	14,799,197 - 14,833,480 (-)	NCBI		HuRef
CHM1_1	16	15,095,601 - 15,129,884 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	15,061,074 - 15,095,386 (-)	NCBI		T2T-CHM13v2.0

Rrn3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	13,598,563 - 13,632,705 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	13,598,572 - 13,632,703 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	13,780,699 - 13,814,841 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	13,780,708 - 13,814,839 (+)	Ensembl			mm10	GRCm38
MGSCv37	16	13,780,792 - 13,814,934 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	13,694,277 - 13,728,419 (+)	NCBI		MGSCv36	mm8
Celera	16	14,384,965 - 14,419,116 (+)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	9.59	NCBI

Rrn3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	2,637,016 - 2,672,338 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	2,637,016 - 2,672,330 (-)	Ensembl				GRCr8
mRatBN7.2	10	2,129,949 - 2,165,381 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	2,129,978 - 2,165,663 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	6,826,708 - 6,861,997 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	33,703,845 - 33,739,134 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	2,033,162 - 2,067,849 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	10	5,678,744 - 5,714,033 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	10	6,344,427 - 6,379,716 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	10	8,038,725 - 8,074,014 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	10	8,048,339 - 8,083,628 (-)	NCBI		F344_StmMcwi
Rnor_6.0	10	3,170,387 - 3,214,648 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	3,170,742 - 3,214,655 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	2,057,042 - 2,092,164 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	1,492,181 - 1,527,197 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	1,160,178 - 1,195,455 (-)	NCBI		Celera
RGSC_v3.1	10	1,492,186 - 1,543,048 (+)	NCBI
Cytogenetic Map	10	q11	NCBI

Rrn3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	129,106 - 166,258 (+)	Ensembl
ChiLan1.0	NW_004955442	129,106 - 166,258 (+)	NCBI	ChiLan1.0	ChiLan1.0

RRN3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	15,272,893 - 15,309,408 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	19,055,740 - 19,092,270 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	13,664,478 - 13,700,942 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

RRN3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	28,478,770 - 28,507,722 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	28,478,829 - 28,507,696 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	29,841,964 - 29,870,919 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	28,641,773 - 28,670,927 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	28,641,780 - 28,670,894 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	28,444,804 - 28,473,963 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	28,334,911 - 28,364,048 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	28,740,669 - 28,769,347 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rrn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	114,795,421 - 114,828,934 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936501	2,893,298 - 2,926,804 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936501	2,893,304 - 2,926,795 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RRN3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	14,235,368 - 14,271,790 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	14,235,414 - 14,272,020 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666068	15,775,231 - 15,812,052 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rrn3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624824	8,582,803 - 8,614,313 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624824	8,582,754 - 8,615,073 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rrn3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	9,153,826 - 9,191,425 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in RRN3
404 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021086179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021086180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK236069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK346721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK392552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK396086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01117259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000044185 ⟹ ENSSSCP00000046542

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	3	7,537,133 - 7,571,940 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000045768 ⟹ ENSSSCP00000057361

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	3	7,537,134 - 7,571,972 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000068672 ⟹ ENSSSCP00000065866

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	3	7,553,800 - 7,571,992 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000096135 ⟹ ENSSSCP00000076975

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	3	7,537,271 - 7,571,972 (-)	Ensembl

RefSeq Acc Id:

XM_021086179 ⟹ XP_020941838

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	3	7,537,131 - 7,571,990 (-)	NCBI

Sequence:

