SYT16 (synaptotagmin 16) - Rat Genome Database

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Gene: SYT16 (synaptotagmin 16) Homo sapiens
Analyze
Symbol: SYT16
Name: synaptotagmin 16
RGD ID: 1346455
HGNC Page HGNC:23142
Description: Predicted to enable phospholipid binding activity. Predicted to be located in membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: chr14 synaptotagmin; CHR14SYT; CTD-2277K2.1; Strep14; synaptotagmin 14-like protein; synaptotagmin XIV-related protein; synaptotagmin XVI; synaptotagmin-16; SYT14L; syt14r; yt14r
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381461,812,162 - 62,112,825 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1461,811,974 - 62,112,550 (+)EnsemblGRCh38hg38GRCh38
GRCh371462,278,880 - 62,579,268 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361461,532,294 - 61,638,180 (+)NCBINCBI36Build 36hg18NCBI36
Build 341461,532,490 - 61,637,178NCBI
Celera1442,513,014 - 42,618,887 (+)NCBICelera
Cytogenetic Map14q23.2NCBI
HuRef1442,626,244 - 42,732,142 (+)NCBIHuRef
CHM1_11462,401,963 - 62,507,860 (+)NCBICHM1_1
T2T-CHM13v2.01456,019,035 - 56,320,045 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:11543631   PMID:12801916   PMID:14702039   PMID:15238157   PMID:15489334   PMID:16946482   PMID:20379614   PMID:20707712   PMID:21873635   PMID:22810586   PMID:24478790   PMID:24688116  
PMID:25416956   PMID:28005267   PMID:28514442   PMID:29892012   PMID:31515488   PMID:32289666   PMID:32296183   PMID:32814053   PMID:33961781  


Genomics

Comparative Map Data
SYT16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381461,812,162 - 62,112,825 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1461,811,974 - 62,112,550 (+)EnsemblGRCh38hg38GRCh38
GRCh371462,278,880 - 62,579,268 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361461,532,294 - 61,638,180 (+)NCBINCBI36Build 36hg18NCBI36
Build 341461,532,490 - 61,637,178NCBI
Celera1442,513,014 - 42,618,887 (+)NCBICelera
Cytogenetic Map14q23.2NCBI
HuRef1442,626,244 - 42,732,142 (+)NCBIHuRef
CHM1_11462,401,963 - 62,507,860 (+)NCBICHM1_1
T2T-CHM13v2.01456,019,035 - 56,320,045 (+)NCBIT2T-CHM13v2.0
Syt16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391274,044,490 - 74,314,690 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1274,044,435 - 74,320,041 (+)EnsemblGRCm39 Ensembl
GRCm381273,997,624 - 74,267,916 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1273,997,661 - 74,273,267 (+)EnsemblGRCm38mm10GRCm38
MGSCv371275,098,748 - 75,368,903 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361274,916,599 - 75,186,752 (+)NCBIMGSCv36mm8
Celera1275,111,274 - 75,381,064 (+)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1232.02NCBI
Syt16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8698,456,582 - 98,735,306 (+)NCBIGRCr8
mRatBN7.2692,721,415 - 92,972,140 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl692,721,101 - 92,971,748 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0697,076,304 - 97,199,856 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl697,110,158 - 97,198,899 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06106,536,889 - 106,630,139 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.06106,340,012 - 106,466,441 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4696,684,622 - 96,774,478 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera691,177,534 - 91,427,252 (+)NCBICelera
Cytogenetic Map6q24NCBI
Syt16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554667,601,796 - 7,797,793 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554667,600,990 - 7,927,710 (-)NCBIChiLan1.0ChiLan1.0
SYT16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21562,942,429 - 63,243,109 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11462,158,948 - 62,459,623 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01442,412,445 - 42,713,118 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11460,827,456 - 60,958,659 (+)NCBIpanpan1.1PanPan1.1panPan2
SYT16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1836,820,031 - 36,945,267 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl836,839,334 - 36,934,378 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha836,460,224 - 36,697,689 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0836,940,898 - 37,174,933 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl836,940,215 - 37,173,360 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1836,550,398 - 36,784,298 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0836,627,803 - 36,869,264 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0836,990,302 - 37,225,514 (+)NCBIUU_Cfam_GSD_1.0
