Rrn3 (RRN3 homolog, RNA polymerase I transcription factor) - Rat Genome Database

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Gene: Rrn3 (RRN3 homolog, RNA polymerase I transcription factor) Ictidomys tridecemlineatus
Analyze
Symbol: Rrn3
Name: RRN3 homolog, RNA polymerase I transcription factor
RGD ID: 12516283
Description: ENCODES a protein that exhibits RNA polymerase binding (inferred); RNA polymerase I core binding (inferred); RNA polymerase I core promoter sequence-specific DNA binding (inferred); INVOLVED IN cytoplasm organization (ortholog); DNA-templated transcription initiation (ortholog); fibroblast proliferation (ortholog); PARTICIPATES IN mTOR signaling pathway; RNA polymerase I transcription pathway; ASSOCIATED WITH autistic disorder (ortholog); epilepsy (ortholog); Parkinson's disease (ortholog); FOUND IN nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RNA polymerase I-specific transcription initiation factor RRN3; RRN3 RNA polymerase I transcription factor homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344114,795,421 - 114,828,934 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365012,893,298 - 2,926,804 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365012,893,304 - 2,926,795 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rrn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344114,795,421 - 114,828,934 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365012,893,298 - 2,926,804 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365012,893,304 - 2,926,795 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RRN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381615,060,022 - 15,094,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1615,060,033 - 15,094,311 (-)EnsemblGRCh38hg38GRCh38
GRCh371615,153,879 - 15,188,192 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361615,061,380 - 15,095,659 (-)NCBINCBI36Build 36hg18NCBI36
Build 341615,061,379 - 15,095,613NCBI
Celera1616,150,521 - 16,184,795 (+)NCBICelera
Cytogenetic Map16p13.11NCBI
HuRef1614,799,197 - 14,833,480 (-)NCBIHuRef
CHM1_11615,095,601 - 15,129,884 (+)NCBICHM1_1
T2T-CHM13v2.01615,061,074 - 15,095,386 (-)NCBIT2T-CHM13v2.0
Rrn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391613,598,563 - 13,632,705 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1613,598,572 - 13,632,703 (+)EnsemblGRCm39 Ensembl
GRCm381613,780,699 - 13,814,841 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1613,780,708 - 13,814,839 (+)EnsemblGRCm38mm10GRCm38
MGSCv371613,780,792 - 13,814,934 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361613,694,277 - 13,728,419 (+)NCBIMGSCv36mm8
Celera1614,384,965 - 14,419,116 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map169.59NCBI
Rrn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8102,637,016 - 2,672,338 (-)NCBIGRCr8
mRatBN7.2102,129,949 - 2,165,381 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl102,129,978 - 2,165,663 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx106,826,708 - 6,861,997 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01033,703,845 - 33,739,134 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0102,033,162 - 2,067,849 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0103,170,387 - 3,214,648 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl103,170,742 - 3,214,655 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0102,057,042 - 2,092,164 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4101,492,181 - 1,527,197 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1101,492,186 - 1,543,048 (+)NCBI
Celera101,160,178 - 1,195,455 (-)NCBICelera
Cytogenetic Map10q11NCBI
Rrn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955442129,106 - 166,258 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955442129,106 - 166,258 (+)NCBIChiLan1.0ChiLan1.0
RRN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21815,272,893 - 15,309,408 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11619,055,740 - 19,092,270 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01613,664,478 - 13,700,942 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RRN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1628,478,770 - 28,507,722 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl628,478,829 - 28,507,696 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha629,841,964 - 29,870,919 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0628,641,773 - 28,670,927 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl628,641,780 - 28,670,894 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1628,444,804 - 28,473,963 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0628,334,911 - 28,364,048 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0628,740,669 - 28,769,347 (-)NCBIUU_Cfam_GSD_1.0
RRN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl37,537,133 - 7,571,992 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.137,537,131 - 7,571,990 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RRN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1514,235,368 - 14,271,790 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl514,235,414 - 14,272,020 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606815,775,231 - 15,812,052 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rrn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248248,582,803 - 8,614,313 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248248,582,754 - 8,615,073 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005323689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000009283   ⟹   ENSSTOP00000008329
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365012,893,298 - 2,926,804 (+)Ensembl
RefSeq Acc Id: XM_005323689   ⟹   XP_005323746
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344114,795,421 - 114,828,934 (+)NCBI
SpeTri2.0NW_0049365012,893,304 - 2,926,795 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005323746 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000008329.3
GenBank Protein KAG3259368 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005323746   ⟸   XM_005323689
- UniProtKB: I3MD96 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000008329   ⟸   ENSSTOT00000009283


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009277 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009283.3 UniProtKB/TrEMBL
InterPro RNA_pol_I_trans_ini_fac_RRN3 UniProtKB/TrEMBL
NCBI Gene Rrn3 ENTREZGENE
PANTHER PTHR12790 UniProtKB/TrEMBL
  RNA POLYMERASE I-SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3-RELATED UniProtKB/TrEMBL
Pfam RRN3 UniProtKB/TrEMBL
UniProt I3MD96 ENTREZGENE, UniProtKB/TrEMBL