show sequence

CGGAGGCGGTCTTAGAAGAAACAAGACTTCCGGCGCAGGTTGCAATCGTCGCGCTTGTCCGGCC
CGATGGCGGCCCCGCTGCTTCACACGCGGTTTCCCGGAGATGCTGCCACCTCGGCCTCCGCAGT
CAAGACCTTGGGCGCGTCTAGAACAGGGCTTTCAGATATGCTTGCACTAGAGAATGATTTCTTC
ATTTCTCCCCCAAGAAAAACCGTTCGGTTTGGTGGAACTGTGACAGAAGTGTTGCTGAAATACA
AAAAGGGCGAAACAAATGACTTTGAATTGTTGAAGAACCAGCTGTTAGATCCAGAGATAAAGGA
TGACCAGATCATTAACTGGCTGCTAGAGTTCCGTTCCTCCATCATGTACTTGACAAAAGACTTT
GAGCAGCTTATTAATATTCTGTTGAGATTGAAGTGGCTGAACAGAAGTCAGACAGTGGTAGAAG
AGTATTTAGCTTTCCTTGGGAATCTTGTATCTGCACAGACTGTCTTCCTGAGACCATGTCTCAG
CATGATCGCCTCTCATTTTGTACCTCCCCGAGTGATCGTTAAGGATGGCGACGTAGATGTTTCG
GATTCTGACGATGAAGACGATAATCTTCCTGCAAATTTTGACACATGTCACAGAGCCTTACAAA
TAATAGCAAGATATGTCCCATCGACGCCATGGTTTCTTATGCCAATACTGGTAGAAAAATTTCC
ATTCGTTCGAAAATCAGAGAGAACATTGGAATGTTATGTTCATAACTTATTAAGGATTAGTGTG
TATTTTCCGACCTTGAGGCATGAAATTCTGGAGCTTGTTATTGAGAAGCTACTCAAGTTGGATG
TGAATGCATCTCGGCAGGATATTGAAGATGCCGAGGAAACAGCACCTCAGTCTGGTAGTGGAAC
AGACGCCGCAGAAGGGCTGTTTCACATGGATGAAGATGAAGAAACTGAACACGAAACAAAGGCT
GATCCCGAAAGGCCCACTCAGATGGTCCATCCCGTAGCTGAACGCCTGGACATCCTGCTGTCTT
TGCTCTTGTCCTATGTCAAGGATGTCTGCTATGTAGATGGTAAGATTGATAACAACAAGACAAA
GGATTTATATCGAGATCTCATAACCATCTTTGACAAACTCCTGTTGCCCACACATGCCTCCTGC
CACGTGCAGTTTTTTATGTTTTACCTCTGTAGCTTTAAATTGGGATTCGCAGAAGCATTTTTGG
AACATCTCTGGAAAAAATTACAGGATCCAAATAATCCTGCTATCATCAGGCAAGCTGCTGCAAA
TTATATTGGAAGCTTTTTGGCAAGAGCTAAATTTATTCCTCTTATTACTGTAAAATCATGCCTA
GATCTTTTGGTTAACTGGCTGCACGTATACCTTAATAACCAGGATTCGGGAGCCAAGGCATTCT
GCGATGTCGCTCTCCACGGGCCGTTCTATTCAGCCTGCCAAGCTGTGTTCTACACTTTTGTTTT
TAGACACAGGCAGCTTTTAAGTGGAAACCTGAAGGAAGGTTTGAGGTACCTTCAAAGTCTAAAT
TTTGAACGGATAGTGATGAGTCAGCTAAATCCTCTGAAGATTTGCCTGCCCTCAGTCGTTAACT
TTTTTGCTGCAATCACAAGCAAATACCAGCTCGTCTTCTGCTACACCCTCATTGAGAGGAACAA
CCGCCAGATGCTGCCTGTTATCAGAAACACTGCTGGGGGGGACTCGGTGCAAACCTGCACAAAC
CCCCTGGACACCTTCTTCCCCTTCGATCCTTGTGTGCTGAAGAGGTCAAAGAAGTTCATCGATC
CTGTTTATCAGGTGTGGGAAGACCTGAGTGCAGAAGAGCTTCAGGAGTTGAAGAAACCCATTAA
AAAGGAGGAGGCGGAAGACGAAGAAGATGACTTTCTGAAAGGTGAAGCTGGGGTGACGCCGAGC
TCCTTTGACGCGCATTTCCGAAGTCCTTCGAGTAGCGTGGGCTCCCCACCTGTCTTGTACCTGC
CTGACCAGTCGCCCCTGATGGCAAAGATGTGTGATTGACACACACTGCTCCCATCATGCTCGGC
GGCACCAGGCTTCGTATTTTTCACCATCGCTTTGAACTAGAGCAAGTGTGTGCCTCAGGCATCT
TCCTTTCAAGTCCGACTAACTCCAGTGTCTGAACAGGTTTTTTTGTTTTTCTTTTCTGTTTTGC
ACCTCGATAGACAAAAGGAAGAGGCAGACCATCATGTGCACCGTTTTACAGTGGAGTTGGTGAT
AAATGTGGAAAGCGTGGCTTGTTTGTTGAAAGTATACATTTTTTGGTTACAGCTTTTTGACATC
ATTATCATGAAATTTCCAAAGTCGGCAACTGCCCATTTTTAACAGATTGCCTTTTTAACAAGGT
TTTTGTCACAACCATAGTCCCAAGGCTTGGTTGATAAGATATCTTTTCATAGAAAAAAATCCTC
TGGGACACTATTTCAAGCCTTCAGAATGAGTATAACTGGTTGGGTTACATTGCCCACCCTCTGC
TGTAACTGTACTTGTGTGTTGGGGTCCAGCGGACACAGAGAAGAGAAGAGGAGAAGGTGGGGAG
GTGGCCAGAGCTGGTCCTGATGCTGCAGGTTGCAGCTGGCACTGAAGGAGAGCTCCAGGGGCTG
AGAAACCAATAAAGGCCTGGAGGGAAGAGAGAGAGAACTTAGGGAACCAGAACCAGAGAAAGCA
GTGGTTTCAGAATGGATTTAAAAGAAGAAAGGAGTTCTGGGTAAATGTGATGCCCACCGACCAA
AAGTGGAGCTGGACTTTTAGGAACACAGCTCCTAGAATTTTACCCCGAGGCTCCCAAGAGTCCT
CTTAGAACTGGAACTACTTGTTTGGGGTGGAGCATTGTATTGGTCATTTGGAGAATCTATCCAA
GTGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAAAAATCTTAGGTCCTTTGGTGGAAGGGTTTTG
CTAGCGACCACAGGGCAACATGACAGCTTCAGGCCCTGTCTACTGGCTGTTGGTACCCTGGATG
CCAGCTCAGTGAAATCCTGTGGTGAGGCTCTGTTTGTATTTTTATAACTAAACATTGAGAGAGG
AGTCTGAACAACCCTGCTTTGCAACAAATTTGTGCAAGCGCTGCTATAGTCATTTTGAAGCTCA
TGCATATTTTAGCTCCATCCCTTATTTGTATACTTTTTTGTTATTTGTGAAAATGGACATTTTT
GAACATATTTATTTTTCTGCCACTTTTTCCTATTCTTTATTTAAAGACAAGCGATACTTTCTTG
ATCATAAATATTTTGTAATGAAATACTTTCTTTTTCCTAGCGCTTTGTAGGCTCTTGTATAGTT
ATATCGATGGCAATGTAGTTTGAATTTCAGTCTGTAAATAAGTTTTTGGCAAACAAATTTTTAT
TGTTTTAAAGAGTTTTGGATATTGGTAATTTTTGGGGGGTGACTTGGTGGAGAGCCTTAAGGTT
CTCTGTTTTTTTTAACTGCTGACAAAAAGTGGGATTTTTGTATAGTGGATAAAATGAATTATTG
AAAACGTGCCCATAGAAATTAATGGTAAGTGGGGTCTTTGTAGATTCAGAAGTAGTTTTAACGT
AGAAGGATGTAAATACAAATAATTCTAATTTCAAAGGCATTTGAGGAAAAAAAATCCATTGTGA
CAATAAAACAATGATATGGTTAATCTAGAACTTTATAAAGGGAGTACCCCAATAAAGAGGCTTC
TCACCCAAA