Syt16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864068,067,673 - 68,201,771 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364955,998,614 - 6,123,440 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364955,998,728 - 6,123,975 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYT16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1190,735,881 - 191,031,684 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11190,735,897 - 191,059,715 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21212,388,776 - 212,464,354 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYT16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12439,180,924 - 39,282,687 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2439,181,068 - 39,280,083 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605327,242,975 - 27,557,915 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Syt16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473439,030,391 - 39,213,851 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473439,030,188 - 39,155,210 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SYT16
40 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 14q23.1-23.3(chr14:59917051-66750803)x1 copy number loss See cases [RCV000050892] Chr14:59917051..66750803 [GRCh38]
Chr14:60383769..67217521 [GRCh37]
Chr14:59453522..66287274 [NCBI36]
Chr14:14q23.1-23.3		 pathogenic
GRCh38/hg38 14q22.3-23.3(chr14:57041036-67208231)x1 copy number loss See cases [RCV000051521] Chr14:57041036..67208231 [GRCh38]
Chr14:57507754..67674948 [GRCh37]
Chr14:56577507..66744701 [NCBI36]
Chr14:14q22.3-23.3		 pathogenic
GRCh38/hg38 14q11.2-32.33(chr14:20151149-106855263)x3 copy number gain See cases [RCV000135543] Chr14:20151149..106855263 [GRCh38]
Chr14:20619308..107263478 [GRCh37]
Chr14:19689148..106334523 [NCBI36]
Chr14:14q11.2-32.33		 pathogenic
GRCh38/hg38 14q23.1-23.2(chr14:57653413-64093528)x1 copy number loss See cases [RCV000138348] Chr14:57653413..64093528 [GRCh38]
Chr14:58120131..64560246 [GRCh37]
Chr14:57189884..63629999 [NCBI36]
Chr14:14q23.1-23.2		 pathogenic
GRCh38/hg38 14q11.2-32.33(chr14:20043514-106877229)x3 copy number gain See cases [RCV000143373] Chr14:20043514..106877229 [GRCh38]
Chr14:20511673..107285437 [GRCh37]
Chr14:19581513..106356482 [NCBI36]
Chr14:14q11.2-32.33		 pathogenic
NC_000014.9:g.61835994C>A single nucleotide variant Lung cancer [RCV000098976] Chr14:61835994 [GRCh38]
Chr14:62302712 [GRCh37]
Chr14:14q23.2		 uncertain significance
NC_000014.9:g.61872752G>A single nucleotide variant Lung cancer [RCV000098977] Chr14:61872752 [GRCh38]
Chr14:62339470 [GRCh37]
Chr14:14q23.2		 uncertain significance
GRCh37/hg19 14q11.2-32.33(chr14:19794561-107234280)x3 copy number gain See cases [RCV000446256] Chr14:19794561..107234280 [GRCh37]
Chr14:14q11.2-32.33		 pathogenic
GRCh37/hg19 14q23.2-32.33(chr14:62493932-107285437)x3 copy number gain See cases [RCV000448557] Chr14:62493932..107285437 [GRCh37]
Chr14:14q23.2-32.33		 pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:20511673-107285437) copy number gain See cases [RCV000512041] Chr14:20511673..107285437 [GRCh37]
Chr14:14q11.2-32.33		 pathogenic
NM_001367656.1(SYT16):c.418A>C (p.Ile140Leu) single nucleotide variant Inborn genetic diseases [RCV003261503] Chr14:61996437 [GRCh38]
Chr14:62463155 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.344A>G (p.Asp115Gly) single nucleotide variant Inborn genetic diseases [RCV003273921] Chr14:61996363 [GRCh38]
Chr14:62463081 [GRCh37]
Chr14:14q23.2		 uncertain significance
GRCh37/hg19 14q11.1-32.33(chr14:19000422-107289053)x3 copy number gain not provided [RCV000738412] Chr14:19000422..107289053 [GRCh37]
Chr14:14q11.1-32.33		 pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:19280733-107287663)x3 copy number gain not provided [RCV000738413] Chr14:19280733..107287663 [GRCh37]
Chr14:14q11.2-32.33		 pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:19327823-107287663)x3 copy number gain not provided [RCV000738414] Chr14:19327823..107287663 [GRCh37]
