SYT16 (synaptotagmin 16) - Rat Genome Database

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Gene: SYT16 (synaptotagmin 16) Pan paniscus
Analyze
Symbol: SYT16
Name: synaptotagmin 16
RGD ID: 11708647
Description: ENCODES a protein that exhibits calcium-dependent phospholipid binding (ortholog); identical protein binding (ortholog); phospholipid binding (ortholog); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100992514; synaptotagmin-16; uncharacterized LOC100992514
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21562,942,429 - 63,243,109 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11462,158,948 - 62,459,623 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01442,412,445 - 42,713,118 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11460,827,456 - 60,958,659 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SYT16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21562,942,429 - 63,243,109 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11462,158,948 - 62,459,623 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01442,412,445 - 42,713,118 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11460,827,456 - 60,958,659 (+)NCBIpanpan1.1PanPan1.1panPan2
SYT16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381461,812,162 - 62,112,825 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1461,811,974 - 62,112,550 (+)EnsemblGRCh38hg38GRCh38
GRCh371462,278,880 - 62,579,268 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361461,532,294 - 61,638,180 (+)NCBINCBI36Build 36hg18NCBI36
Build 341461,532,490 - 61,637,178NCBI
Celera1442,513,014 - 42,618,887 (+)NCBICelera
Cytogenetic Map14q23.2NCBI
HuRef1442,626,244 - 42,732,142 (+)NCBIHuRef
CHM1_11462,401,963 - 62,507,860 (+)NCBICHM1_1
T2T-CHM13v2.01456,019,035 - 56,320,045 (+)NCBIT2T-CHM13v2.0
Syt16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391274,044,490 - 74,314,690 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1274,044,435 - 74,320,041 (+)EnsemblGRCm39 Ensembl
GRCm381273,997,624 - 74,267,916 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1273,997,661 - 74,273,267 (+)EnsemblGRCm38mm10GRCm38
MGSCv371275,098,748 - 75,368,903 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361274,916,599 - 75,186,752 (+)NCBIMGSCv36mm8
Celera1275,111,274 - 75,381,064 (+)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1232.02NCBI
Syt16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8698,456,582 - 98,735,306 (+)NCBIGRCr8
mRatBN7.2692,721,415 - 92,972,140 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl692,721,101 - 92,971,748 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0697,076,304 - 97,199,856 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl697,110,158 - 97,198,899 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06106,536,889 - 106,630,139 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.06106,340,012 - 106,466,441 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4696,684,622 - 96,774,478 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera691,177,534 - 91,427,252 (+)NCBICelera
Cytogenetic Map6q24NCBI
Syt16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554667,601,796 - 7,797,793 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554667,600,990 - 7,927,710 (-)NCBIChiLan1.0ChiLan1.0
SYT16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1836,820,031 - 36,945,267 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl836,839,334 - 36,934,378 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha836,460,224 - 36,697,689 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0836,940,898 - 37,174,933 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl836,940,215 - 37,173,360 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1836,550,398 - 36,784,298 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0836,627,803 - 36,869,264 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0836,990,302 - 37,225,514 (+)NCBIUU_Cfam_GSD_1.0
Syt16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864068,067,673 - 68,201,771 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364955,998,614 - 6,123,440 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364955,998,728 - 6,123,975 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYT16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1190,735,881 - 191,031,684 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11190,735,897 - 191,059,715 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21212,388,776 - 212,464,354 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYT16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12439,180,924 - 39,282,687 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2439,181,068 - 39,280,083 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605327,242,975 - 27,557,915 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Syt16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473439,030,391 - 39,213,851 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473439,030,188 - 39,155,210 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_034937661   ⟹   XP_034793552
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21562,942,956 - 63,243,109 (+)NCBI
NHGRI_mPanPan11462,159,470 - 62,459,623 (+)NCBI
Mhudiblu_PPA_v01442,412,986 - 42,713,118 (+)NCBI
RefSeq Acc Id: XM_057299715   ⟹   XP_057155698
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21562,942,956 - 63,243,109 (+)NCBI
NHGRI_mPanPan11462,159,470 - 62,459,623 (+)NCBI
RefSeq Acc Id: XM_057299716   ⟹   XP_057155699
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21562,942,429 - 63,243,109 (+)NCBI
NHGRI_mPanPan11462,158,948 - 62,459,623 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034793552 (Get FASTA)   NCBI Sequence Viewer  
  XP_057155698 (Get FASTA)   NCBI Sequence Viewer  
  XP_057155699 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_034793552   ⟸   XM_034937661
- Peptide Label: isoform X1
RefSeq Acc Id: XP_057155699   ⟸   XM_057299716
- Peptide Label: isoform X3
RefSeq Acc Id: XP_057155698   ⟸   XM_057299715
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene SYT16 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-20 SYT16  synaptotagmin 16  LOC100992514  uncharacterized LOC100992514  Data merged from RGD:11799359 737654 PROVISIONAL