hide sequence

RefSeq Acc Id:

XM_021086180 ⟹ XP_020941839

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	3	7,537,131 - 7,571,989 (-)	NCBI

Sequence:

show sequence

GGAGGCGGTCTTAGAAGAAACAAGACTTCCGGCGCAGGTTGCAATCGTCGCGCTTGTCCGGCCC
GATGGCGGCCCCGCTGCTTCACACGCGGTTTCCCGGAGATGCTGCCACCTCGGCCTCCGCAGTC
AAGACCTTGGGCGCGTCTAGAACAGGAAAAACCGTTCGGTTTGGTGGAACTGTGACAGAAGTGT
TGCTGAAATACAAAAAGGGCGAAACAAATGACTTTGAATTGTTGAAGAACCAGCTGTTAGATCC
AGAGATAAAGGATGACCAGATCATTAACTGGCTGCTAGAGTTCCGTTCCTCCATCATGTACTTG
ACAAAAGACTTTGAGCAGCTTATTAATATTCTGTTGAGATTGAAGTGGCTGAACAGAAGTCAGA
CAGTGGTAGAAGAGTATTTAGCTTTCCTTGGGAATCTTGTATCTGCACAGACTGTCTTCCTGAG
ACCATGTCTCAGCATGATCGCCTCTCATTTTGTACCTCCCCGAGTGATCGTTAAGGATGGCGAC
GTAGATGTTTCGGATTCTGACGATGAAGACGATAATCTTCCTGCAAATTTTGACACATGTCACA
GAGCCTTACAAATAATAGCAAGATATGTCCCATCGACGCCATGGTTTCTTATGCCAATACTGGT
AGAAAAATTTCCATTCGTTCGAAAATCAGAGAGAACATTGGAATGTTATGTTCATAACTTATTA
AGGATTAGTGTGTATTTTCCGACCTTGAGGCATGAAATTCTGGAGCTTGTTATTGAGAAGCTAC
TCAAGTTGGATGTGAATGCATCTCGGCAGGATATTGAAGATGCCGAGGAAACAGCACCTCAGTC
TGGTAGTGGAACAGACGCCGCAGAAGGGCTGTTTCACATGGATGAAGATGAAGAAACTGAACAC
GAAACAAAGGCTGATCCCGAAAGGCCCACTCAGATGGTCCATCCCGTAGCTGAACGCCTGGACA
TCCTGCTGTCTTTGCTCTTGTCCTATGTCAAGGATGTCTGCTATGTAGATGGTAAGATTGATAA
CAACAAGACAAAGGATTTATATCGAGATCTCATAACCATCTTTGACAAACTCCTGTTGCCCACA
CATGCCTCCTGCCACGTGCAGTTTTTTATGTTTTACCTCTGTAGCTTTAAATTGGGATTCGCAG
AAGCATTTTTGGAACATCTCTGGAAAAAATTACAGGATCCAAATAATCCTGCTATCATCAGGCA
AGCTGCTGCAAATTATATTGGAAGCTTTTTGGCAAGAGCTAAATTTATTCCTCTTATTACTGTA
AAATCATGCCTAGATCTTTTGGTTAACTGGCTGCACGTATACCTTAATAACCAGGATTCGGGAG
CCAAGGCATTCTGCGATGTCGCTCTCCACGGGCCGTTCTATTCAGCCTGCCAAGCTGTGTTCTA
CACTTTTGTTTTTAGACACAGGCAGCTTTTAAGTGGAAACCTGAAGGAAGGTTTGAGGTACCTT
CAAAGTCTAAATTTTGAACGGATAGTGATGAGTCAGCTAAATCCTCTGAAGATTTGCCTGCCCT
CAGTCGTTAACTTTTTTGCTGCAATCACAAGCAAATACCAGCTCGTCTTCTGCTACACCCTCAT
TGAGAGGAACAACCGCCAGATGCTGCCTGTTATCAGAAACACTGCTGGGGGGGACTCGGTGCAA
ACCTGCACAAACCCCCTGGACACCTTCTTCCCCTTCGATCCTTGTGTGCTGAAGAGGTCAAAGA
AGTTCATCGATCCTGTTTATCAGGTGTGGGAAGACCTGAGTGCAGAAGAGCTTCAGGAGTTGAA
GAAACCCATTAAAAAGGAGGAGGCGGAAGACGAAGAAGATGACTTTCTGAAAGGTGAAGCTGGG
GTGACGCCGAGCTCCTTTGACGCGCATTTCCGAAGTCCTTCGAGTAGCGTGGGCTCCCCACCTG
TCTTGTACCTGCCTGACCAGTCGCCCCTGATGGCAAAGATGTGTGATTGACACACACTGCTCCC
ATCATGCTCGGCGGCACCAGGCTTCGTATTTTTCACCATCGCTTTGAACTAGAGCAAGTGTGTG
CCTCAGGCATCTTCCTTTCAAGTCCGACTAACTCCAGTGTCTGAACAGGTTTTTTTGTTTTTCT
TTTCTGTTTTGCACCTCGATAGACAAAAGGAAGAGGCAGACCATCATGTGCACCGTTTTACAGT
GGAGTTGGTGATAAATGTGGAAAGCGTGGCTTGTTTGTTGAAAGTATACATTTTTTGGTTACAG