Chr14:14q11.2-32.33		 pathogenic
GRCh37/hg19 14q23.2(chr14:62487438-62509647)x1 copy number loss not provided [RCV000738512] Chr14:62487438..62509647 [GRCh37]
Chr14:14q23.2		 benign
Single allele duplication not provided [RCV000844902] Chr14:61701451..62960957 [GRCh37]
Chr14:14q23.1-23.2		 not provided
GRCh37/hg19 14q23.1-23.2(chr14:61126208-63517651)x3 copy number gain not provided [RCV000845699] Chr14:61126208..63517651 [GRCh37]
Chr14:14q23.1-23.2		 uncertain significance
GRCh37/hg19 14q23.1-23.2(chr14:61701451-62960957) copy number gain not provided [RCV001249389] Chr14:61701451..62960957 [GRCh37]
Chr14:14q23.1-23.2		 not provided
GRCh37/hg19 14q23.1-23.3(chr14:61409856-65742610)x3 copy number gain not provided [RCV001259780] Chr14:61409856..65742610 [GRCh37]
Chr14:14q23.1-23.3		 likely pathogenic
GRCh37/hg19 14q22.2-24.3(chr14:54654001-75828024)x3 copy number gain 14q22.2q24.3 duplication [RCV001506967] Chr14:54654001..75828024 [GRCh37]
Chr14:14q22.2-24.3		 likely pathogenic
GRCh37/hg19 14q13.3-32.33(chr14:37671058-106985955)x2 copy number gain See cases [RCV002286356] Chr14:37671058..106985955 [GRCh37]
Chr14:14q13.3-32.33		 pathogenic
GRCh37/hg19 14q22.3-23.2(chr14:57804997-63590203)x1 copy number loss not provided [RCV002472446] Chr14:57804997..63590203 [GRCh37]
Chr14:14q22.3-23.2		 likely pathogenic
NM_001367656.1(SYT16):c.1087G>A (p.Ala363Thr) single nucleotide variant Inborn genetic diseases [RCV002752410] Chr14:62080927 [GRCh38]
Chr14:62547645 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.1709A>G (p.Asn570Ser) single nucleotide variant Inborn genetic diseases [RCV002727572] Chr14:62100478 [GRCh38]
Chr14:62567196 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.611G>A (p.Arg204Gln) single nucleotide variant Inborn genetic diseases [RCV002754861] Chr14:62069690 [GRCh38]
Chr14:62536408 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.129C>G (p.Ser43Arg) single nucleotide variant Inborn genetic diseases [RCV002772253] Chr14:61996148 [GRCh38]
Chr14:62462866 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.800T>C (p.Ile267Thr) single nucleotide variant Inborn genetic diseases [RCV002836591] Chr14:62075198 [GRCh38]
Chr14:62541916 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.1135G>C (p.Asp379His) single nucleotide variant Inborn genetic diseases [RCV002992627] Chr14:62080975 [GRCh38]
Chr14:62547693 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.827A>G (p.Glu276Gly) single nucleotide variant Inborn genetic diseases [RCV002990892] Chr14:62075225 [GRCh38]
Chr14:62541943 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.1286C>T (p.Ala429Val) single nucleotide variant Inborn genetic diseases [RCV002949936] Chr14:62081126 [GRCh38]
Chr14:62547844 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.583A>G (p.Ile195Val) single nucleotide variant Inborn genetic diseases [RCV002887492] Chr14:62069662 [GRCh38]
Chr14:62536380 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.1697G>A (p.Arg566His) single nucleotide variant Inborn genetic diseases [RCV002707288] Chr14:62100466 [GRCh38]
Chr14:62567184 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.757C>T (p.Arg253Trp) single nucleotide variant Inborn genetic diseases [RCV003001655] Chr14:62075155 [GRCh38]
Chr14:62541873 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.761G>A (p.Arg254His) single nucleotide variant Inborn genetic diseases [RCV002693501] Chr14:62075159 [GRCh38]
Chr14:62541877 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.1355A>G (p.Lys452Arg) single nucleotide variant Inborn genetic diseases [RCV002854605] Chr14:62081195 [GRCh38]
Chr14:62547913 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.1151G>T (p.Gly384Val) single nucleotide variant Inborn genetic diseases [RCV002709317] Chr14:62080991 [GRCh38]
Chr14:62547709 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.1300C>T (p.Arg434Cys) single nucleotide variant Inborn genetic diseases [RCV002767804] Chr14:62081140 [GRCh38]
Chr14:62547858 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.1493C>T (p.Thr498Met) single nucleotide variant Inborn genetic diseases [RCV002896532] Chr14:62084254 [GRCh38]
Chr14:62550972 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.686G>A (p.Arg229His) single nucleotide variant Inborn genetic diseases [RCV002960599] Chr14:62069765 [GRCh38]
