SYT16 (synaptotagmin 16) - Rat Genome Database

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Gene: SYT16 (synaptotagmin 16) Sus scrofa
Analyze
Symbol: SYT16
Name: synaptotagmin 16
RGD ID: 13924627
Description: ENCODES a protein that exhibits identical protein binding (inferred); phospholipid binding (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: synaptotagmin-16
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1190,735,881 - 191,031,684 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11190,735,897 - 191,059,715 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21212,388,776 - 212,464,354 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
SYT16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1190,735,881 - 191,031,684 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11190,735,897 - 191,059,715 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21212,388,776 - 212,464,354 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYT16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381461,812,162 - 62,112,825 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1461,811,849 - 62,112,550 (+)Ensemblhg38GRCh38
GRCh371462,278,880 - 62,579,268 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361461,532,294 - 61,638,180 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341461,532,490 - 61,637,178NCBI
Celera1442,513,014 - 42,618,887 (+)NCBICelera
Cytogenetic Map14q23.2NCBI
HuRef1442,626,244 - 42,732,142 (+)NCBIHuRef
CHM1_11462,401,963 - 62,507,860 (+)NCBICHM1_1
T2T-CHM13v2.01456,019,035 - 56,320,045 (+)NCBIT2T-CHM13v2.0
Syt16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391274,044,490 - 74,314,690 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1274,044,435 - 74,320,041 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381273,997,624 - 74,267,916 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1273,997,661 - 74,273,267 (+)Ensemblmm10GRCm38
MGSCv371275,098,748 - 75,368,903 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361274,916,599 - 75,186,752 (+)NCBIMGSCv36mm8
Celera1275,111,274 - 75,381,064 (+)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1232.02NCBI
Syt16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8698,456,582 - 98,735,306 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl698,457,274 - 98,707,936 (+)EnsemblGRCr8
mRatBN7.2692,721,415 - 92,972,140 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl692,721,101 - 92,971,748 (+)EnsemblmRatBN7.2
Dahl_SR_JrHsd699,999,024 - 100,249,879 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive699,405,977 - 99,656,827 (+)NCBILyon_Normotensive
Lyon_Hypertensive697,199,680 - 97,450,561 (+)NCBILyon_Hypertensive
F344_StmMcwi696,324,678 - 96,576,096 (+)NCBIF344_StmMcwi
Rnor_6.0697,076,304 - 97,199,856 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl697,110,158 - 97,198,899 (+)Ensemblrn6Rnor6.0
Rnor_5.06106,340,012 - 106,466,441 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.06106,536,889 - 106,630,139 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4696,684,622 - 96,774,478 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera691,177,534 - 91,427,252 (+)NCBICelera
Cytogenetic Map6q24NCBI
Syt16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554667,601,796 - 7,797,793 (-)Ensembl
ChiLan1.0NW_0049554667,600,990 - 7,927,710 (-)NCBIChiLan1.0ChiLan1.0
SYT16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21562,942,429 - 63,243,109 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11462,158,948 - 62,459,623 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01442,412,445 - 42,713,118 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11460,827,456 - 60,958,659 (+)NCBIPanPan1.1PanPan1.1panPan2
SYT16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1836,820,031 - 36,945,267 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl836,839,334 - 36,934,378 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha836,460,224 - 36,697,689 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0836,940,898 - 37,174,933 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl836,940,215 - 37,173,360 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1836,550,398 - 36,784,298 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0836,627,803 - 36,869,264 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0836,990,302 - 37,225,514 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Syt16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864068,067,673 - 68,201,771 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364955,998,614 - 6,123,440 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364955,998,728 - 6,123,975 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYT16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12439,180,924 - 39,282,687 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2439,181,068 - 39,280,083 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605327,242,975 - 27,557,915 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Syt16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473439,030,391 - 39,213,851 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473439,030,188 - 39,155,210 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Syt16
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1788,487,767 - 88,518,570 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in SYT16
5313 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
7 23 3 1 8 2 23 3 6 1