CTTTTTGACATCATTATCATGAAATTTCCAAAGTCGGCAACTGCCCATTTTTAACAGATTGCCT
TTTTAACAAGGTTTTTGTCACAACCATAGTCCCAAGGCTTGGTTGATAAGATATCTTTTCATAG
AAAAAAATCCTCTGGGACACTATTTCAAGCCTTCAGAATGAGTATAACTGGTTGGGTTACATTG
CCCACCCTCTGCTGTAACTGTACTTGTGTGTTGGGGTCCAGCGGACACAGAGAAGAGAAGAGGA
GAAGGTGGGGAGGTGGCCAGAGCTGGTCCTGATGCTGCAGGTTGCAGCTGGCACTGAAGGAGAG
CTCCAGGGGCTGAGAAACCAATAAAGGCCTGGAGGGAAGAGAGAGAGAACTTAGGGAACCAGAA
CCAGAGAAAGCAGTGGTTTCAGAATGGATTTAAAAGAAGAAAGGAGTTCTGGGTAAATGTGATG
CCCACCGACCAAAAGTGGAGCTGGACTTTTAGGAACACAGCTCCTAGAATTTTACCCCGAGGCT
CCCAAGAGTCCTCTTAGAACTGGAACTACTTGTTTGGGGTGGAGCATTGTATTGGTCATTTGGA
GAATCTATCCAAGTGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAAAAATCTTAGGTCCTTTGGT
GGAAGGGTTTTGCTAGCGACCACAGGGCAACATGACAGCTTCAGGCCCTGTCTACTGGCTGTTG
GTACCCTGGATGCCAGCTCAGTGAAATCCTGTGGTGAGGCTCTGTTTGTATTTTTATAACTAAA
CATTGAGAGAGGAGTCTGAACAACCCTGCTTTGCAACAAATTTGTGCAAGCGCTGCTATAGTCA
TTTTGAAGCTCATGCATATTTTAGCTCCATCCCTTATTTGTATACTTTTTTGTTATTTGTGAAA
ATGGACATTTTTGAACATATTTATTTTTCTGCCACTTTTTCCTATTCTTTATTTAAAGACAAGC
GATACTTTCTTGATCATAAATATTTTGTAATGAAATACTTTCTTTTTCCTAGCGCTTTGTAGGC
TCTTGTATAGTTATATCGATGGCAATGTAGTTTGAATTTCAGTCTGTAAATAAGTTTTTGGCAA
ACAAATTTTTATTGTTTTAAAGAGTTTTGGATATTGGTAATTTTTGGGGGGTGACTTGGTGGAG
AGCCTTAAGGTTCTCTGTTTTTTTTAACTGCTGACAAAAAGTGGGATTTTTGTATAGTGGATAA
AATGAATTATTGAAAACGTGCCCATAGAAATTAATGGTAAGTGGGGTCTTTGTAGATTCAGAAG
TAGTTTTAACGTAGAAGGATGTAAATACAAATAATTCTAATTTCAAAGGCATTTGAGGAAAAAA
AATCCATTGTGACAATAAAACAATGATATGGTTAATCTAGAACTTTATAAAGGGAGTACCCCAA
TAAAGAGGCTTCTCACCCAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020941838	(Get FASTA)	NCBI Sequence Viewer
	XP_020941839	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000046542
	ENSSSCP00000046542.3
	ENSSSCP00000057361
	ENSSSCP00000057361.1
	ENSSSCP00000065866.2
	ENSSSCP00000076975.1
	ENSSSCP00015031779.1
	ENSSSCP00015031840.1
	ENSSSCP00015031901.1
	ENSSSCP00025005302.1
	ENSSSCP00025005310.1
	ENSSSCP00025005319.1
	ENSSSCP00030020359.1
	ENSSSCP00030020382.1
	ENSSSCP00035036183.1
	ENSSSCP00035036187.1
	ENSSSCP00035036197.1
	ENSSSCP00035036206.1
	ENSSSCP00035036211.1
	ENSSSCP00040035220.1
	ENSSSCP00040035295.1
	ENSSSCP00040035365.1
	ENSSSCP00045020248.1
	ENSSSCP00045020303.1
	ENSSSCP00045020364.1
	ENSSSCP00050005289.1
	ENSSSCP00050005293.1
	ENSSSCP00055007480.1
	ENSSSCP00055007497.1
	ENSSSCP00055007509.1
	ENSSSCP00060033037.1
	ENSSSCP00060033040.1
	ENSSSCP00060033043.1
	ENSSSCP00065032159.1
	ENSSSCP00065032163.1
	ENSSSCP00065032167.1
	ENSSSCP00070021752.1
	ENSSSCP00070021758.1
	ENSSSCP00070021778.1