Chr14:62536483 [GRCh37]
Chr14:14q23.2		 likely benign
NM_001367656.1(SYT16):c.892C>T (p.Arg298Cys) single nucleotide variant Inborn genetic diseases [RCV002965013] Chr14:62075290 [GRCh38]
Chr14:62542008 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.805G>C (p.Ala269Pro) single nucleotide variant Inborn genetic diseases [RCV003257798] Chr14:62075203 [GRCh38]
Chr14:62541921 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.1022C>A (p.Pro341Gln) single nucleotide variant Inborn genetic diseases [RCV003215125] Chr14:62080862 [GRCh38]
Chr14:62547580 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.94G>A (p.Gly32Arg) single nucleotide variant Inborn genetic diseases [RCV003179415] Chr14:61996113 [GRCh38]
Chr14:62462831 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.244A>C (p.Asn82His) single nucleotide variant Inborn genetic diseases [RCV003180012] Chr14:61996263 [GRCh38]
Chr14:62462981 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.1331C>T (p.Thr444Ile) single nucleotide variant Inborn genetic diseases [RCV003176115] Chr14:62081171 [GRCh38]
Chr14:62547889 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.760C>T (p.Arg254Cys) single nucleotide variant Inborn genetic diseases [RCV003178053] Chr14:62075158 [GRCh38]
Chr14:62541876 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.1625A>G (p.Asp542Gly) single nucleotide variant Inborn genetic diseases [RCV003206356] Chr14:62100394 [GRCh38]
Chr14:62567112 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.553T>G (p.Ser185Ala) single nucleotide variant Inborn genetic diseases [RCV003207634] Chr14:62069632 [GRCh38]
Chr14:62536350 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.232C>G (p.Gln78Glu) single nucleotide variant Inborn genetic diseases [RCV003308885] Chr14:61996251 [GRCh38]
Chr14:62462969 [GRCh37]
Chr14:14q23.2		 uncertain significance
NM_001367656.1(SYT16):c.1783G>A (p.Val595Ile) single nucleotide variant Inborn genetic diseases [RCV003367557] Chr14:62100552 [GRCh38]
Chr14:62567270 [GRCh37]
Chr14:14q23.2		 likely benign
NM_001367656.1(SYT16):c.496T>G (p.Leu166Val) single nucleotide variant Inborn genetic diseases [RCV003383406] Chr14:61996515 [GRCh38]
Chr14:62463233 [GRCh37]
Chr14:14q23.2		 uncertain significance
GRCh37/hg19 14q22.3-23.2(chr14:55667390-64447598)x1 copy number loss not provided [RCV003483204] Chr14:55667390..64447598 [GRCh37]
Chr14:14q22.3-23.2		 pathogenic
GRCh37/hg19 14q23.1-32.33(chr14:58894502-107227240)x3 copy number gain not provided [RCV003485036] Chr14:58894502..107227240 [GRCh37]
Chr14:14q23.1-32.33		 pathogenic
GRCh37/hg19 14q22.3-24.1(chr14:57588965-68334517)x3 copy number gain not provided [RCV003485034] Chr14:57588965..68334517 [GRCh37]
Chr14:14q22.3-24.1		 likely pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1428
Count of miRNA genes:652
Interacting mature miRNAs:744
Transcripts:ENST00000430451, ENST00000446982, ENST00000555409
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH120951  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371462,531,655 - 62,531,930UniSTSGRCh37
Build 361461,601,408 - 61,601,683RGDNCBI36
Celera1442,582,132 - 42,582,407RGD
Cytogenetic Map14q23.2UniSTS
HuRef1442,695,365 - 42,695,640UniSTS
TNG Radiation Hybrid Map1419674.0UniSTS
SHGC-155175  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371462,496,787 - 62,497,108UniSTSGRCh37
Build 361461,566,540 - 61,566,861RGDNCBI36
Celera1442,547,263 - 42,547,584RGD
Cytogenetic Map14q23.2UniSTS
HuRef1442,660,494 - 42,660,815UniSTS
TNG Radiation Hybrid Map1419653.0UniSTS
D14S578  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371462,552,081 - 62,552,381UniSTSGRCh37
Build 361461,621,834 - 61,622,134RGDNCBI36
Celera1442,602,542 - 42,602,842RGD
Cytogenetic Map14q23.2UniSTS
HuRef1442,715,784 - 42,716,084UniSTS
SHGC-31163  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37468,928,909 - 68,929,019UniSTSGRCh37
Build 36468,611,504 - 68,611,614RGDNCBI36
Celera466,391,214 - 66,391,324RGD
Cytogenetic Map1q32.2UniSTS
Cytogenetic Map4q13.2UniSTS
HuRef464,844,743 - 64,844,853UniSTS
TNG Radiation Hybrid Map437626.0UniSTS
Stanford-G3 RH Map43858.0UniSTS
NCBI RH Map4814.3UniSTS
GeneMap99-G3 RH Map43842.0UniSTS
WI-18435  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371462,503,984 - 62,504,133UniSTSGRCh37
Build 361461,573,737 - 61,573,886RGDNCBI36