Sequence


Ensembl Acc Id: ENSSSCT00000005620   ⟹   ENSSSCP00000005479
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1190,874,964 - 191,026,649 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000103801   ⟹   ENSSSCP00000074869
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1190,735,881 - 191,031,684 (+)Ensembl
RefSeq Acc Id: XM_021062535   ⟹   XP_020918194
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11190,874,867 - 191,059,715 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021062537   ⟹   XP_020918196
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11190,901,668 - 191,059,715 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021062543   ⟹   XP_020918202
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11190,874,873 - 191,059,715 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021062549   ⟹   XP_020918208
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11190,735,897 - 191,059,715 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021062553   ⟹   XP_020918212
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11190,735,901 - 191,059,715 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020918208   ⟸   XM_021062549
- Peptide Label: isoform X2
- UniProtKB: A0A480DIX3 (UniProtKB/TrEMBL),   A0A8W4F7W1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020918212   ⟸   XM_021062553
- Peptide Label: isoform X3
- UniProtKB: A0A8W4F7W1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020918194   ⟸   XM_021062535
- Peptide Label: isoform X1
- UniProtKB: A0A4X1WCX1 (UniProtKB/TrEMBL),   F1SRU3 (UniProtKB/TrEMBL),   A0A8D1DWZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020918202   ⟸   XM_021062543
- Peptide Label: isoform X1
- UniProtKB: A0A4X1WCX1 (UniProtKB/TrEMBL),   F1SRU3 (UniProtKB/TrEMBL),   A0A8D1DWZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020918196   ⟸   XM_021062537
- Peptide Label: isoform X1
- UniProtKB: A0A4X1WCX1 (UniProtKB/TrEMBL),   F1SRU3 (UniProtKB/TrEMBL),   A0A8D1DWZ6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000005479   ⟸   ENSSSCT00000005620
Ensembl Acc Id: ENSSSCP00000074869   ⟸   ENSSSCT00000103801
Protein Domains
C2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005098 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015003939 UniProtKB/TrEMBL
  ENSSSCG00025002962 UniProtKB/TrEMBL
  ENSSSCG00030001339 UniProtKB/TrEMBL
  ENSSSCG00035007362 UniProtKB/TrEMBL
  ENSSSCG00040022981 UniProtKB/TrEMBL
  ENSSSCG00045015991 UniProtKB/TrEMBL
  ENSSSCG00055000101 UniProtKB/TrEMBL
  ENSSSCG00060060319 UniProtKB/TrEMBL
  ENSSSCG00065055408 UniProtKB/TrEMBL
  ENSSSCG00070030490 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005620 ENTREZGENE
  ENSSSCT00000005620.5 UniProtKB/TrEMBL
  ENSSSCT00000103801 ENTREZGENE
  ENSSSCT00000103801.1 UniProtKB/TrEMBL
  ENSSSCT00015005194.1 UniProtKB/TrEMBL
  ENSSSCT00025003890.1 UniProtKB/TrEMBL
  ENSSSCT00030001759.1 UniProtKB/TrEMBL
  ENSSSCT00030001772.1 UniProtKB/TrEMBL
  ENSSSCT00035009163.1 UniProtKB/TrEMBL
  ENSSSCT00040030795.1 UniProtKB/TrEMBL
  ENSSSCT00040030994.1 UniProtKB/TrEMBL
  ENSSSCT00045027209.1 UniProtKB/TrEMBL
  ENSSSCT00055000179.1 UniProtKB/TrEMBL
  ENSSSCT00060082285.1 UniProtKB/TrEMBL
  ENSSSCT00060082302.1 UniProtKB/TrEMBL
  ENSSSCT00065075841.1 UniProtKB/TrEMBL
  ENSSSCT00065075850.1 UniProtKB/TrEMBL
  ENSSSCT00070061379.1 UniProtKB/TrEMBL
  ENSSSCT00070061380.1 UniProtKB/TrEMBL
  ENSSSCT00070061382.1 UniProtKB/TrEMBL
  ENSSSCT00070061383.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  SYT14/14L/16 UniProtKB/TrEMBL
NCBI Gene SYT16 ENTREZGENE
PANTHER PTHR46129 UniProtKB/TrEMBL
  PTHR46129:SF4 UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/TrEMBL
SMART SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt A0A480DIX3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W7A6_PIG UniProtKB/TrEMBL
  A0A4X1WCP3_PIG UniProtKB/TrEMBL
  A0A4X1WCX1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1DUK6_PIG UniProtKB/TrEMBL
  A0A8D1DWZ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4F7W1 ENTREZGENE, UniProtKB/TrEMBL
  F1SRU3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93683 ENTREZGENE