RefSeq Acc Id:	XP_020941838 ⟸ XM_021086179
- Peptide Label:	isoform X1
- UniProtKB:	A0A287BL74 (UniProtKB/TrEMBL), A0A4X1U1R6 (UniProtKB/TrEMBL), A0A8D1FDJ9 (UniProtKB/TrEMBL), A0A8D0UI15 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAPLLHTRFPGDAATSASAVKTLGASRTGLSDMLALENDFFISPPRKTVRFGGTVTEVLLKYK KGETNDFELLKNQLLDPEIKDDQIINWLLEFRSSIMYLTKDFEQLINILLRLKWLNRSQTVVEE YLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIVKDGDVDVSDSDDEDDNLPANFDTCHRALQI IARYVPSTPWFLMPILVEKFPFVRKSERTLECYVHNLLRISVYFPTLRHEILELVIEKLLKLDV NASRQDIEDAEETAPQSGSGTDAAEGLFHMDEDEETEHETKADPERPTQMVHPVAERLDILLSL LLSYVKDVCYVDGKIDNNKTKDLYRDLITIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEAFLE HLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPLITVKSCLDLLVNWLHVYLNNQDSGAKAFC DVALHGPFYSACQAVFYTFVFRHRQLLSGNLKEGLRYLQSLNFERIVMSQLNPLKICLPSVVNF FAAITSKYQLVFCYTLIERNNRQMLPVIRNTAGGDSVQTCTNPLDTFFPFDPCVLKRSKKFIDP VYQVWEDLSAEELQELKKPIKKEEAEDEEDDFLKGEAGVTPSSFDAHFRSPSSSVGSPPVLYLP DQSPLMAKMCD hide sequence