Celera1442,554,461 - 42,554,610RGD
Cytogenetic Map14q23.2UniSTS
HuRef1442,667,692 - 42,667,841UniSTS
GeneMap99-GB4 RH Map14144.62UniSTS
Whitehead-RH Map14211.5UniSTS
D1S3696  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map5q21.3UniSTS
Cytogenetic Map17q21-q24UniSTS
Cytogenetic Map5q21-q22UniSTS
Cytogenetic Map4q13.2UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map12q24.33UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1 284 1 6 10
Low 18 5 297 9 20 12 183 19 2470 91 656 116 6 4 4
Below cutoff 1893 1921 1024 250 1014 105 2648 1350 765 208 670 1296 148 786 1769

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001367650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001367652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001367654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001367656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001367657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001367659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001367661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001367663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001387087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001387088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006720272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011537227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011537229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017021697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047431802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047431803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047431804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054376796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054376797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054376798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054376799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054376800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054376801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054376802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054376803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054376804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002957566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB102949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ303367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ617628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK055647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK302919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL137918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL356018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL390816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC117363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC143598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000430451   ⟹   ENSP00000394700
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1462,079,347 - 62,101,709 (+)Ensembl
RefSeq Acc Id: ENST00000554138
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1461,811,974 - 61,970,319 (+)Ensembl
RefSeq Acc Id: ENST00000554436
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1461,864,880 - 61,970,313 (+)Ensembl
RefSeq Acc Id: ENST00000555409   ⟹   ENSP00000451035
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1461,995,834 - 62,101,713 (+)Ensembl
RefSeq Acc Id: ENST00000568344   ⟹   ENSP00000478637
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1461,995,823 - 62,112,550 (+)Ensembl
RefSeq Acc Id: ENST00000636133   ⟹   ENSP00000490266
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1461,812,721 - 62,075,391 (+)Ensembl
RefSeq Acc Id: ENST00000636344
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1461,812,706 - 61,996,460 (+)Ensembl
RefSeq Acc Id: ENST00000683842   ⟹   ENSP00000508274
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1461,812,703 - 62,112,550 (+)Ensembl
RefSeq Acc Id: NM_001367650   ⟹   NP_001354579
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381461,812,162 - 62,112,550 (+)NCBI
T2T-CHM13v2.01456,019,035 - 56,319,770 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001367652   ⟹   NP_001354581
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381461,812,703 - 62,112,550 (+)NCBI
T2T-CHM13v2.01456,019,576 - 56,319,770 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001367654   ⟹   NP_001354583
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381461,812,703 - 62,112,550 (+)NCBI
T2T-CHM13v2.01456,019,576 - 56,319,770 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001367656   ⟹   NP_001354585
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381461,812,703 - 62,112,550 (+)NCBI
T2T-CHM13v2.01456,019,576 - 56,319,770 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001367657   ⟹   NP_001354586
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381461,812,703 - 62,112,550 (+)NCBI
T2T-CHM13v2.01456,019,576 - 56,319,770 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001367659   ⟹   NP_001354588
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381461,812,703 - 62,112,550 (+)NCBI
T2T-CHM13v2.01456,019,576 - 56,319,770 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001367661   ⟹   NP_001354590
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381461,812,703 - 62,112,550 (+)NCBI
T2T-CHM13v2.01456,019,576 - 56,319,770 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001367663   ⟹   NP_001354592
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381461,927,695 - 62,112,550 (+)NCBI
T2T-CHM13v2.01456,134,966 - 56,319,770 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001387087   ⟹   NP_001374016
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381461,812,703 - 62,112,550 (+)NCBI
T2T-CHM13v2.01456,019,576 - 56,319,770 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001387088   ⟹   NP_001374017
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381461,812,703 - 62,112,550 (+)NCBI
T2T-CHM13v2.01456,019,576 - 56,319,770 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011537227   ⟹   XP_011535529
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381462,057,612 - 62,112,550 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011537229   ⟹   XP_011535531
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381462,074,578 - 62,112,550 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017021697   ⟹   XP_016877186
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381461,812,703 - 62,112,550 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024449726   ⟹   XP_024305494
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381461,995,876 - 62,086,178 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024449729   ⟹   XP_024305497
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381461,927,695 - 62,112,550 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024449730   ⟹   XP_024305498
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381461,890,345 - 62,112,550 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047431802   ⟹   XP_047287758
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381461,995,876 - 62,112,825 (+)NCBI
RefSeq Acc Id: XM_047431803   ⟹   XP_047287759
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381461,995,876 - 62,112,550 (+)NCBI
RefSeq Acc Id: XM_047431804   ⟹   XP_047287760
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381461,882,414 - 62,112,550 (+)NCBI
RefSeq Acc Id: XM_054376796   ⟹   XP_054232771
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01456,203,133 - 56,320,045 (+)NCBI
RefSeq Acc Id: XM_054376797   ⟹   XP_054232772
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01456,203,133 - 56,319,770 (+)NCBI
RefSeq Acc Id: XM_054376798   ⟹   XP_054232773
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01456,203,133 - 56,293,430 (+)NCBI
RefSeq Acc Id: XM_054376799   ⟹   XP_054232774
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01456,089,623 - 56,319,770 (+)NCBI
RefSeq Acc Id: XM_054376800   ⟹   XP_054232775
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01456,264,862 - 56,319,770 (+)NCBI
RefSeq Acc Id: XM_054376801   ⟹   XP_054232776
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01456,019,576 - 56,319,770 (+)NCBI
RefSeq Acc Id: XM_054376802   ⟹   XP_054232777
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01456,281,823 - 56,319,770 (+)NCBI
RefSeq Acc Id: XM_054376803   ⟹   XP_054232778
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01456,134,954 - 56,319,770 (+)NCBI
RefSeq Acc Id: XM_054376804   ⟹   XP_054232779