RefSeq Acc Id:	XP_020941839 ⟸ XM_021086180
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D1FDJ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAPLLHTRFPGDAATSASAVKTLGASRTGKTVRFGGTVTEVLLKYKKGETNDFELLKNQLLDP EIKDDQIINWLLEFRSSIMYLTKDFEQLINILLRLKWLNRSQTVVEEYLAFLGNLVSAQTVFLR PCLSMIASHFVPPRVIVKDGDVDVSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILV EKFPFVRKSERTLECYVHNLLRISVYFPTLRHEILELVIEKLLKLDVNASRQDIEDAEETAPQS GSGTDAAEGLFHMDEDEETEHETKADPERPTQMVHPVAERLDILLSLLLSYVKDVCYVDGKIDN NKTKDLYRDLITIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPNNPAIIRQ AAANYIGSFLARAKFIPLITVKSCLDLLVNWLHVYLNNQDSGAKAFCDVALHGPFYSACQAVFY TFVFRHRQLLSGNLKEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITSKYQLVFCYTLI ERNNRQMLPVIRNTAGGDSVQTCTNPLDTFFPFDPCVLKRSKKFIDPVYQVWEDLSAEELQELK KPIKKEEAEDEEDDFLKGEAGVTPSSFDAHFRSPSSSVGSPPVLYLPDQSPLMAKMCD hide sequence

Ensembl Acc Id:

ENSSSCP00000046542 ⟸ ENSSSCT00000044185

Ensembl Acc Id:

ENSSSCP00000065866 ⟸ ENSSSCT00000068672

Ensembl Acc Id:

ENSSSCP00000057361 ⟸ ENSSSCT00000045768

Ensembl Acc Id:

ENSSSCP00000076975 ⟸ ENSSSCT00000096135

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000033356	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015058928	UniProtKB/TrEMBL
	ENSSSCG00025010287	UniProtKB/TrEMBL
	ENSSSCG00030032757	UniProtKB/TrEMBL
	ENSSSCG00035064485	UniProtKB/TrEMBL
	ENSSSCG00040059679	UniProtKB/TrEMBL
	ENSSSCG00045017152	UniProtKB/TrEMBL
	ENSSSCG00050009452	UniProtKB/TrEMBL
	ENSSSCG00055004777	UniProtKB/TrEMBL
	ENSSSCG00060056135	UniProtKB/TrEMBL
	ENSSSCG00065053917	UniProtKB/TrEMBL
	ENSSSCG00070013162	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000044185	ENTREZGENE
	ENSSSCT00000044185.3	UniProtKB/TrEMBL
	ENSSSCT00000045768	ENTREZGENE
	ENSSSCT00000045768.3	UniProtKB/TrEMBL
	ENSSSCT00000068672.2	UniProtKB/TrEMBL
	ENSSSCT00000096135.1	UniProtKB/TrEMBL
	ENSSSCT00015078734.1	UniProtKB/TrEMBL
	ENSSSCT00015078903.1	UniProtKB/TrEMBL
	ENSSSCT00015079060.1	UniProtKB/TrEMBL
	ENSSSCT00025013565.1	UniProtKB/TrEMBL
	ENSSSCT00025013581.1	UniProtKB/TrEMBL
	ENSSSCT00025013606.1	UniProtKB/TrEMBL
	ENSSSCT00030045279.1	UniProtKB/TrEMBL
	ENSSSCT00030045327.1	UniProtKB/TrEMBL
	ENSSSCT00035086797.1	UniProtKB/TrEMBL
	ENSSSCT00035086806.1	UniProtKB/TrEMBL
	ENSSSCT00035086826.1	UniProtKB/TrEMBL
	ENSSSCT00035086850.1	UniProtKB/TrEMBL
	ENSSSCT00035086857.1	UniProtKB/TrEMBL
	ENSSSCT00040081131.1	UniProtKB/TrEMBL
	ENSSSCT00040081254.1	UniProtKB/TrEMBL
	ENSSSCT00040081378.1	UniProtKB/TrEMBL
	ENSSSCT00045029223.1	UniProtKB/TrEMBL
	ENSSSCT00045029304.1	UniProtKB/TrEMBL
	ENSSSCT00045029389.1	UniProtKB/TrEMBL
	ENSSSCT00050012743.1	UniProtKB/TrEMBL
	ENSSSCT00050012758.1	UniProtKB/TrEMBL
	ENSSSCT00055009416.1	UniProtKB/TrEMBL
	ENSSSCT00055009434.1	UniProtKB/TrEMBL
	ENSSSCT00055009448.1	UniProtKB/TrEMBL
	ENSSSCT00060076462.1	UniProtKB/TrEMBL
	ENSSSCT00060076470.1	UniProtKB/TrEMBL
	ENSSSCT00060076475.1	UniProtKB/TrEMBL
	ENSSSCT00065073848.1	UniProtKB/TrEMBL
	ENSSSCT00065073853.1	UniProtKB/TrEMBL
	ENSSSCT00065073859.1	UniProtKB/TrEMBL
	ENSSSCT00070026204.1	UniProtKB/TrEMBL
	ENSSSCT00070026211.1	UniProtKB/TrEMBL
	ENSSSCT00070026233.1	UniProtKB/TrEMBL
InterPro	ARM-type_fold	UniProtKB/TrEMBL
	RNA_pol_I_trans_ini_fac_RRN3	UniProtKB/TrEMBL
NCBI Gene	RRN3	ENTREZGENE
PANTHER	PTHR12790	UniProtKB/TrEMBL
	RNA POLYMERASE I-SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3-RELATED	UniProtKB/TrEMBL
Pfam	RRN3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48371	UniProtKB/TrEMBL
UniProt	A0A287AR50_PIG	UniProtKB/TrEMBL
	A0A287BL74	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1U1R6	ENTREZGENE
	A0A4X1U223_PIG	UniProtKB/TrEMBL
	A0A5G2QP69_PIG	UniProtKB/TrEMBL
	A0A8D0M5W0_PIG	UniProtKB/TrEMBL
	A0A8D0M6P3_PIG	UniProtKB/TrEMBL
	A0A8D0M7A1_PIG	UniProtKB/TrEMBL
	A0A8D0UI15	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1ATH7_PIG	UniProtKB/TrEMBL
	A0A8D1FBR7_PIG	UniProtKB/TrEMBL
	A0A8D1FDJ9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1FH75_PIG	UniProtKB/TrEMBL
	A0A8D1HUF4_PIG	UniProtKB/TrEMBL
	A0A8D1W3C8_PIG	UniProtKB/TrEMBL
	A0A8D2BP39_PIG	UniProtKB/TrEMBL
UniProt Secondary	A0A4X1U1R6	UniProtKB/TrEMBL
	A0A8W4FCD0	UniProtKB/TrEMBL
VGNC ID	VGNC:110713	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - PID (archival)

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Imported Disease Annotations - MGI

RGD Manual Annotations

Imported Annotations - PID (archival)