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01456,097,550 - 56,319,770 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001354579 (Get FASTA)   NCBI Sequence Viewer  
  NP_001354581 (Get FASTA)   NCBI Sequence Viewer  
  NP_001354583 (Get FASTA)   NCBI Sequence Viewer  
  NP_001354585 (Get FASTA)   NCBI Sequence Viewer  
  NP_001354586 (Get FASTA)   NCBI Sequence Viewer  
  NP_001354588 (Get FASTA)   NCBI Sequence Viewer  
  NP_001354590 (Get FASTA)   NCBI Sequence Viewer  
  NP_001354592 (Get FASTA)   NCBI Sequence Viewer  
  NP_001374016 (Get FASTA)   NCBI Sequence Viewer  
  NP_001374017 (Get FASTA)   NCBI Sequence Viewer  
  XP_011535529 (Get FASTA)   NCBI Sequence Viewer  
  XP_011535531 (Get FASTA)   NCBI Sequence Viewer  
  XP_016877186 (Get FASTA)   NCBI Sequence Viewer  
  XP_024305494 (Get FASTA)   NCBI Sequence Viewer  
  XP_024305497 (Get FASTA)   NCBI Sequence Viewer  
  XP_024305498 (Get FASTA)   NCBI Sequence Viewer  
  XP_047287758 (Get FASTA)   NCBI Sequence Viewer  
  XP_047287759 (Get FASTA)   NCBI Sequence Viewer  
  XP_047287760 (Get FASTA)   NCBI Sequence Viewer  
  XP_054232771 (Get FASTA)   NCBI Sequence Viewer  
  XP_054232772 (Get FASTA)   NCBI Sequence Viewer  
  XP_054232773 (Get FASTA)   NCBI Sequence Viewer  
  XP_054232774 (Get FASTA)   NCBI Sequence Viewer  
  XP_054232775 (Get FASTA)   NCBI Sequence Viewer  
  XP_054232776 (Get FASTA)   NCBI Sequence Viewer  
  XP_054232777 (Get FASTA)   NCBI Sequence Viewer  
  XP_054232778 (Get FASTA)   NCBI Sequence Viewer  
  XP_054232779 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH40924 (Get FASTA)   NCBI Sequence Viewer  
  AAI17364 (Get FASTA)   NCBI Sequence Viewer  
  AAI43599 (Get FASTA)   NCBI Sequence Viewer  
  BAC76810 (Get FASTA)   NCBI Sequence Viewer  
  BAG64084 (Get FASTA)   NCBI Sequence Viewer  
  CAC33889 (Get FASTA)   NCBI Sequence Viewer  
  CAE85114 (Get FASTA)   NCBI Sequence Viewer  
  EAW80812 (Get FASTA)   NCBI Sequence Viewer  
  EAW80813 (Get FASTA)   NCBI Sequence Viewer  
  EAW80814 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000451035.1
  ENSP00000478637.1
  ENSP00000490266.1
  ENSP00000508274
  ENSP00000508274.1
GenBank Protein Q17RD7 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_011535529   ⟸   XM_011537227
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011535531   ⟸   XM_011537229
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_016877186   ⟸   XM_017021697
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_024305494   ⟸   XM_024449726
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_024305498   ⟸   XM_024449730
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_024305497   ⟸   XM_024449729
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: NP_001354579   ⟸   NM_001367650
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001354590   ⟸   NM_001367661
- Peptide Label: isoform 4
- UniProtKB: Q8IUU0 (UniProtKB/Swiss-Prot),   Q7Z441 (UniProtKB/Swiss-Prot),   Q707N2 (UniProtKB/Swiss-Prot),   Q17RD7 (UniProtKB/Swiss-Prot),   C9J8I3 (UniProtKB/Swiss-Prot),   B7ZL60 (UniProtKB/Swiss-Prot),   B4DZH2 (UniProtKB/Swiss-Prot),   Q9BQR8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001354588   ⟸   NM_001367659
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001354586   ⟸   NM_001367657
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001354585   ⟸   NM_001367656
- Peptide Label: isoform 4
- UniProtKB: Q8IUU0 (UniProtKB/Swiss-Prot),   Q7Z441 (UniProtKB/Swiss-Prot),   Q707N2 (UniProtKB/Swiss-Prot),   Q17RD7 (UniProtKB/Swiss-Prot),   C9J8I3 (UniProtKB/Swiss-Prot),   B7ZL60 (UniProtKB/Swiss-Prot),   B4DZH2 (UniProtKB/Swiss-Prot),   Q9BQR8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001354581   ⟸   NM_001367652
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001354583   ⟸   NM_001367654
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001354592   ⟸   NM_001367663
- Peptide Label: isoform 4
- UniProtKB: Q8IUU0 (UniProtKB/Swiss-Prot),   Q7Z441 (UniProtKB/Swiss-Prot),   Q707N2 (UniProtKB/Swiss-Prot),   Q17RD7 (UniProtKB/Swiss-Prot),   C9J8I3 (UniProtKB/Swiss-Prot),   B7ZL60 (UniProtKB/Swiss-Prot),   B4DZH2 (UniProtKB/Swiss-Prot),   Q9BQR8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSP00000451035   ⟸   ENST00000555409
RefSeq Acc Id: ENSP00000490266   ⟸   ENST00000636133
RefSeq Acc Id: ENSP00000394700   ⟸   ENST00000430451
RefSeq Acc Id: ENSP00000478637   ⟸   ENST00000568344
RefSeq Acc Id: NP_001374017   ⟸   NM_001387088
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001374016   ⟸   NM_001387087
- Peptide Label: isoform 4
- UniProtKB: Q8IUU0 (UniProtKB/Swiss-Prot),   Q7Z441 (UniProtKB/Swiss-Prot),   Q707N2 (UniProtKB/Swiss-Prot),   Q17RD7 (UniProtKB/Swiss-Prot),   C9J8I3 (UniProtKB/Swiss-Prot),   B7ZL60 (UniProtKB/Swiss-Prot),   B4DZH2 (UniProtKB/Swiss-Prot),   Q9BQR8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSP00000508274   ⟸   ENST00000683842
RefSeq Acc Id: XP_047287760   ⟸   XM_047431804
- Peptide Label: isoform X3
RefSeq Acc Id: XP_047287758   ⟸   XM_047431802
- Peptide Label: isoform X1
- UniProtKB: Q8IUU0 (UniProtKB/Swiss-Prot),   Q7Z441 (UniProtKB/Swiss-Prot),   Q707N2 (UniProtKB/Swiss-Prot),   Q17RD7 (UniProtKB/Swiss-Prot),   C9J8I3 (UniProtKB/Swiss-Prot),   B7ZL60 (UniProtKB/Swiss-Prot),   B4DZH2 (UniProtKB/Swiss-Prot),   Q9BQR8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047287759   ⟸   XM_047431803
- Peptide Label: isoform X1
- UniProtKB: Q8IUU0 (UniProtKB/Swiss-Prot),   Q7Z441 (UniProtKB/Swiss-Prot),   Q707N2 (UniProtKB/Swiss-Prot),   Q17RD7 (UniProtKB/Swiss-Prot),   C9J8I3 (UniProtKB/Swiss-Prot),   B7ZL60 (UniProtKB/Swiss-Prot),   B4DZH2 (UniProtKB/Swiss-Prot),   Q9BQR8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054232776   ⟸   XM_054376801
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054232774   ⟸   XM_054376799
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054232779   ⟸   XM_054376804
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054232778   ⟸   XM_054376803
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054232771   ⟸   XM_054376796
- Peptide Label: isoform X1
- UniProtKB: Q8IUU0 (UniProtKB/Swiss-Prot),   Q7Z441 (UniProtKB/Swiss-Prot),   Q707N2 (UniProtKB/Swiss-Prot),   Q17RD7 (UniProtKB/Swiss-Prot),   C9J8I3 (UniProtKB/Swiss-Prot),   B7ZL60 (UniProtKB/Swiss-Prot),   B4DZH2 (UniProtKB/Swiss-Prot),   Q9BQR8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054232772   ⟸   XM_054376797
- Peptide Label: isoform X1
- UniProtKB: Q8IUU0 (UniProtKB/Swiss-Prot),   Q7Z441 (UniProtKB/Swiss-Prot),   Q707N2 (UniProtKB/Swiss-Prot),   Q17RD7 (UniProtKB/Swiss-Prot),   C9J8I3 (UniProtKB/Swiss-Prot),   B7ZL60 (UniProtKB/Swiss-Prot),   B4DZH2 (UniProtKB/Swiss-Prot),   Q9BQR8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054232773   ⟸   XM_054376798
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054232775   ⟸   XM_054376800
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054232777   ⟸   XM_054376802
- Peptide Label: isoform X6
Protein Domains
C2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q17RD7-F1-model_v2 AlphaFold Q17RD7 1-645 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:23142 AgrOrtholog
COSMIC SYT16 COSMIC
Ensembl Genes ENSG00000139973 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000555409.1 UniProtKB/Swiss-Prot
  ENST00000568344.5 UniProtKB/Swiss-Prot
  ENST00000636133.1 UniProtKB/TrEMBL
  ENST00000683842 ENTREZGENE
  ENST00000683842.1 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.150 UniProtKB/Swiss-Prot
GTEx ENSG00000139973 GTEx
HGNC ID HGNC:23142 ENTREZGENE
Human Proteome Map SYT16 Human Proteome Map
InterPro C2_dom UniProtKB/Swiss-Prot
  C2_domain_sf UniProtKB/Swiss-Prot
  SYT14/14L/16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 83851 ENTREZGENE
OMIM 610950 OMIM
PANTHER PTHR46129 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR46129:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/Swiss-Prot
PharmGKB PA134964250 PharmGKB
PROSITE PS50004 UniProtKB/Swiss-Prot
SMART SM00239 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49562 UniProtKB/Swiss-Prot
UniProt A0A1B0GUW0_HUMAN UniProtKB/TrEMBL
  B4DZH2 ENTREZGENE
  B7ZL60 ENTREZGENE
  C9J8I3 ENTREZGENE
  Q17RD7 ENTREZGENE
  Q707N2 ENTREZGENE
  Q7Z441 ENTREZGENE
  Q8IUU0 ENTREZGENE
  Q9BQR8 ENTREZGENE
  SYT16_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary B4DZH2 UniProtKB/Swiss-Prot
  B7ZL60 UniProtKB/Swiss-Prot
  C9J8I3 UniProtKB/Swiss-Prot
  Q707N2 UniProtKB/Swiss-Prot
  Q7Z441 UniProtKB/Swiss-Prot
  Q8IUU0 UniProtKB/Swiss-Prot
  Q9BQR8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 SYT16  synaptotagmin 16    synaptotagmin XVI  Symbol and/or name change 5135510 APPROVED